Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold115G32163 Striga asiatica HOM05D003129 ORTHO05D004326 4.8e-58 227.6 116 100.0
SGA_v2.0_scaffold147G36342 Striga asiatica HOM05D003129 ORTHO05D000610 2.4e-57 225.3 116 98.3
SalBow7G1178 Salvia bowleyana HOM05D003129 ORTHO05D004326 2.1e-37 159.1 107 75.7
MSTRG.14212 Avicennia marina HOM05D003129 ORTHO05D004326 2.7e-37 158.7 106 77.4
SalBow7G0623 Salvia bowleyana HOM05D003129 ORTHO05D004326 4.7e-37 157.9 105 77.1
SGA_v2.0_scaffold130G34337 Striga asiatica HOM05D003129 ORTHO05D004326 7.9e-37 157.1 108 74.1
unitig_52.g17399 Utricularia gibba HOM05D003129 ORTHO05D004326 8.8e-36 153.7 89 82.0
CAN.G1119.14 Capsicum annuum HOM05D003129 ORTHO05D004326 2.8e-34 148.7 89 82.0
unitig_0.g2268 Utricularia gibba HOM05D003129 ORTHO05D004326 3.7e-34 148.3 86 81.4
unitig_699.g19233 Utricularia gibba HOM05D003129 ORTHO05D004326 8.2e-34 147.1 106 67.0
Solyc10g007150.4 Solanum lycopersicum HOM05D003129 ORTHO05D004326 1.1e-33 146.7 106 71.7
Sopen10g003050 Solanum pennellii HOM05D003129 ORTHO05D004326 1.1e-33 146.7 106 71.7
Dinv14957 Davidia involucrata HOM05D003129 ORTHO05D004326 5.3e-33 144.4 89 78.7
Cc05_g11500 Coffea canephora HOM05D003129 ORTHO05D004326 1.5e-32 142.9 106 67.0
Lj1C835G5 Lonicera japonica HOM05D003129 ORTHO05D004326 2.0e-32 142.5 89 76.4
DCAR_019584 Daucus carota HOM05D003129 ORTHO05D004326 7.7e-32 140.6 89 77.5
GSVIVG01014247001 Vitis vinifera HOM05D003129 ORTHO05D004326 1.7e-31 139.4 89 75.3
Dinv40631 Davidia involucrata HOM05D003129 ORTHO05D004326 3.8e-31 138.3 123 61.0
Migut.H01970 Erythranthe guttata HOM05D003129 ORTHO05D004326 8.5e-31 137.1 106 66.0
Manes.17G052000 Manihot esculenta HOM05D003129 ORTHO05D004326 8.5e-31 137.1 89 74.2
Rhsim02G0138500 Rhododendron simsii HOM05D003129 ORTHO05D004326 8.5e-31 137.1 88 76.1
Sc05g0007260 Simmondsia chinensis HOM05D003129 ORTHO05D004326 8.5e-31 137.1 89 73.0
vmacro15954 Vaccinium macrocarpon HOM05D003129 ORTHO05D004326 8.5e-31 137.1 88 76.1
AUR62014921 Chenopodium quinoa HOM05D003129 ORTHO05D004326 1.5e-30 136.3 89 73.0
DCAR_006587 Daucus carota HOM05D003129 ORTHO05D004326 1.9e-30 136.0 89 74.2
HanXRQChr11g0327221 Helianthus annuus HOM05D003129 ORTHO05D004326 1.9e-30 136.0 89 75.3
GSVIVG01021154001 Vitis vinifera HOM05D003129 ORTHO05D004326 1.9e-30 136.0 89 73.0
Hma1.2p1_0155F.1_g068510 Hydrangea macrophylla HOM05D003129 ORTHO05D004326 2.5e-30 135.6 89 75.3
Hma1.2p1_0608F.1_g188220 Hydrangea macrophylla HOM05D003129 ORTHO05D004326 2.5e-30 135.6 89 75.3
Lj2A294T71 Lonicera japonica HOM05D003129 ORTHO05D004326 2.5e-30 135.6 89 74.2
AUR62031128 Chenopodium quinoa HOM05D003129 ORTHO05D004326 3.2e-30 135.2 89 71.9
HanXRQChr04g0117191 Helianthus annuus HOM05D003129 ORTHO05D004326 3.2e-30 135.2 89 74.2
Lsat_1_v5_gn_4_50661 Lactuca sativa HOM05D003129 ORTHO05D004326 3.2e-30 135.2 89 74.2
MD05G1306200 Malus domestica HOM05D003129 ORTHO05D004326 3.2e-30 135.2 89 73.0
MD10G1285200 Malus domestica HOM05D003129 ORTHO05D004326 3.2e-30 135.2 89 73.0
Oeu062328.1 Olea europaea HOM05D003129 ORTHO05D000610 4.2e-30 134.8 88 75.0
Migut.M01074 Erythranthe guttata HOM05D003129 ORTHO05D004326 5.5e-30 134.4 88 72.7
RcHm_v2.0_Chr5g0009911 Rosa chinensis HOM05D003129 ORTHO05D004326 5.5e-30 134.4 89 74.2
MSTRG.15833 Avicennia marina HOM05D003129 ORTHO05D004326 7.2e-30 134.0 89 73.0
CANSAT35G1487 Cannabis sativa HOM05D003129 ORTHO05D004326 9.4e-30 133.7 89 73.0
TAR624G0766 Trochodendron aralioides HOM05D003129 ORTHO05D004326 9.4e-30 133.7 89 73.0
Atru.chr10.1742 Acer truncatum HOM05D003129 ORTHO05D004326 1.6e-29 132.9 89 73.0
Nn1g06337 Nelumbo nucifera HOM05D003129 ORTHO05D004326 1.6e-29 132.9 89 71.9
TAR627G0274 Trochodendron aralioides HOM05D003129 ORTHO05D004326 1.6e-29 132.9 89 71.9
Peaxi162Scf00027g00106 Petunia axillaris HOM05D003129 ORTHO05D004326 2.1e-29 132.5 106 65.1
Actinidia18785 Actinidia chinensis HOM05D003129 ORTHO05D004326 2.7e-29 132.1 93 72.0
Ah.10g033800 Amaranthus hybridus HOM05D003129 ORTHO05D004326 2.7e-29 132.1 89 70.8
FvH4_3g08240 Fragaria vesca HOM05D003129 ORTHO05D004326 2.7e-29 132.1 89 73.0
FAN11G2423 Fragaria x ananassa HOM05D003129 ORTHO05D004326 2.7e-29 132.1 89 73.0
Aqoxy1G02212 Aquilegia oxysepala HOM05D003129 ORTHO05D004326 3.6e-29 131.7 89 67.4
FAN16G1697 Fragaria x ananassa HOM05D003129 ORTHO05D004326 3.6e-29 131.7 89 73.0
FAN21G0899 Fragaria x ananassa HOM05D003129 ORTHO05D004326 3.6e-29 131.7 89 73.0
CSS0027425 Camellia sinensis var. sinensis HOM05D003129 ORTHO05D004326 4.7e-29 131.3 113 61.9
HanXRQChr15g0481311 Helianthus annuus HOM05D003129 ORTHO05D004326 4.7e-29 131.3 89 73.0
Rhsim04G0023800 Rhododendron simsii HOM05D003129 ORTHO05D004326 4.7e-29 131.3 90 75.6
vmacro09507 Vaccinium macrocarpon HOM05D003129 ORTHO05D004326 6.1e-29 131.0 92 75.0
ECA236G4078 Erigeron canadensis HOM05D003129 ORTHO05D004326 8.0e-29 130.6 89 71.9
Prupe.4G056400 Prunus persica HOM05D003129 ORTHO05D004326 8.0e-29 130.6 88 73.9
SalBow8G3208 Salvia bowleyana HOM05D003129 ORTHO05D004326 8.0e-29 130.6 89 70.8
Dinv17376 Davidia involucrata HOM05D003129 ORTHO05D004326 1.0e-28 130.2 125 56.8
Cfa000558 Carpinus fangiana HOM05D003129 ORTHO05D004326 1.4e-28 129.8 89 71.9
Haze_06317 Corylus avellana HOM05D003129 ORTHO05D004326 1.4e-28 129.8 89 71.9
FAN25G1535 Fragaria x ananassa HOM05D003129 ORTHO05D004326 1.4e-28 129.8 89 71.9
MBI06_g25719_MAGBIO Magnolia biondii HOM05D003129 ORTHO05D004326 1.8e-28 129.4 89 68.5
Hund21191 Selenicereus undatus HOM05D003129 ORTHO05D004326 1.8e-28 129.4 106 61.3
CiPaw.09G066600 Carya illinoinensis HOM05D003129 ORTHO05D004326 3.0e-28 128.6 89 70.8
CiPaw.10G055300 Carya illinoinensis HOM05D003129 ORTHO05D004326 3.0e-28 128.6 89 70.8
Medtr4g087935 Medicago truncatula HOM05D003129 ORTHO05D004326 3.9e-28 128.3 89 71.9
PSO675G6268 Papaver somniferum HOM05D003129 ORTHO05D004326 5.2e-28 127.9 89 67.4
Ca_26044_v3 Cicer arietinum L. HOM05D003129 ORTHO05D004326 6.7e-28 127.5 89 71.9
PSO541G6176 Papaver somniferum HOM05D003129 ORTHO05D004326 6.7e-28 127.5 89 66.3
Psat7g118240 Pisum sativum HOM05D003129 ORTHO05D004326 6.7e-28 127.5 89 71.9
Glyma.13G172200 Glycine max HOM05D003129 ORTHO05D004326 8.8e-28 127.1 89 70.8
Solyc10g008800.4 Solanum lycopersicum HOM05D003129 ORTHO05D004326 8.8e-28 127.1 89 70.8
Sopen10g004580 Solanum pennellii HOM05D003129 ORTHO05D004326 8.8e-28 127.1 89 70.8
Gohir.D06G208800 Gossypium hirsutum HOM05D003129 ORTHO05D004326 1.1e-27 126.7 88 70.5
Gorai.010G242700 Gossypium raimondii HOM05D003129 ORTHO05D004326 1.1e-27 126.7 88 70.5
CDE02G2353 Ceratophyllum demersum HOM05D003129 ORTHO05D004326 1.5e-27 126.3 89 65.2
Duzib192G0848 Durio zibethinus HOM05D003129 ORTHO05D004326 1.5e-27 126.3 88 70.5
Duzib235G0248 Durio zibethinus HOM05D003129 ORTHO05D004326 1.5e-27 126.3 88 70.5
Gohir.A10G029400 Gossypium hirsutum HOM05D003129 ORTHO05D004326 1.5e-27 126.3 88 70.5
Gohir.D10G029900 Gossypium hirsutum HOM05D003129 ORTHO05D004326 1.5e-27 126.3 88 70.5
Gorai.011G031800 Gossypium raimondii HOM05D003129 ORTHO05D004326 1.5e-27 126.3 88 70.5
Thecc.06G176900 Theobroma cacao HOM05D003129 ORTHO05D004326 1.5e-27 126.3 88 70.5
Nitab4.5_0002114g0030 Nicotiana tabacum HOM05D003129 ORTHO05D004326 2.0e-27 125.9 89 70.8
ClCG01G023490 Citrullus lanatus HOM05D003129 ORTHO05D004326 3.3e-27 125.2 89 68.5
MELO3C007237.2 Cucumis melo HOM05D003129 ORTHO05D004326 3.3e-27 125.2 89 68.5
CsaV3_6G050610 Cucumis sativus L. HOM05D003129 ORTHO05D004326 3.3e-27 125.2 89 68.5
Gohir.A06G201000 Gossypium hirsutum HOM05D003129 ORTHO05D004326 3.3e-27 125.2 88 69.3
Lj4g0011162 Lotus japonicus HOM05D003129 ORTHO05D004326 3.3e-27 125.2 89 69.7
Phvul.003G057200 Phaseolus vulgaris HOM05D003129 ORTHO05D004326 3.3e-27 125.2 89 69.7
VMungo0251G0702 Vigna mungo HOM05D003129 ORTHO05D004326 3.3e-27 125.2 89 69.7
Glyma.07G203600 Glycine max HOM05D003129 ORTHO05D004326 4.4e-27 124.8 89 68.5
Pp3c3_22040 Physcomitrium patens HOM05D003129 ORTHO05D004326 4.4e-27 124.8 109 56.9
Lalb_Chr05g0218661 Lupinus albus HOM05D003129 ORTHO05D004326 5.7e-27 124.4 89 69.7
PGR004G1912 Punica granatum HOM05D003129 ORTHO05D004326 5.7e-27 124.4 89 68.5
arahy.Tifrunner.gnm1.ann1.32PFVB Arachis hypogaea HOM05D003129 ORTHO05D004326 7.4e-27 124.0 89 68.5
arahy.Tifrunner.gnm1.ann1.X0U75U Arachis hypogaea HOM05D003129 ORTHO05D004326 7.4e-27 124.0 89 68.5
Lalb_Chr09g0327941 Lupinus albus HOM05D003129 ORTHO05D004326 7.4e-27 124.0 89 68.5
Sed0018741 Sechium edule HOM05D003129 ORTHO05D004326 7.4e-27 124.0 89 66.3
TPR.G40554 Trifolium pratense HOM05D003129 ORTHO05D004326 1.7e-26 122.9 89 69.7
Peaxi162Scf00269g00314 Petunia axillaris HOM05D003129 ORTHO05D004326 3.7e-26 121.7 89 69.7
MBI07_g06431_MAGBIO Magnolia biondii HOM05D003129 ORTHO05D000022 4.8e-26 121.3 90 64.4
TWI38G1536 Tripterygium wilfordii HOM05D003129 ORTHO05D004326 4.8e-26 121.3 89 66.3
TWI63G0550 Tripterygium wilfordii HOM05D003129 ORTHO05D004326 4.8e-26 121.3 89 66.3
Mapoly0091s0056 Marchantia polymorpha HOM05D003129 ORTHO05D004326 6.3e-26 120.9 89 62.9
TWI38G0456 Tripterygium wilfordii HOM05D003129 ORTHO05D004326 1.4e-25 119.8 89 65.2
Aqoxy4G00539 Aquilegia oxysepala HOM05D003129 ORTHO05D004326 3.1e-25 118.6 89 64.0
THA.LOC104812630 Tarenaya hassleriana HOM05D003129 ORTHO05D004326 4.1e-25 118.2 89 65.2
CBR_g34638 Chara braunii HOM05D003129 ORTHO05D004326 5.3e-25 117.9 88 62.5
Eucgr.D00571 Eucalyptus grandis HOM05D003129 ORTHO05D004326 5.3e-25 117.9 89 65.2
Aa31LG9G13850 Aethionema arabicum HOM05D003129 ORTHO05D004326 7.0e-25 117.5 88 64.8
COL.COLO4_31382 Corchorus olitorius HOM05D003129 ORTHO05D004326 7.0e-25 117.5 90 65.6
THA.LOC104814245 Tarenaya hassleriana HOM05D003129 ORTHO05D004326 7.0e-25 117.5 89 65.2
Aa31LG6G11500 Aethionema arabicum HOM05D003129 ORTHO05D004326 9.1e-25 117.1 87 66.7
SHI34906 Sapria himalayana HOM05D003129 ORTHO05D000610 1.6e-24 116.3 90 66.7
AT2G34040 Arabidopsis thaliana HOM05D003129 ORTHO05D004326 5.9e-24 114.4 89 62.9
Carub.0004s1567 Capsella rubella HOM05D003129 ORTHO05D004326 1.0e-23 113.6 89 61.8
Thhalv10016466m.g Eutrema salsugineum HOM05D003129 ORTHO05D004326 1.0e-23 113.6 89 61.8
Sp4g16390 Schrenkiella parvula HOM05D003129 ORTHO05D004326 1.3e-23 113.2 89 61.8
HPP92_002946 Vanilla planifolia HOM05D003129 ORTHO05D004326 1.3e-23 113.2 89 59.6
AL4G29920 Arabidopsis lyrata HOM05D003129 ORTHO05D004326 1.7e-23 112.8 89 61.8
BcaB01g03907 Brassica carinata HOM05D003129 ORTHO05D004326 2.2e-23 112.5 89 59.6
C04p15070 Brassica napus HOM05D003129 ORTHO05D004326 2.2e-23 112.5 89 61.8
CARHR128120 Cardamine hirsuta HOM05D003129 ORTHO05D004326 2.9e-23 112.1 88 62.5
ATR0602G129 Amborella trichopoda HOM05D003129 ORTHO05D004326 5.0e-23 111.3 89 57.3
ECA234G1267 Erigeron canadensis HOM05D003129 ORTHO05D004326 8.5e-23 110.5 89 62.9
AagrBONN_evm.TU.Sc2ySwM_228.5751 Anthoceros agrestis HOM05D003129 ORTHO05D004326 1.1e-22 110.2 89 57.3
BcaC01g05811 Brassica carinata HOM05D003129 ORTHO05D004326 1.1e-22 110.2 89 57.3
A03p19000 Brassica napus HOM05D003129 ORTHO05D004326 1.1e-22 110.2 89 57.3
C03p22160 Brassica napus HOM05D003129 ORTHO05D004326 1.1e-22 110.2 89 57.3
BolC3t14601H Brassica oleracea HOM05D003129 ORTHO05D004326 1.1e-22 110.2 89 57.3
BraA03t11158Z Brassica rapa HOM05D003129 ORTHO05D004326 1.1e-22 110.2 89 57.3
CSS0050257 Camellia sinensis var. sinensis HOM05D003129 ORTHO05D004326 4.2e-22 108.2 112 53.6
SMO364G0322 Selaginella moellendorffii HOM05D003129 ORTHO05D004326 5.5e-22 107.8 89 53.9
Carub.0001s2722 Capsella rubella HOM05D003129 ORTHO05D004326 7.2e-22 107.5 88 55.7
AL1G42740 Arabidopsis lyrata HOM05D003129 ORTHO05D004326 1.2e-21 106.7 88 55.7
AT1G29030 Arabidopsis thaliana HOM05D003129 ORTHO05D004326 1.6e-21 106.3 88 55.7
Sed0013050 Sechium edule HOM05D003129 ORTHO05D004326 3.6e-21 105.1 89 56.2
CARHR028240 Cardamine hirsuta HOM05D003129 ORTHO05D004326 4.7e-21 104.8 88 54.5
Sp1g24960 Schrenkiella parvula HOM05D003129 ORTHO05D004326 1.0e-20 103.6 87 56.3
Thhalv10007287m.g Eutrema salsugineum HOM05D003129 ORTHO05D004326 1.8e-20 102.8 87 56.3
EL10Ac8g20476 Beta vulgaris HOM05D003129 ORTHO05D004326 4.4e-19 98.2 168 37.5
Cpa.g.sc7.28 Carica papaya HOM05D003129 ORTHO05D004326 7.5e-19 97.4 86 58.1
Nitab4.5_0001208g0080 Nicotiana tabacum HOM05D003129 ORTHO05D004326 9.7e-19 97.1 56 85.7
Cpa.g.c47045 Carica papaya HOM05D003129 ORTHO05D000610 1.3e-18 96.7 81 61.7
Os02g0313400 Oryza sativa ssp. japonica HOM05D003129 ORTHO05D004326 1.3e-18 96.7 89 56.2
Zm00001eb203280 Zea mays HOM05D003129 ORTHO05D004326 2.2e-18 95.9 106 49.1
Zm00001eb235260 Zea mays HOM05D003129 ORTHO05D004326 2.8e-18 95.5 106 48.1
TPR.G16267 Trifolium pratense HOM05D003129 ORTHO05D004326 8.3e-18 94.0 85 56.5
Ciclev10014801m.g Citrus clementina HOM05D003129 ORTHO05D004326 7.0e-17 90.9 89 52.8
Nn1g04301 Nelumbo nucifera HOM05D003129 ORTHO05D004326 2.0e-16 89.4 56 78.6
Oeu043092.1 Olea europaea HOM05D003129 ORTHO05D004326 1.3e-15 86.7 54 79.6
VMungo1215G1428 Vigna mungo HOM05D003129 ORTHO05D000610 1.5e-14 83.2 64 64.1
Gohir.A06G200950 Gossypium hirsutum HOM05D003129 ORTHO05D004326 5.5e-14 81.3 88 51.1
Potri.004G052300 Populus trichocarpa HOM05D003129 ORTHO05D004326 9.4e-14 80.5 89 50.6
Sabra04G0033100 Salix brachista HOM05D003129 ORTHO05D004326 9.4e-14 80.5 89 50.6
Potri.011G062500 Populus trichocarpa HOM05D003129 ORTHO05D004326 3.6e-13 78.6 89 50.6
RcHm_v2.0_Chr1g0362691 Rosa chinensis HOM05D003129 ORTHO05D004326 3.6e-13 78.6 97 50.5
Sabra11G0044300 Salix brachista HOM05D003129 ORTHO05D004326 3.6e-13 78.6 89 50.6
AT3G19515 Arabidopsis thaliana HOM05D003129 ORTHO05D004326 1.5e-11 73.2 90 43.3
VMungo0251G3153 Vigna mungo HOM05D003129 ORTHO05D436849 7.5e-11 70.9 55 65.5
Actinidia35228 Actinidia chinensis HOM05D003129 ORTHO05D004326 1.7e-10 69.7 90 48.9
BolC4t23083H Brassica oleracea HOM05D003129 ORTHO05D004326 8.3e-10 67.4 62 59.7
MBI16_g34659_MAGBIO Magnolia biondii HOM05D003129 ORTHO05D244547 1.6e-08 63.2 44 68.2
SGA_v2.0_scaffold66G22240 Striga asiatica HOM05D003129 ORTHO05D004326 2.7e-08 62.4 89 42.7
Carub.0003s1933 Capsella rubella HOM05D003129 ORTHO05D014420 3.8e-07 58.5 86 43.0
RcHm_v2.0_Chr7g0217661 Rosa chinensis HOM05D003129 ORTHO05D004326 1.5e-06 56.6 49 65.3


User provided reference genes

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