Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 2.6e-275 951.4 481 100.0
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 1.3e-239 832.8 476 88.0
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 1.1e-233 813.1 474 85.9
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 2.2e-221 772.3 482 80.7
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 4.1e-220 768.1 479 79.5
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 2.0e-219 765.8 487 78.6
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 3.5e-219 765.0 479 80.0
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 7.7e-219 763.8 474 81.0
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 7.7e-219 763.8 482 79.7
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 2.5e-217 758.8 438 86.8
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 3.2e-217 758.4 438 86.8
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 5.5e-217 757.7 436 86.7
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 7.2e-217 757.3 438 86.5
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 6.1e-216 754.2 438 85.8
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 8.0e-216 753.8 438 86.1
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 8.0e-216 753.8 482 79.9
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 8.0e-216 753.8 484 78.7
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.4e-215 753.1 469 80.2
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 8.8e-215 750.4 438 84.0
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 1.1e-214 750.0 479 79.1
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 2.0e-214 749.2 448 83.3
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 5.7e-214 747.7 484 77.9
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 2.2e-213 745.7 482 79.0
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 2.8e-213 745.3 442 83.5
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 4.8e-213 744.6 455 81.1
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 4.8e-213 744.6 436 83.7
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 6.3e-213 744.2 437 84.2
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 6.3e-213 744.2 445 82.5
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 8.2e-213 743.8 483 78.1
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 1.8e-212 742.7 490 77.1
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 3.1e-212 741.9 434 84.8
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 4.1e-212 741.5 432 85.0
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 9.1e-212 740.3 447 82.6
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 1.6e-211 739.6 474 78.1
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 2.0e-211 739.2 439 82.9
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 3.5e-211 738.4 487 76.2
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 3.5e-211 738.4 476 77.9
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 3.5e-211 738.4 481 78.2
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 4.5e-211 738.0 484 77.3
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 4.5e-211 738.0 484 76.9
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 4.5e-211 738.0 433 84.5
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 1.0e-210 736.9 434 83.2
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 1.7e-210 736.1 434 84.6
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 2.2e-210 735.7 434 84.1
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 2.2e-210 735.7 459 79.7
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 3.8e-210 734.9 434 84.6
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 5.0e-210 734.6 436 83.5
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 6.5e-210 734.2 432 84.3
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 8.5e-210 733.8 489 76.9
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 1.1e-209 733.4 456 80.7
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 1.5e-209 733.0 438 82.9
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 1.9e-209 732.6 434 84.1
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 1.9e-209 732.6 446 80.7
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.2e-209 731.5 440 82.3
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 5.5e-209 731.1 432 83.6
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 5.5e-209 731.1 434 83.9
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 5.5e-209 731.1 454 79.7
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 7.2e-209 730.7 436 83.3
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 9.4e-209 730.3 484 76.7
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 1.2e-208 729.9 436 81.4
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 1.2e-208 729.9 457 78.6
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 2.1e-208 729.2 461 79.6
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 4.7e-208 728.0 437 81.5
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 6.1e-208 727.6 436 81.2
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 1.0e-207 726.9 440 81.6
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 1.4e-207 726.5 461 78.7
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 1.4e-207 726.5 444 81.3
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.4e-207 726.5 434 82.5
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.8e-207 726.1 428 83.6
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 2.3e-207 725.7 434 82.5
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 3.0e-207 725.3 433 82.2
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 5.2e-207 724.5 434 82.7
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 6.7e-207 724.2 438 82.6
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 1.2e-206 723.4 436 81.9
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 2.0e-206 722.6 434 81.8
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 2.6e-206 722.2 466 77.9
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 3.3e-206 721.8 434 82.0
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 4.4e-206 721.5 433 82.9
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 5.7e-206 721.1 434 82.0
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 5.7e-206 721.1 437 80.8
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 7.5e-206 720.7 437 80.8
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 7.5e-206 720.7 444 80.9
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 7.5e-206 720.7 481 76.1
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 9.7e-206 720.3 434 82.0
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 1.3e-205 719.9 431 83.1
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 1.3e-205 719.9 434 82.3
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 2.8e-205 718.8 434 81.8
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 2.8e-205 718.8 434 81.8
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 3.7e-205 718.4 432 81.5
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 3.7e-205 718.4 432 82.2
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 6.3e-205 717.6 440 81.4
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 6.3e-205 717.6 481 75.1
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 1.4e-204 716.5 434 81.3
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 1.4e-204 716.5 434 81.3
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 1.8e-204 716.1 434 81.6
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 3.1e-204 715.3 434 81.6
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 9.1e-204 713.8 434 81.3
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 1.2e-203 713.4 436 81.0
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.2e-203 713.4 432 80.6
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 2.0e-203 712.6 482 75.1
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 2.7e-203 712.2 434 81.8
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 3.5e-203 711.8 434 80.9
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 8.5e-202 707.2 431 80.3
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 1.9e-201 706.1 446 80.5
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 1.9e-201 706.1 456 78.5
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 3.6e-200 701.8 444 78.8
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 4.7e-200 701.4 484 74.4
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 6.8e-199 697.6 434 80.0
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 6.8e-199 697.6 481 74.0
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 1.5e-198 696.4 485 74.2
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.2e-197 692.6 484 74.0
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 2.8e-197 692.2 436 78.0
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 3.7e-197 691.8 437 78.5
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 1.5e-193 679.9 479 73.9
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 2.1e-192 676.0 405 82.0
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 2.3e-191 672.5 383 85.6
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 7.8e-187 657.5 437 74.1
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 4.9e-181 638.3 432 75.5
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 6.4e-181 637.9 433 73.2
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 2.7e-179 632.5 437 72.1
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 1.1e-177 627.1 465 69.0
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 4.3e-177 625.2 427 73.8
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 1.7e-170 603.2 440 69.3
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 4.7e-168 595.1 427 69.6
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 3.7e-165 585.5 427 68.1
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 2.4e-164 582.8 348 82.8
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 1.5e-158 563.5 480 64.0
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 4.6e-155 552.0 428 65.4
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 5.1e-146 521.9 318 81.8
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 4.8e-144 515.4 315 81.0
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 6.5e-117 425.2 271 78.6
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 5.5e-116 422.2 297 71.4
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 7.2e-116 421.8 443 50.3
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 7.2e-116 421.8 330 66.7
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 1.5e-113 414.1 286 74.8
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 6.3e-112 408.7 283 72.8
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 8.2e-112 408.3 232 85.8
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 6.3e-96 355.5 249 73.5
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 8.2e-96 355.1 398 54.8
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 9.1e-87 325.1 201 82.6
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 3.2e-84 316.6 181 83.4
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 5.2e-82 309.3 175 85.7
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 2.9e-72 276.9 182 76.9
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 2.4e-71 273.9 220 65.9
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 4.7e-67 259.6 405 40.5
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 1.0e-66 258.5 218 63.3
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 2.6e-65 253.8 216 63.4
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 2.2e-64 250.8 216 62.5
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 1.1e-63 248.4 295 46.4
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 4.6e-62 243.0 213 61.5
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 2.3e-58 230.7 214 58.4
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 6.4e-56 222.6 119 89.1
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 8.1e-51 205.7 116 86.2
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 1.2e-43 181.8 188 56.9
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 1.3e-37 161.8 84 91.7
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.7e-37 161.4 88 86.4
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 1.4e-26 125.2 156 46.8
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 1.8e-26 124.8 133 45.9
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 1.9e-23 114.8 205 41.0
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 5.5e-23 113.2 67 83.6
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 2.1e-22 111.3 77 68.8
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 1.5e-20 105.1 135 46.7
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 2.5e-20 104.4 125 48.8
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 2.4e-18 97.8 57 84.2
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 2.9e-16 90.9 57 77.2
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 3.2e-15 87.4 75 58.7
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 4.2e-15 87.0 66 66.7
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 4.6e-14 83.6 44 90.9
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 2.5e-12 77.8 48 81.2
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 2.1e-11 74.7 69 62.3
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 2.8e-11 74.3 46 80.4
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 2.4e-10 71.2 49 69.4
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 2.0e-09 68.2 37 91.9
vmacro09568 Vaccinium macrocarpon HOM05D004109 ORTHO05D003511 4.5e-09 67.0 68 58.8
Zm00001eb213480 Zea mays HOM05D002921 ORTHO05D003258 2.5e-07 61.2 60 60.0
Lsat_1_v5_gn_3_28400 Lactuca sativa HOM05D001423 ORTHO05D048396 3.5e-06 57.4 60 51.7
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 6.1e-06 56.6 31 77.4


User provided reference genes

Program Settings