Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 1.5e-178 629.4 329 100.0
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 6.4e-108 394.8 333 64.0
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 1.7e-105 386.7 333 61.3
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 1.5e-104 383.6 334 60.8
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 2.4e-102 376.3 314 62.4
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 2.4e-99 366.3 340 57.4
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 4.8e-95 352.1 338 55.0
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 4.0e-94 349.0 338 54.4
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 2.0e-93 346.7 313 58.5
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 8.4e-92 341.3 307 59.0
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 5.5e-91 338.6 262 62.6
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 9.3e-91 337.8 266 63.2
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 2.7e-90 336.3 339 54.0
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 3.5e-90 335.9 264 61.7
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 1.8e-89 333.6 344 51.7
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 3.9e-89 332.4 321 55.8
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 5.1e-89 332.0 328 54.6
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 6.7e-89 331.6 263 62.4
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 6.7e-89 331.6 263 62.4
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 6.7e-89 331.6 262 61.5
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 6.7e-89 331.6 277 59.6
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 1.1e-88 330.9 263 62.7
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 4.3e-88 328.9 323 54.5
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 4.3e-88 328.9 265 61.9
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 5.6e-88 328.6 332 52.1
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 5.6e-88 328.6 343 53.1
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 9.6e-88 327.8 341 51.9
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 9.6e-88 327.8 262 60.7
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 1.3e-87 327.4 333 54.1
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 1.3e-87 327.4 329 53.5
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 2.8e-87 326.2 335 54.3
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 2.8e-87 326.2 346 51.4
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 3.7e-87 325.9 333 54.1
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 4.8e-87 325.5 339 53.1
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 4.8e-87 325.5 328 53.4
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 6.2e-87 325.1 343 53.4
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 8.2e-87 324.7 330 53.9
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 1.8e-86 323.6 343 51.9
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 2.4e-86 323.2 263 60.1
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 3.1e-86 322.8 263 59.3
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 6.9e-86 321.6 263 62.0
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 6.9e-86 321.6 267 59.9
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 9.0e-86 321.2 333 52.3
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 1.2e-85 320.9 326 51.8
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 1.5e-85 320.5 343 51.3
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 2.0e-85 320.1 329 51.7
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 3.4e-85 319.3 281 58.7
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 3.4e-85 319.3 281 58.7
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 3.4e-85 319.3 281 58.7
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 3.4e-85 319.3 335 51.3
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 4.5e-85 318.9 333 54.1
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 5.8e-85 318.5 265 60.8
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 7.6e-85 318.2 263 62.0
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 7.6e-85 318.2 263 62.0
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 1.0e-84 317.8 265 60.4
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.0e-84 317.8 265 60.8
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.3e-84 317.4 264 58.7
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 1.3e-84 317.4 343 51.3
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 1.7e-84 317.0 342 50.3
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 1.7e-84 317.0 339 51.9
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.7e-84 317.0 264 59.1
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.7e-84 317.0 343 51.6
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 4.9e-84 315.5 344 51.7
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 6.5e-84 315.1 343 51.9
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 6.5e-84 315.1 334 51.2
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 6.5e-84 315.1 333 52.0
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 8.4e-84 314.7 332 50.9
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 1.1e-83 314.3 264 58.3
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 1.4e-83 313.9 340 51.8
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 1.4e-83 313.9 339 51.0
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 1.9e-83 313.5 343 51.6
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 1.9e-83 313.5 343 51.6
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.9e-83 313.5 340 51.2
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 4.2e-83 312.4 345 51.3
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 4.2e-83 312.4 329 52.3
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 4.2e-83 312.4 266 59.8
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 7.1e-83 311.6 358 47.5
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.6e-82 310.5 333 51.7
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 2.1e-82 310.1 266 57.9
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 2.7e-82 309.7 336 50.6
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 2.7e-82 309.7 332 50.0
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 6.0e-82 308.5 332 52.7
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 7.9e-82 308.1 343 50.7
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 7.9e-82 308.1 343 50.7
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 1.0e-81 307.8 342 50.3
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 1.3e-81 307.4 264 58.3
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 5.1e-81 305.4 332 49.4
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 6.7e-81 305.1 316 53.5
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 2.5e-80 303.1 350 48.3
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 2.5e-80 303.1 330 50.6
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 2.5e-80 303.1 253 58.9
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 5.7e-80 302.0 264 57.2
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 7.4e-80 301.6 266 56.4
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 7.4e-80 301.6 255 58.8
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 2.2e-79 300.1 323 52.9
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 3.7e-79 299.3 323 52.6
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 6.3e-79 298.5 327 49.2
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 8.2e-79 298.1 318 51.3
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 1.1e-78 297.7 255 60.0
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.1e-78 297.7 331 49.8
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 1.4e-78 297.4 321 51.4
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 3.1e-78 296.2 262 54.2
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 4.1e-78 295.8 321 48.6
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 4.1e-78 295.8 321 48.6
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 9.0e-78 294.7 331 48.6
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 3.4e-77 292.7 345 48.7
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 1.0e-76 291.2 333 50.5
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 2.2e-76 290.0 320 50.9
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 2.5e-75 286.6 260 58.1
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 1.2e-74 284.3 232 59.1
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 7.9e-74 281.6 263 54.8
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 2.3e-73 280.0 334 46.1
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 2.5e-72 276.6 268 53.4
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 3.3e-72 276.2 336 48.8
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 9.7e-72 274.6 262 53.8
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 1.1e-70 271.2 261 55.2
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 6.9e-70 268.5 330 46.7
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 1.5e-69 267.3 264 54.9
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 4.5e-69 265.8 264 53.8
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 4.5e-69 265.8 314 46.2
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 1.3e-68 264.2 333 45.9
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 8.5e-68 261.5 262 52.3
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 1.9e-67 260.4 341 45.7
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 5.5e-67 258.8 187 64.2
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 1.4e-65 254.2 256 52.7
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 1.1e-64 251.1 265 48.7
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 5.7e-64 248.8 337 45.1
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.7e-63 247.3 199 59.8
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 2.2e-63 246.9 187 63.1
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 2.8e-63 246.5 264 45.8
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 1.1e-62 244.6 265 47.9
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.8e-62 243.8 258 49.6
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 3.1e-62 243.0 187 61.5
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 4.1e-62 242.7 265 46.0
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 5.3e-62 242.3 269 46.5
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 7.0e-62 241.9 266 48.1
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 2.0e-61 240.4 340 42.6
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 4.5e-61 239.2 265 49.4
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 7.7e-61 238.4 265 47.2
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.3e-60 237.7 187 60.4
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.3e-60 237.7 267 48.3
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 2.9e-60 236.5 265 46.8
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 6.5e-60 235.3 175 61.1
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 3.2e-59 233.0 219 53.9
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 9.4e-59 231.5 267 46.4
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 9.4e-59 231.5 267 46.4
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 8.0e-58 228.4 197 54.3
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.8e-57 227.3 192 58.3
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 1.8e-57 227.3 286 46.5
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.5e-56 224.2 267 43.4
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 1.3e-55 221.1 189 56.1
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 8.2e-55 218.4 273 47.6
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.8e-54 217.2 184 58.7
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 3.2e-51 206.5 181 58.0
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 5.5e-51 205.7 269 43.1
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 2.1e-50 203.8 252 46.4
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 3.0e-49 199.9 184 54.9
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 3.6e-42 176.4 264 37.5
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 1.4e-38 164.5 223 46.6
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 3.6e-34 149.8 321 34.0
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 1.7e-31 141.0 181 42.5
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 1.4e-30 137.9 211 41.7
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 6.6e-28 129.0 101 61.4
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 5.6e-27 125.9 144 51.4
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 8.0e-26 122.1 102 62.7
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 1.0e-25 121.7 95 61.1
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 2.6e-24 117.1 89 59.6
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 5.0e-20 102.8 259 31.3
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 1.6e-18 97.8 105 49.5
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 4.0e-17 93.2 81 51.9
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 5.2e-17 92.8 73 63.0
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 5.8e-16 89.4 80 50.0
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 7.5e-16 89.0 76 56.6
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 2.7e-13 80.5 73 61.6
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 6.0e-13 79.3 74 59.5
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 1.0e-12 78.6 180 35.6
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 1.5e-11 74.7 49 71.4
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 1.2e-10 71.6 72 48.6
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 1.8e-09 67.8 55 61.8


User provided reference genes

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