Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 3.2e-96 355.1 189 100.0
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 1.9e-40 169.9 205 56.6
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 2.7e-34 149.4 178 55.1
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 3.9e-33 145.6 201 50.7
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 3.6e-31 139.0 215 51.2
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 1.1e-30 137.5 207 48.8
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 3.1e-30 136.0 188 50.5
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 4.0e-30 135.6 203 47.8
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 3.4e-29 132.5 216 49.5
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 9.9e-29 131.0 205 46.8
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 2.2e-28 129.8 204 48.0
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.1e-27 127.5 203 47.3
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 1.1e-27 127.5 204 48.5
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 1.9e-27 126.7 204 48.5
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 3.2e-27 125.9 190 48.9
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 5.4e-27 125.2 188 49.5
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 1.6e-26 123.6 215 45.6
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 3.5e-26 122.5 196 48.0
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 6.0e-26 121.7 205 45.4
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 6.0e-26 121.7 206 45.6
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.0e-25 120.9 212 45.3
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 1.3e-25 120.6 208 41.8
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 2.3e-25 119.8 198 42.9
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 2.3e-25 119.8 193 46.1
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 3.0e-25 119.4 213 46.0
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 6.7e-25 118.2 209 46.9
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 6.7e-25 118.2 216 44.4
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 1.1e-24 117.5 204 43.1
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.9e-24 116.7 212 44.3
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.9e-24 116.7 207 41.5
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 4.3e-24 115.5 209 47.4
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 4.3e-24 115.5 205 49.3
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 4.3e-24 115.5 186 48.9
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 5.6e-24 115.2 209 41.6
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 7.4e-24 114.8 215 44.7
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 9.6e-24 114.4 204 47.1
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 1.3e-23 114.0 172 47.1
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 3.7e-23 112.5 195 45.1
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 4.8e-23 112.1 209 46.9
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 6.2e-23 111.7 181 44.8
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 8.1e-23 111.3 209 46.9
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 8.1e-23 111.3 206 42.7
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 8.1e-23 111.3 203 40.9
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.1e-22 110.9 207 44.9
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.4e-22 110.5 210 43.8
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.4e-22 109.8 216 43.1
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.1e-22 109.4 208 48.6
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.1e-22 109.4 208 44.7
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 3.1e-22 109.4 176 47.2
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 4.0e-22 109.0 213 40.4
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 9.0e-22 107.8 208 48.6
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 9.0e-22 107.8 195 44.1
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.5e-21 107.1 211 43.6
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 1.5e-21 107.1 192 44.8
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 3.4e-21 105.9 209 42.6
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 9.9e-21 104.4 192 40.6
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 1.3e-20 104.0 215 40.0
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.7e-20 103.6 204 46.1
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.7e-20 103.6 185 43.8
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 2.9e-20 102.8 191 45.0
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 3.8e-20 102.4 218 43.1
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.9e-20 102.1 163 43.6
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 6.4e-20 101.7 215 40.9
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 6.4e-20 101.7 189 42.9
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 1.4e-19 100.5 211 37.0
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 5.5e-19 98.6 168 45.2
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 7.1e-19 98.2 211 38.9
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 9.3e-19 97.8 201 41.8
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 9.3e-19 97.8 201 41.8
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 1.2e-18 97.4 222 41.9
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 1.2e-18 97.4 200 39.5
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 1.2e-18 97.4 168 45.2
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 2.1e-18 96.7 200 40.5
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 2.7e-18 96.3 191 40.8
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 3.5e-18 95.9 209 38.8
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 4.6e-18 95.5 199 39.7
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 6.0e-18 95.1 205 39.0
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 7.9e-18 94.7 202 37.1
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.8e-17 93.6 168 46.4
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 2.3e-17 93.2 173 42.2
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 2.3e-17 93.2 178 43.3
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 2.3e-17 93.2 154 38.3
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 2.3e-17 93.2 201 42.3
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 3.9e-17 92.4 140 47.1
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 3.9e-17 92.4 187 41.2
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 5.1e-17 92.0 171 43.9
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 5.1e-17 92.0 220 40.0
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 6.7e-17 91.7 203 37.9
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 8.7e-17 91.3 197 40.6
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 8.7e-17 91.3 201 41.8
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 8.7e-17 91.3 179 40.8
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 1.9e-16 90.1 204 38.2
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 2.5e-16 89.7 173 41.0
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 2.5e-16 89.7 195 41.0
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 3.3e-16 89.4 171 43.9
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 7.4e-16 88.2 208 36.5
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 9.6e-16 87.8 174 40.2
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 9.6e-16 87.8 175 39.4
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 9.6e-16 87.8 199 38.7
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.3e-15 87.4 190 40.5
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 2.8e-15 86.3 194 38.7
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 3.7e-15 85.9 143 45.5
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 3.7e-15 85.9 174 38.5
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 8.2e-15 84.7 194 38.7
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 1.1e-14 84.3 171 39.8
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 1.1e-14 84.3 171 39.8
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 1.1e-14 84.3 207 38.2
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 1.4e-14 84.0 171 38.0
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 1.4e-14 84.0 170 40.6
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 1.8e-14 83.6 171 38.6
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 2.4e-14 83.2 167 39.5
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 5.3e-14 82.0 151 42.4
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 5.3e-14 82.0 182 42.3
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 9.0e-14 81.3 220 37.7
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 1.2e-13 80.9 173 39.3
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.2e-13 80.9 211 37.9
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 1.5e-13 80.5 154 43.5
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 1.5e-13 80.5 173 39.3
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 2.0e-13 80.1 169 39.6
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 2.6e-13 79.7 172 38.4
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 2.6e-13 79.7 172 38.4
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 3.4e-13 79.3 193 39.9
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 4.5e-13 79.0 167 37.7
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 7.6e-13 78.2 175 37.1
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 1.3e-12 77.4 171 37.4
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 1.7e-12 77.0 173 38.2
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 2.2e-12 76.6 172 34.9
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 2.9e-12 76.3 216 31.5
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 3.8e-12 75.9 206 35.0
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 6.5e-12 75.1 203 35.0
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 2.5e-11 73.2 173 37.6
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 5.5e-11 72.0 173 37.0
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 7.1e-11 71.6 163 40.5
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 9.3e-11 71.2 169 37.9
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 1.2e-10 70.9 143 44.8
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 2.3e-09 66.6 179 35.8
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 3.0e-09 66.2 114 42.1
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 3.0e-09 66.2 52 65.4
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 3.9e-09 65.9 177 36.7
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 3.9e-09 65.9 177 36.7
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 3.9e-09 65.9 165 39.4
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 5.1e-09 65.5 176 34.7
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 1.5e-08 63.9 75 49.3
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.5e-08 63.9 191 31.9
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 5.7e-08 62.0 179 33.0
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.6e-07 60.5 167 33.5
ATR0762G059 Amborella trichopoda HOM05D009517 ORTHO05D011612 2.8e-07 59.7 155 34.2
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 3.7e-07 59.3 121 45.5
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 6.3e-07 58.5 154 35.7
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 2.4e-06 56.6 84 46.4
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 3.1e-06 56.2 157 33.8
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 3.1e-06 56.2 167 37.7


User provided reference genes

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