Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 4.7e-177 624.4 308 100.0
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 7.8e-148 527.3 308 85.1
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 8.6e-147 523.9 308 83.4
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.1e-146 523.5 308 83.4
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 9.5e-146 520.4 308 82.1
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 9.5e-146 520.4 308 83.8
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 9.5e-146 520.4 308 83.8
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 1.2e-145 520.0 308 83.1
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 2.8e-145 518.8 308 83.8
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.4e-144 516.5 308 83.4
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 1.4e-144 516.5 308 83.1
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 5.2e-144 514.6 308 82.8
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.5e-143 513.1 308 82.1
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 2.0e-143 512.7 308 83.1
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 2.6e-143 512.3 308 82.1
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 3.4e-143 511.9 308 82.8
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 4.4e-143 511.5 308 81.5
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 1.3e-142 510.0 308 82.1
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 1.3e-142 510.0 308 81.5
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.3e-142 510.0 308 81.5
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 1.3e-142 510.0 308 81.2
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.2e-142 509.2 308 81.5
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 3.7e-142 508.4 308 80.8
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 4.9e-142 508.1 308 81.2
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 6.4e-142 507.7 308 81.8
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 6.4e-142 507.7 308 82.1
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 8.3e-142 507.3 308 80.5
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 1.4e-141 506.5 308 80.5
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 1.4e-141 506.5 308 80.5
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.8e-141 506.1 308 81.5
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 2.4e-141 505.8 308 81.5
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 2.4e-141 505.8 308 82.1
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 3.2e-141 505.4 308 80.5
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 3.2e-141 505.4 308 81.2
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 3.2e-141 505.4 308 81.5
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 3.2e-141 505.4 308 80.8
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 4.1e-141 505.0 308 80.2
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 7.0e-141 504.2 308 81.2
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 7.0e-141 504.2 308 80.5
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.2e-140 503.4 305 81.3
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 1.6e-140 503.1 308 81.2
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 1.6e-140 503.1 308 80.5
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 2.0e-140 502.7 308 81.5
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 2.7e-140 502.3 308 80.8
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 3.5e-140 501.9 308 81.5
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 4.6e-140 501.5 308 81.8
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 6.0e-140 501.1 308 79.5
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 7.8e-140 500.7 308 81.2
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.7e-139 499.6 308 81.2
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 1.7e-139 499.6 329 77.5
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 2.3e-139 499.2 308 79.9
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 2.3e-139 499.2 310 80.0
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 2.3e-139 499.2 308 80.8
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 2.3e-139 499.2 308 79.2
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 3.9e-139 498.4 308 80.8
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 3.9e-139 498.4 308 80.5
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 5.0e-139 498.0 308 79.5
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.9e-138 496.1 333 75.4
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 1.9e-138 496.1 308 80.5
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 2.5e-138 495.7 308 80.5
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 4.3e-138 495.0 308 78.6
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 7.3e-138 494.2 308 79.5
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 1.2e-137 493.4 307 79.5
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 1.6e-137 493.0 308 79.5
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 4.7e-137 491.5 308 78.6
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 4.7e-137 491.5 308 78.2
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 1.1e-136 490.3 308 78.6
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.4e-136 490.0 308 78.2
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 2.3e-136 489.2 308 77.9
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 4.0e-136 488.4 308 78.2
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 6.8e-136 487.6 304 79.9
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 8.9e-136 487.3 306 78.4
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 8.9e-136 487.3 308 77.6
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 1.5e-135 486.5 306 78.8
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 2.0e-135 486.1 308 78.2
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 2.6e-135 485.7 303 78.5
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 7.5e-135 484.2 308 77.6
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 9.8e-135 483.8 308 77.6
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 1.3e-134 483.4 308 76.9
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 1.3e-134 483.4 308 76.6
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 1.3e-134 483.4 375 68.0
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 1.7e-134 483.0 308 77.6
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 1.7e-134 483.0 308 76.9
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 2.9e-134 482.3 308 77.3
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 4.9e-134 481.5 308 77.6
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 6.4e-134 481.1 308 77.3
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 1.1e-133 480.3 306 77.8
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 2.4e-133 479.2 307 77.2
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 2.4e-133 479.2 307 77.2
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 2.4e-133 479.2 307 77.2
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 5.4e-133 478.0 308 76.9
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 7.0e-133 477.6 308 76.0
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 1.6e-132 476.5 308 76.6
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.6e-132 476.5 303 78.5
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 2.0e-132 476.1 307 76.9
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 2.0e-132 476.1 308 76.0
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 2.7e-132 475.7 308 76.0
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 7.8e-132 474.2 304 78.3
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 3.0e-131 472.2 305 76.4
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 3.3e-130 468.8 306 74.5
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 9.5e-130 467.2 308 73.7
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 8.9e-128 460.7 308 72.7
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 4.4e-127 458.4 308 73.4
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 7.3e-122 441.0 303 72.3
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 7.3e-122 441.0 306 71.2
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 1.1e-120 437.2 307 70.7
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 3.1e-120 435.6 391 60.1
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 1.5e-119 433.3 307 69.1
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 1.5e-119 433.3 307 69.1
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 1.5e-119 433.3 307 70.0
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 2.9e-118 429.1 307 69.4
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 1.0e-115 420.6 306 66.3
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 9.6e-114 414.1 306 65.4
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 1.8e-112 409.8 308 64.9
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 7.6e-111 404.4 308 68.8
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 8.7e-107 391.0 309 63.4
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 3.1e-104 382.5 306 61.8
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.5e-103 380.2 264 75.0
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 3.5e-100 369.0 311 60.5
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 6.0e-100 368.2 228 80.3
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 1.3e-99 367.1 238 79.0
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 3.9e-91 339.0 228 76.8
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.1e-84 316.6 231 71.0
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 6.0e-84 315.1 213 72.3
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 1.7e-70 270.4 176 78.4
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 1.8e-64 250.4 184 70.7
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 1.5e-63 247.3 150 80.7
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 2.6e-63 246.5 144 84.7
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 8.8e-59 231.5 154 73.4
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 1.7e-54 217.2 154 68.2
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 6.1e-52 208.8 307 46.3
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 4.8e-41 172.6 125 66.4
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 2.0e-39 167.2 130 59.2
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 8.6e-38 161.8 80 92.5
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 5.5e-37 159.1 83 85.5
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 7.2e-37 158.7 80 88.8
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.4e-35 154.5 79 88.6
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 3.0e-35 153.3 85 83.5
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 9.8e-34 148.3 301 33.6
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 2.8e-33 146.7 307 35.5
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 4.1e-32 142.9 208 45.7
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 2.1e-28 130.6 95 71.6
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 4.9e-25 119.4 76 73.7
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 5.4e-24 115.9 64 84.4
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 2.7e-23 113.6 60 86.7
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 3.0e-22 110.2 58 86.2
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 1.2e-18 98.2 299 29.4
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 2.8e-12 77.0 238 27.7
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 4.0e-11 73.2 75 60.0


User provided reference genes

Program Settings