Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold115G32166 Striga asiatica HOM05D004950 ORTHO05D004838 2.8e-221 772.3 622 100.0
SalBow5G3597 Salvia bowleyana HOM05D004950 ORTHO05D004838 1.3e-69 268.5 636 51.9
Oeu033042.1 Olea europaea HOM05D004950 ORTHO05D004838 5.5e-68 263.1 391 51.4
Oeu012397.1 Olea europaea HOM05D004950 ORTHO05D004838 5.3e-63 246.5 676 37.0
Migut.L00159 Erythranthe guttata HOM05D004950 ORTHO05D004838 1.8e-58 231.5 299 60.9
unitig_748.g8651 Utricularia gibba HOM05D004950 ORTHO05D004838 3.7e-56 223.8 639 36.2
Peaxi162Scf00383g01014 Petunia axillaris HOM05D004950 ORTHO05D004838 6.3e-56 223.0 683 39.1
MSTRG.3758 Avicennia marina HOM05D004950 ORTHO05D004838 2.7e-54 217.6 290 50.0
vmacro12982 Vaccinium macrocarpon HOM05D004950 ORTHO05D004838 2.2e-53 214.5 389 40.1
Dinv13228 Davidia involucrata HOM05D004950 ORTHO05D004838 5.0e-53 213.4 381 44.1
Sopen11g004990 Solanum pennellii HOM05D004950 ORTHO05D004838 2.7e-51 207.6 684 38.2
unitig_32.g11809 Utricularia gibba HOM05D004950 ORTHO05D004838 5.2e-50 203.4 283 58.3
TAR376G0363 Trochodendron aralioides HOM05D004950 ORTHO05D004838 2.0e-49 201.4 392 46.9
Nitab4.5_0000241g0210 Nicotiana tabacum HOM05D000288 ORTHO05D004838 3.4e-49 200.7 682 38.9
Cc07_g14660 Coffea canephora HOM05D004950 ORTHO05D004838 3.5e-46 190.7 285 54.0
PGSC0003DMG400016153 Solanum tuberosum HOM05D004950 ORTHO05D004838 5.0e-45 186.8 392 44.4
Lj2C540T9 Lonicera japonica HOM05D004950 ORTHO05D004838 1.1e-44 185.7 433 37.9
Nitab4.5_0006824g0010 Nicotiana tabacum HOM05D004950 ORTHO05D004838 2.1e-43 181.4 675 38.5
CAN.G905.19 Capsicum annuum HOM05D004950 ORTHO05D004838 6.1e-43 179.9 398 43.2
unitig_32.g10703 Utricularia gibba HOM05D004950 ORTHO05D004838 6.8e-42 176.4 395 37.5
Dinv08856 Davidia involucrata HOM05D004950 ORTHO05D004838 8.9e-42 176.0 686 41.5
Lj4A899T58 Lonicera japonica HOM05D004950 ORTHO05D004838 2.6e-41 174.5 657 31.2
Cfa002603 Carpinus fangiana HOM05D004950 ORTHO05D004838 2.2e-40 171.4 393 46.1
Haze_24857 Corylus avellana HOM05D004950 ORTHO05D004838 1.4e-39 168.7 383 46.5
Lsat_1_v5_gn_2_66121 Lactuca sativa HOM05D004950 ORTHO05D004838 1.8e-39 168.3 675 34.8
Sabra07G0079900 Salix brachista HOM05D004950 ORTHO05D004838 3.5e-38 164.1 404 40.6
DCAR_014205 Daucus carota HOM05D004950 ORTHO05D004838 3.3e-36 157.5 330 45.5
HanXRQChr14g0445061 Helianthus annuus HOM05D004950 ORTHO05D004838 5.6e-36 156.8 315 41.3
CSS0021212 Camellia sinensis var. sinensis HOM05D004950 ORTHO05D004838 1.8e-34 151.8 400 40.2
CiPaw.04G103200 Carya illinoinensis HOM05D004950 ORTHO05D004838 3.1e-34 151.0 373 42.4
Solyc11g010210.1 Solanum lycopersicum HOM05D004950 ORTHO05D004838 4.0e-34 150.6 392 46.7
Actinidia28833 Actinidia chinensis HOM05D000288 ORTHO05D004838 5.2e-34 150.2 267 41.9
Atru.chr3.1354 Acer truncatum HOM05D004950 ORTHO05D004838 2.0e-33 148.3 401 38.2
THA.LOC104807862 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 1.1e-31 142.5 229 48.5
GSVIVG01003422001 Vitis vinifera HOM05D000001 ORTHO05D000003 2.4e-31 141.4 510 34.1
ECA238G0370 Erigeron canadensis HOM05D004950 ORTHO05D004838 7.0e-31 139.8 236 41.5
Sc16g0000220 Simmondsia chinensis HOM05D004950 ORTHO05D004838 1.2e-30 139.0 384 37.5
Rhsim08G0013200 Rhododendron simsii HOM05D004950 ORTHO05D004838 1.6e-30 138.7 239 50.6
PGSC0003DMG400016794 Solanum tuberosum HOM05D004950 ORTHO05D004838 3.5e-30 137.5 355 34.9
MD11G1200900 Malus domestica HOM05D004950 ORTHO05D004838 6.0e-30 136.7 240 40.0
MELO3C017599.2 Cucumis melo HOM05D004950 ORTHO05D004838 2.3e-29 134.8 425 35.8
Cpa.g.sc55.78 Carica papaya HOM05D004950 ORTHO05D004838 5.0e-29 133.7 424 41.0
EL10As13g24047 Beta vulgaris HOM05D004950 ORTHO05D004838 1.1e-28 132.5 227 47.1
AUR62003257 Chenopodium quinoa HOM05D004950 ORTHO05D004838 1.5e-28 132.1 236 44.5
DCAR_016618 Daucus carota HOM05D004950 ORTHO05D004838 2.5e-28 131.3 420 37.4
ClCG07G017420 Citrullus lanatus HOM05D004950 ORTHO05D004838 3.3e-28 131.0 413 44.6
DCAR_003473 Daucus carota HOM05D004950 ORTHO05D004838 4.3e-28 130.6 409 31.5
CiPaw.03G145300 Carya illinoinensis HOM05D004950 ORTHO05D004838 7.3e-28 129.8 406 39.7
CsaV3_4G004650 Cucumis sativus L. HOM05D004950 ORTHO05D004838 9.5e-28 129.4 246 44.3
CsaV3_UNG131010 Cucumis sativus L. HOM05D004950 ORTHO05D004838 9.5e-28 129.4 246 44.3
CsaV3_UNG154160 Cucumis sativus L. HOM05D004950 ORTHO05D004838 9.5e-28 129.4 246 44.3
MD03G1184100 Malus domestica HOM05D004950 ORTHO05D004838 1.2e-27 129.0 248 44.0
Ciclev10026989m.g Citrus clementina HOM05D004950 ORTHO05D000003 2.1e-27 128.3 254 49.6
Prupe.6G192500 Prunus persica HOM05D004950 ORTHO05D004838 2.8e-27 127.9 248 43.5
FAN28G2730 Fragaria x ananassa HOM05D004950 ORTHO05D004838 3.6e-27 127.5 255 42.4
Medtr3g086890 Medicago truncatula HOM05D004950 ORTHO05D004838 3.6e-27 127.5 399 38.8
THA.LOC104824888 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 4.7e-27 127.1 247 44.1
Ah.02g126160 Amaranthus hybridus HOM05D004950 ORTHO05D004838 8.0e-27 126.3 227 49.3
Psat2g012840 Pisum sativum HOM05D004950 ORTHO05D004838 1.1e-26 125.9 362 39.5
Lalb_Chr08g0230971 Lupinus albus HOM05D004950 ORTHO05D004838 1.8e-26 125.2 382 31.7
Sp7g35850 Schrenkiella parvula HOM05D004950 ORTHO05D004838 2.3e-26 124.8 196 40.3
CAN.G712.13 Capsicum annuum HOM05D004950 ORTHO05D004838 3.1e-26 124.4 252 40.9
Potri.007G096600 Populus trichocarpa HOM05D004950 ORTHO05D004838 1.2e-25 122.5 292 46.9
Lalb_Chr11g0075431 Lupinus albus HOM05D004950 ORTHO05D004838 9.8e-25 119.4 261 43.3
Eucgr.H04743 Eucalyptus grandis HOM05D004950 ORTHO05D004838 1.7e-24 118.6 292 40.4
Lj6g0021918 Lotus japonicus HOM05D004950 ORTHO05D004838 1.7e-24 118.6 389 37.8
QL06p048197 Quercus lobata HOM05D004950 ORTHO05D004838 3.7e-24 117.5 384 38.0
TPR.G16026 Trifolium pratense HOM05D004950 ORTHO05D004838 3.7e-24 117.5 378 39.2
FvH4_1g20290 Fragaria vesca HOM05D004950 ORTHO05D004838 4.9e-24 117.1 218 44.5
Phvul.001G253600 Phaseolus vulgaris HOM05D004950 ORTHO05D004838 4.9e-24 117.1 254 44.9
FAN19G3038 Fragaria x ananassa HOM05D004950 ORTHO05D004838 6.4e-24 116.7 260 39.6
CANSAT01G1426 Cannabis sativa HOM05D004950 ORTHO05D004838 1.1e-23 115.9 283 41.7
CSS0046927 Camellia sinensis var. sinensis HOM05D004950 ORTHO05D004838 1.4e-23 115.5 401 43.6
PSO302G0004 Papaver somniferum HOM05D004950 ORTHO05D004838 1.4e-23 115.5 402 35.3
Solyc07g009520.2 Solanum lycopersicum HOM05D004950 ORTHO05D004838 5.4e-23 113.6 456 32.0
PGR102G2692 Punica granatum HOM05D004950 ORTHO05D004838 7.0e-23 113.2 237 40.9
Nitab4.5_0000128g0260 Nicotiana tabacum HOM05D000288 ORTHO05D004838 9.2e-23 112.8 341 37.8
CARHR246650 Cardamine hirsuta HOM05D004950 ORTHO05D004838 1.6e-22 112.1 188 37.8
Ah.03g142010 Amaranthus hybridus HOM05D004950 ORTHO05D004838 2.1e-22 111.7 228 46.5
Aqoxy6G00721 Aquilegia oxysepala HOM05D004950 ORTHO05D004838 2.1e-22 111.7 402 34.1
BraA09t37775Z Brassica rapa HOM05D004950 ORTHO05D004838 6.0e-22 110.2 224 34.4
Glyma.11G241600 Glycine max HOM05D004950 ORTHO05D004838 7.8e-22 109.8 263 45.2
Potri.005G072400 Populus trichocarpa HOM05D004950 ORTHO05D004838 7.8e-22 109.8 286 42.0
PSO541G5545 Papaver somniferum HOM05D004950 ORTHO05D004838 3.9e-21 107.5 385 36.4
AT4G40020 Arabidopsis thaliana HOM05D004950 ORTHO05D004838 5.1e-21 107.1 136 44.9
AL7G12330 Arabidopsis lyrata HOM05D004950 ORTHO05D004838 8.6e-21 106.3 136 44.9
Ca_16511_v3 Cicer arietinum L. HOM05D004950 ORTHO05D004838 1.1e-20 105.9 411 36.3
VMungo1383G3674 Vigna mungo HOM05D004950 ORTHO05D004838 1.1e-20 105.9 402 35.3
Nn1g05445 Nelumbo nucifera HOM05D004950 ORTHO05D004838 1.5e-20 105.5 228 55.7
Sabra05G0059200 Salix brachista HOM05D004950 ORTHO05D004838 7.3e-20 103.2 388 36.6
Nitab4.5_0001874g0100 Nicotiana tabacum HOM05D004950 ORTHO05D004838 9.5e-20 102.8 438 28.8
RcHm_v2.0_Chr2g0112431 Rosa chinensis HOM05D004950 ORTHO05D004838 9.5e-20 102.8 138 56.5
AUR62027212 Chenopodium quinoa HOM05D004950 ORTHO05D004838 1.6e-19 102.1 399 35.6
TWI74G0620 Tripterygium wilfordii HOM05D004950 ORTHO05D004838 2.1e-19 101.7 318 42.5
Carub.0007s0199 Capsella rubella HOM05D004950 ORTHO05D004838 3.6e-19 100.9 188 43.6
FAN23G1536 Fragaria x ananassa HOM05D004950 ORTHO05D004838 3.6e-19 100.9 145 53.1
Manes.12G130350 Manihot esculenta HOM05D002324 ORTHO05D002380 3.6e-19 100.9 409 32.0
PSO675G9110 Papaver somniferum HOM05D004950 ORTHO05D004838 4.7e-19 100.5 368 36.4
Glyma.18G015400 Glycine max HOM05D004950 ORTHO05D004838 6.2e-19 100.1 255 43.1
Nitab4.5_0010702g0020 Nicotiana tabacum HOM05D000288 ORTHO05D000173 6.2e-19 100.1 341 37.2
A01p00940 Brassica napus HOM05D004950 ORTHO05D004838 8.1e-19 99.8 146 41.8
BraA01t00092Z Brassica rapa HOM05D004950 ORTHO05D004838 8.1e-19 99.8 146 41.8
CsaV3_UNG223520 Cucumis sativus L. HOM05D004950 ORTHO05D004838 1.8e-18 98.6 193 38.3
Sed0023595 Sechium edule HOM05D004950 ORTHO05D004838 1.8e-18 98.6 409 43.8
BolC1t00104H Brassica oleracea HOM05D004950 ORTHO05D004838 5.2e-18 97.1 146 41.1
C01p01070 Brassica napus HOM05D004950 ORTHO05D004838 1.2e-17 95.9 146 40.4
FAN26G1097 Fragaria x ananassa HOM05D000001 ORTHO05D004838 1.2e-17 95.9 145 51.0
Rhsim10G0167200 Rhododendron simsii HOM05D004950 ORTHO05D004838 1.5e-17 95.5 707 35.5
Thhalv10027577m.g Eutrema salsugineum HOM05D004950 ORTHO05D004838 2.0e-17 95.1 126 45.2
BcaNung00933 Brassica carinata HOM05D004950 ORTHO05D004838 3.4e-17 94.4 140 41.4
TWI53G1075 Tripterygium wilfordii HOM05D004950 ORTHO05D004838 1.3e-16 92.4 129 45.0
A09p21730 Brassica napus HOM05D004950 ORTHO05D004838 1.7e-16 92.0 258 29.8
Zm00001eb401420 Zea mays HOM05D004950 ORTHO05D004838 2.2e-16 91.7 214 33.2
Zm00001eb006740 Zea mays HOM05D004950 ORTHO05D004838 3.7e-16 90.9 214 33.2
Thecc.01G096300 Theobroma cacao HOM05D004950 ORTHO05D004838 1.9e-15 88.6 292 39.4
BcaB02g10025 Brassica carinata HOM05D004950 ORTHO05D032427 5.4e-15 87.0 241 32.4
Gohir.D11G054550 Gossypium hirsutum HOM05D004950 ORTHO05D004838 9.2e-15 86.3 232 40.9
Oeu056639.1 Olea europaea HOM05D004950 ORTHO05D004838 1.6e-14 85.5 128 43.8
Aa31LG6G15210 Aethionema arabicum HOM05D004950 ORTHO05D004838 4.6e-14 84.0 212 41.5
Duzib147G1409 Durio zibethinus HOM05D004950 ORTHO05D004838 6.0e-14 83.6 300 38.7
C04p34940 Brassica napus HOM05D004950 ORTHO05D004838 1.0e-13 82.8 208 30.8
BolC4t25048H Brassica oleracea HOM05D004950 ORTHO05D004838 1.0e-13 82.8 208 30.8
HanXRQChr14g0445051 Helianthus annuus HOM05D004950 ORTHO05D004838 1.3e-13 82.4 130 41.5
Zm00001eb199080 Zea mays HOM05D004950 ORTHO05D004838 6.6e-13 80.1 205 30.2
Sopen05g029920 Solanum pennellii HOM05D004950 ORTHO05D004838 1.1e-12 79.3 358 36.0
Zm00001eb081260 Zea mays HOM05D020839 ORTHO05D004838 1.1e-12 79.3 215 34.9
Gohir.A11G204800 Gossypium hirsutum HOM05D004950 ORTHO05D004838 1.6e-11 75.5 396 30.8
Gohir.D10G104000 Gossypium hirsutum HOM05D004950 ORTHO05D004838 1.8e-10 72.0 155 46.5
Duzib264G0159 Durio zibethinus HOM05D004950 ORTHO05D004838 2.4e-10 71.6 407 38.8
Os08g0481100 Oryza sativa ssp. japonica HOM05D004950 ORTHO05D004838 3.1e-10 71.2 205 37.1
HPP92_002322 Vanilla planifolia HOM05D004950 ORTHO05D004838 3.1e-10 71.2 127 34.6
HanXRQChr14g0445041 Helianthus annuus HOM05D004950 ORTHO05D004838 6.8e-10 70.1 490 27.3
Gorai.007G059800 Gossypium raimondii HOM05D004950 ORTHO05D004838 1.5e-09 68.9 421 33.3
MBI02_g33232_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004838 1.5e-09 68.9 139 33.8
Peaxi162Scf00569g00049 Petunia axillaris HOM05D004950 ORTHO05D004838 1.5e-09 68.9 487 29.0
Sed0005265 Sechium edule HOM05D004950 ORTHO05D004838 2.0e-09 68.6 126 52.4
PGSC0003DMG400020690 Solanum tuberosum HOM05D004950 ORTHO05D004838 2.0e-09 68.6 412 23.3
Os04g0450900 Oryza sativa ssp. japonica HOM05D020839 ORTHO05D004838 2.6e-09 68.2 215 29.8
CAN.G33.13 Capsicum annuum HOM05D004950 ORTHO05D004838 3.4e-09 67.8 100 40.0
Os03g0189300 Oryza sativa ssp. japonica HOM05D004950 ORTHO05D004838 3.4e-09 67.8 260 26.5
Gohir.D11G219100 Gossypium hirsutum HOM05D004950 ORTHO05D004838 7.6e-09 66.6 394 32.5
PGR042G1453 Punica granatum HOM05D002657 ORTHO05D003059 7.6e-09 66.6 247 36.0
Gohir.A10G085000 Gossypium hirsutum HOM05D004950 ORTHO05D004838 9.9e-09 66.2 155 44.5
Gorai.011G113500 Gossypium raimondii HOM05D004950 ORTHO05D004838 1.7e-08 65.5 155 44.5
Gohir.A02G129300 Gossypium hirsutum HOM05D004950 ORTHO05D004838 2.9e-08 64.7 400 37.0
Nn1g05150 Nelumbo nucifera HOM05D002657 ORTHO05D003059 2.9e-08 64.7 242 32.6
HanXRQChr10g0314761 Helianthus annuus HOM05D004950 ORTHO05D004838 1.9e-07 62.0 644 21.0
Nitab4.5_0000571g0050 Nicotiana tabacum HOM05D004950 ORTHO05D004838 1.9e-07 62.0 239 50.2
PSO063G0986 Papaver somniferum HOM05D002657 ORTHO05D003059 1.9e-07 62.0 256 34.0
Zm00001eb423860 Zea mays HOM05D020839 ORTHO05D004838 5.4e-07 60.5 211 30.8
TWI60G0601 Tripterygium wilfordii HOM05D002657 ORTHO05D003059 7.1e-07 60.1 256 26.6
Dinv17247 Davidia involucrata HOM05D002657 ORTHO05D003059 1.2e-06 59.3 247 34.4
Gorai.003G041200 Gossypium raimondii HOM05D000001 ORTHO05D000003 1.2e-06 59.3 400 38.2


User provided reference genes

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