Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold115G32187 Striga asiatica HOM05D001884 ORTHO05D001890 4.7e-93 344.4 157 100.0
SGA_v2.0_scaffold48G17950 Striga asiatica HOM05D001884 ORTHO05D001890 4.7e-16 88.6 43 90.7
SGA_v2.0_scaffold58G20354 Striga asiatica HOM05D001884 ORTHO05D001890 1.0e-15 87.4 62 66.1
MSTRG.25328 Avicennia marina HOM05D001884 ORTHO05D001890 1.3e-13 80.5 43 79.1
Hma1.2p1_0081F.1_g042410 Hydrangea macrophylla HOM05D001884 ORTHO05D001890 1.1e-12 77.4 43 79.1
Hma1.2p1_0483F.1_g162730 Hydrangea macrophylla HOM05D001884 ORTHO05D001890 1.1e-12 77.4 43 79.1
CSS0014873 Camellia sinensis var. sinensis HOM05D001884 ORTHO05D001890 1.4e-12 77.0 43 76.7
Dinv25816 Davidia involucrata HOM05D001884 ORTHO05D001890 1.4e-12 77.0 43 79.1
Migut.C01034 Erythranthe guttata HOM05D001884 ORTHO05D001890 4.1e-12 75.5 43 72.1
TAR625G1182 Trochodendron aralioides HOM05D001884 ORTHO05D001890 7.0e-12 74.7 43 74.4
Nn1g06192 Nelumbo nucifera HOM05D001884 ORTHO05D001890 9.2e-12 74.3 43 74.4
Manes.18G088600 Manihot esculenta HOM05D001884 ORTHO05D001890 2.7e-11 72.8 43 69.8
Atru.chr13.1714 Acer truncatum HOM05D001884 ORTHO05D001890 3.5e-11 72.4 45 68.9
Lj4C692T6 Lonicera japonica HOM05D001884 ORTHO05D001890 4.5e-11 72.0 43 74.4
GSVIVG01010044001 Vitis vinifera HOM05D001884 ORTHO05D001890 4.5e-11 72.0 91 46.2
QL02p025002 Quercus lobata HOM05D001884 ORTHO05D001890 5.9e-11 71.6 43 69.8
QL02p025012 Quercus lobata HOM05D001884 ORTHO05D001890 5.9e-11 71.6 43 69.8
Ciclev10002326m.g Citrus clementina HOM05D001884 ORTHO05D001890 1.3e-10 70.5 43 69.8
CiPaw.15G020900 Carya illinoinensis HOM05D001884 ORTHO05D001890 1.7e-10 70.1 43 72.1
Manes.18G090301 Manihot esculenta HOM05D001884 ORTHO05D001890 1.7e-10 70.1 43 67.4
Haze_17706 Corylus avellana HOM05D001884 ORTHO05D001890 2.3e-10 69.7 43 74.4
PGR042G0439 Punica granatum HOM05D001884 ORTHO05D001890 2.9e-10 69.3 70 51.4
Eucgr.F02732 Eucalyptus grandis HOM05D001884 ORTHO05D001890 3.8e-10 68.9 43 67.4
Potri.005G188300 Populus trichocarpa HOM05D001884 ORTHO05D001890 3.8e-10 68.9 43 69.8
Potri.005G188400 Populus trichocarpa HOM05D001884 ORTHO05D001890 3.8e-10 68.9 43 69.8
SGA_v2.0_scaffold115G32135 Striga asiatica HOM05D001884 ORTHO05D405939 3.8e-10 68.9 29 96.6
MD05G1017400 Malus domestica HOM05D001884 ORTHO05D001890 5.0e-10 68.6 42 69.0
CANSAT78G0214 Cannabis sativa HOM05D001884 ORTHO05D001890 6.6e-10 68.2 43 69.8
Hma1.2p1_0107F.1_g051510 Hydrangea macrophylla HOM05D001884 ORTHO05D001890 6.6e-10 68.2 43 67.4
CSS0017648 Camellia sinensis var. sinensis HOM05D001884 ORTHO05D001890 8.6e-10 67.8 43 65.1
CSS0018843 Camellia sinensis var. sinensis HOM05D001884 ORTHO05D001890 8.6e-10 67.8 43 65.1
CiPaw.16G017000 Carya illinoinensis HOM05D001884 ORTHO05D001890 8.6e-10 67.8 43 65.1
CiPaw.16G017100 Carya illinoinensis HOM05D001884 ORTHO05D001890 8.6e-10 67.8 43 65.1
Glyma.06G123800 Glycine max HOM05D001884 ORTHO05D001890 8.6e-10 67.8 43 67.4
MD05G1017100 Malus domestica HOM05D001884 ORTHO05D001890 8.6e-10 67.8 43 65.1
QL02p025153 Quercus lobata HOM05D001884 ORTHO05D001890 8.6e-10 67.8 39 71.8
Cfa018353 Carpinus fangiana HOM05D001884 ORTHO05D001890 1.1e-09 67.4 43 72.1
FAN24G2832 Fragaria x ananassa HOM05D001884 ORTHO05D001890 1.1e-09 67.4 43 65.1
MD10G1016800 Malus domestica HOM05D001884 ORTHO05D001890 1.1e-09 67.4 45 62.2
Phvul.009G135800 Phaseolus vulgaris HOM05D001884 ORTHO05D001890 1.1e-09 67.4 43 67.4
VMungo1309G0708 Vigna mungo HOM05D001884 ORTHO05D001890 1.1e-09 67.4 39 74.4
ATR1136G079 Amborella trichopoda HOM05D001884 ORTHO05D001890 1.5e-09 67.0 72 44.4
Prupe.8G020800 Prunus persica HOM05D001884 ORTHO05D001890 1.5e-09 67.0 43 62.8
Hund26718 Selenicereus undatus HOM05D001884 ORTHO05D001890 1.5e-09 67.0 44 70.5
Actinidia01139 Actinidia chinensis HOM05D001884 ORTHO05D001890 1.9e-09 66.6 44 70.5
Actinidia10669 Actinidia chinensis HOM05D001884 ORTHO05D001890 2.5e-09 66.2 43 60.5
CANSAT25G2731 Cannabis sativa HOM05D001884 ORTHO05D001890 3.3e-09 65.9 50 60.0
FAN20G0879 Fragaria x ananassa HOM05D001884 ORTHO05D001890 3.3e-09 65.9 39 69.2
RcHm_v2.0_Chr6g0276971 Rosa chinensis HOM05D001884 ORTHO05D001890 3.3e-09 65.9 43 62.8
CSS0023249 Camellia sinensis var. sinensis HOM05D001884 ORTHO05D001890 4.3e-09 65.5 43 62.8
CSS0042211 Camellia sinensis var. sinensis HOM05D001884 ORTHO05D001890 4.3e-09 65.5 43 62.8
Eucgr.F02733 Eucalyptus grandis HOM05D001884 ORTHO05D001890 4.3e-09 65.5 43 65.1
MBI03_g11318_MAGBIO Magnolia biondii HOM05D001884 ORTHO05D001890 4.3e-09 65.5 43 62.8
Sabra05G0143800 Salix brachista HOM05D001884 ORTHO05D001890 4.3e-09 65.5 43 67.4
MD10G1017300 Malus domestica HOM05D001884 ORTHO05D001890 5.6e-09 65.1 39 69.2
Prupe.8G021300 Prunus persica HOM05D001884 ORTHO05D001890 5.6e-09 65.1 43 65.1
Glyma.06G123700 Glycine max HOM05D001884 ORTHO05D001890 7.3e-09 64.7 43 60.5
Haze_17705 Corylus avellana HOM05D001884 ORTHO05D001890 9.5e-09 64.3 43 60.5
Atru.chr13.1713 Acer truncatum HOM05D001884 ORTHO05D001890 1.2e-08 63.9 43 60.5
Cpa.g.sc49.53 Carica papaya HOM05D001884 ORTHO05D001890 1.2e-08 63.9 43 60.5
Actinidia10670 Actinidia chinensis HOM05D001884 ORTHO05D001890 1.6e-08 63.5 42 61.9
Duzib093G2258 Durio zibethinus HOM05D001884 ORTHO05D001890 1.6e-08 63.5 39 66.7
Gohir.A02G066300 Gossypium hirsutum HOM05D001884 ORTHO05D001890 1.6e-08 63.5 43 58.1
RcHm_v2.0_Chr6g0276871 Rosa chinensis HOM05D001884 ORTHO05D001890 1.6e-08 63.5 43 62.8
COL.COLO4_25227 Corchorus olitorius HOM05D001884 ORTHO05D001890 2.1e-08 63.2 39 64.1
Lj1g0021797 Lotus japonicus HOM05D001884 ORTHO05D001890 2.1e-08 63.2 42 59.5
PSO541G3765 Papaver somniferum HOM05D001884 ORTHO05D001890 2.1e-08 63.2 43 55.8
PGSC0003DMG400024843 Solanum tuberosum HOM05D001884 ORTHO05D001890 2.1e-08 63.2 43 53.5
Thecc.08G145600 Theobroma cacao HOM05D001884 ORTHO05D001890 2.1e-08 63.2 39 66.7
GSVIVG01010045001 Vitis vinifera HOM05D001884 ORTHO05D001890 2.8e-08 62.8 43 62.8
Duzib116G0270 Durio zibethinus HOM05D001884 ORTHO05D001890 3.6e-08 62.4 39 64.1
Lj7A365T39 Lonicera japonica HOM05D001884 ORTHO05D001890 3.6e-08 62.4 43 58.1
RcHm_v2.0_Chr6g0276811 Rosa chinensis HOM05D001884 ORTHO05D001890 3.6e-08 62.4 43 62.8
Thecc.08G145700 Theobroma cacao HOM05D001884 ORTHO05D001890 3.6e-08 62.4 39 64.1
Cfa018354 Carpinus fangiana HOM05D001884 ORTHO05D001890 4.7e-08 62.0 43 58.1
Peaxi162Scf00263g00516 Petunia axillaris HOM05D001884 ORTHO05D001890 4.7e-08 62.0 43 58.1
Prupe.8G021200 Prunus persica HOM05D001884 ORTHO05D001890 4.7e-08 62.0 43 60.5
RcHm_v2.0_Chr6g0276891 Rosa chinensis HOM05D001884 ORTHO05D001890 4.7e-08 62.0 43 60.5
TWI60G0479 Tripterygium wilfordii HOM05D001884 ORTHO05D001890 4.7e-08 62.0 43 60.5
Lj1g0012413 Lotus japonicus HOM05D001884 ORTHO05D001890 6.1e-08 61.6 42 57.1
SalBow7G1431 Salvia bowleyana HOM05D001884 ORTHO05D001890 6.1e-08 61.6 43 65.1
Solyc04g064870.3 Solanum lycopersicum HOM05D001884 ORTHO05D001890 6.1e-08 61.6 43 51.2
DCAR_030716 Daucus carota HOM05D001884 ORTHO05D001890 8.0e-08 61.2 39 64.1
TWI34G0401 Tripterygium wilfordii HOM05D001884 ORTHO05D001890 8.0e-08 61.2 43 62.8
FvH4_2g14470 Fragaria vesca HOM05D001884 ORTHO05D001890 1.0e-07 60.8 43 60.5
FAN24G1085 Fragaria x ananassa HOM05D001884 ORTHO05D001890 1.0e-07 60.8 43 60.5
CAN.G744.5 Capsicum annuum HOM05D001884 ORTHO05D001890 1.4e-07 60.5 39 64.1
Cfa018355 Carpinus fangiana HOM05D001884 ORTHO05D001890 1.4e-07 60.5 39 61.5
DCAR_014412 Daucus carota HOM05D001884 ORTHO05D001890 1.4e-07 60.5 67 49.3
SalBow7G0520 Salvia bowleyana HOM05D001884 ORTHO05D001890 1.4e-07 60.5 43 62.8
FAN20G0550 Fragaria x ananassa HOM05D001884 ORTHO05D001890 1.8e-07 60.1 43 60.5
Gohir.1Z049314 Gossypium hirsutum HOM05D001884 ORTHO05D001890 1.8e-07 60.1 45 60.0
Sopen04g026830 Solanum pennellii HOM05D001884 ORTHO05D001890 1.8e-07 60.1 43 48.8
EL10Ac6g13230 Beta vulgaris HOM05D001884 ORTHO05D001890 2.3e-07 59.7 43 60.5
DCAR_014411 Daucus carota HOM05D001884 ORTHO05D001890 2.3e-07 59.7 39 64.1
FAN15G0884 Fragaria x ananassa HOM05D001884 ORTHO05D001890 2.3e-07 59.7 43 58.1
HanXRQChr04g0109391 Helianthus annuus HOM05D001884 ORTHO05D001890 2.3e-07 59.7 38 68.4
Nitab4.5_0010768g0030 Nicotiana tabacum HOM05D001884 ORTHO05D001890 2.3e-07 59.7 43 53.5
Sc04g0007990 Simmondsia chinensis HOM05D001884 ORTHO05D001890 3.0e-07 59.3 39 64.1
arahy.Tifrunner.gnm1.ann1.MXX1LP Arachis hypogaea HOM05D001884 ORTHO05D001890 4.0e-07 58.9 69 37.7
Dinv41116 Davidia involucrata HOM05D001884 ORTHO05D001890 5.2e-07 58.5 36 66.7
Gohir.D03G061400 Gossypium hirsutum HOM05D001884 ORTHO05D001890 5.2e-07 58.5 34 73.5
Gorai.013G105200 Gossypium raimondii HOM05D001884 ORTHO05D001890 5.2e-07 58.5 34 73.5
Lalb_Chr11g0066471 Lupinus albus HOM05D001884 ORTHO05D001890 5.2e-07 58.5 42 59.5
EL10Ac6g13231 Beta vulgaris HOM05D001884 ORTHO05D001890 6.8e-07 58.2 43 55.8
ECA247G1532 Erigeron canadensis HOM05D001884 ORTHO05D001890 6.8e-07 58.2 38 68.4
Pp3c11_19760 Physcomitrium patens HOM05D001884 ORTHO05D001890 6.8e-07 58.2 77 37.7
RcHm_v2.0_Chr6g0276861 Rosa chinensis HOM05D001884 ORTHO05D001890 6.8e-07 58.2 43 55.8
AUR62037556 Chenopodium quinoa HOM05D001884 ORTHO05D001890 8.9e-07 57.8 61 41.0
Duzib116G0211 Durio zibethinus HOM05D001884 ORTHO05D001890 8.9e-07 57.8 34 73.5
MBI06_g42498_MAGBIO Magnolia biondii HOM05D001884 ORTHO05D001890 8.9e-07 57.8 44 54.5
Nitab4.5_0018289g0010 Nicotiana tabacum HOM05D001884 ORTHO05D001890 8.9e-07 57.8 43 53.5
Peaxi162Scf00263g00515 Petunia axillaris HOM05D001884 ORTHO05D001890 8.9e-07 57.8 40 57.5
AUR62032805 Chenopodium quinoa HOM05D001884 ORTHO05D001890 1.2e-06 57.4 39 66.7
Solyc04g064880.4 Solanum lycopersicum HOM05D001884 ORTHO05D001890 1.2e-06 57.4 41 53.7
Sopen04g026840 Solanum pennellii HOM05D001884 ORTHO05D001890 1.2e-06 57.4 41 53.7
Aqoxy5G01633 Aquilegia oxysepala HOM05D001884 ORTHO05D001890 1.5e-06 57.0 64 46.9
arahy.Tifrunner.gnm1.ann1.88MUGQ Arachis hypogaea HOM05D001884 ORTHO05D001890 1.5e-06 57.0 69 36.2
MBI06_g43459_MAGBIO Magnolia biondii HOM05D001884 ORTHO05D001890 1.5e-06 57.0 42 54.8
PGR042G3199 Punica granatum HOM05D001884 ORTHO05D001890 1.5e-06 57.0 43 58.1
Nn3g21126 Nelumbo nucifera HOM05D001884 ORTHO05D001890 2.0e-06 56.6 81 34.6
Nitab4.5_0000299g0200 Nicotiana tabacum HOM05D001884 ORTHO05D001890 2.0e-06 56.6 40 55.0
PSO384G0498 Papaver somniferum HOM05D001884 ORTHO05D001890 2.0e-06 56.6 39 56.4
SEGI_12224 Sequoiadendron giganteum HOM05D001884 ORTHO05D001890 2.0e-06 56.6 39 56.4
CANSAT35G0146 Cannabis sativa HOM05D001884 ORTHO05D001890 2.6e-06 56.2 69 39.1
Gohir.D02G072201 Gossypium hirsutum HOM05D001884 ORTHO05D001890 2.6e-06 56.2 37 56.8
Gorai.005G081400 Gossypium raimondii HOM05D001884 ORTHO05D001890 2.6e-06 56.2 37 56.8
Ciclev10023544m.g Citrus clementina HOM05D001884 ORTHO05D001890 3.4e-06 55.8 61 34.4
CsaV3_6G030910 Cucumis sativus L. HOM05D001884 ORTHO05D001890 3.4e-06 55.8 45 51.1
Potri.011G108900 Populus trichocarpa HOM05D001884 ORTHO05D001890 3.4e-06 55.8 88 33.0
SEGI_02356 Sequoiadendron giganteum HOM05D001884 ORTHO05D001890 3.4e-06 55.8 39 56.4
PGSC0003DMG401024842 Solanum tuberosum HOM05D001884 ORTHO05D001890 3.4e-06 55.8 41 51.2
MSTRG.1370 Avicennia marina HOM05D001884 ORTHO05D001890 4.4e-06 55.5 39 59.0
HanXRQChr02g0055181 Helianthus annuus HOM05D001884 ORTHO05D001890 4.4e-06 55.5 38 63.2
ATR1136G191 Amborella trichopoda HOM05D001884 ORTHO05D001890 5.8e-06 55.1 43 55.8
Aqoxy5G01662 Aquilegia oxysepala HOM05D001884 ORTHO05D001890 5.8e-06 55.1 64 43.8
Duzib213G0216 Durio zibethinus HOM05D001884 ORTHO05D001890 5.8e-06 55.1 39 56.4
ECA233G3529 Erigeron canadensis HOM05D001884 ORTHO05D001890 5.8e-06 55.1 46 50.0
FvH4_7g16730 Fragaria vesca HOM05D001884 ORTHO05D001890 5.8e-06 55.1 39 56.4
Lsat_1_v5_gn_1_9001 Lactuca sativa HOM05D001884 ORTHO05D001890 5.8e-06 55.1 43 53.5
Thecc.07G118100 Theobroma cacao HOM05D001884 ORTHO05D001890 5.8e-06 55.1 39 56.4
Aqoxy1G02008 Aquilegia oxysepala HOM05D001884 ORTHO05D001890 7.5e-06 54.7 61 37.7
HanXRQChr02g0055231 Helianthus annuus HOM05D001884 ORTHO05D001890 7.5e-06 54.7 40 57.5
HanXRQChr11g0331021 Helianthus annuus HOM05D001884 ORTHO05D001890 7.5e-06 54.7 83 32.5
Nn5g28961 Nelumbo nucifera HOM05D001884 ORTHO05D001890 7.5e-06 54.7 38 57.9
SEGI_03550 Sequoiadendron giganteum HOM05D001884 ORTHO05D001890 7.5e-06 54.7 39 56.4
FAN27G2970 Fragaria x ananassa HOM05D001884 ORTHO05D001890 9.8e-06 54.3 39 56.4
HanXRQChr02g0055191 Helianthus annuus HOM05D001884 ORTHO05D001890 9.8e-06 54.3 38 60.5
Lsat_1_v5_gn_1_7361 Lactuca sativa HOM05D001884 ORTHO05D001890 9.8e-06 54.3 38 65.8


User provided reference genes

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