Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold114G31961 Striga asiatica HOM05D002737 ORTHO05D005828 7.0e-165 583.9 309 100.0
SGA_v2.0_scaffold7G03980 Striga asiatica HOM05D002737 ORTHO05D005828 2.8e-121 439.1 314 82.2
MSTRG.21020 Avicennia marina HOM05D002737 ORTHO05D005828 3.5e-108 395.6 316 72.2
Migut.D02412 Erythranthe guttata HOM05D002737 ORTHO05D005828 1.1e-96 357.5 316 65.8
Dinv17085 Davidia involucrata HOM05D002737 ORTHO05D005828 1.2e-92 344.0 309 64.7
Actinidia07271 Actinidia chinensis HOM05D002737 ORTHO05D005828 1.8e-88 330.1 307 62.5
Oeu049293.2 Olea europaea HOM05D002737 ORTHO05D005828 4.1e-88 328.9 355 58.3
CSS0011545 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.2e-87 327.4 309 61.5
Rhsim13G0195300 Rhododendron simsii HOM05D002737 ORTHO05D005828 1.1e-85 320.9 314 59.9
CSS0011939 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.4e-85 320.5 309 60.5
vmacro03959 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 2.5e-85 319.7 311 62.4
vmacro06935 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 7.2e-85 318.2 311 62.4
Manes.01G182101 Manihot esculenta HOM05D002737 ORTHO05D005828 7.9e-84 314.7 314 59.9
unitig_88.g27805 Utricularia gibba HOM05D002737 ORTHO05D002121 1.5e-82 310.5 310 60.0
ClCG01G011660 Citrullus lanatus HOM05D002737 ORTHO05D005828 2.0e-82 310.1 327 57.5
Duzib150G0779 Durio zibethinus HOM05D002737 ORTHO05D005828 4.3e-82 308.9 320 60.0
MELO3C003924.2 Cucumis melo HOM05D002737 ORTHO05D005828 3.7e-81 305.8 316 58.5
ECA248G3131 Erigeron canadensis HOM05D002737 ORTHO05D005828 3.7e-81 305.8 316 58.9
Sed0023461 Sechium edule HOM05D002737 ORTHO05D005828 4.8e-81 305.4 326 57.4
CsaV3_2G009130 Cucumis sativus L. HOM05D002737 ORTHO05D005828 6.3e-81 305.1 323 57.3
TWI79G0303 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 1.2e-79 300.8 313 57.2
CAN.G745.41 Capsicum annuum HOM05D002737 ORTHO05D005828 2.0e-79 300.1 312 59.9
Duzib168G0210 Durio zibethinus HOM05D002737 ORTHO05D005828 4.5e-79 298.9 318 59.4
Lsat_1_v5_gn_5_176321 Lactuca sativa HOM05D002737 ORTHO05D005828 4.5e-79 298.9 308 57.5
TWI77G0520 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 5.9e-79 298.5 310 57.1
Cc01_g08470 Coffea canephora HOM05D002737 ORTHO05D005828 1.0e-78 297.7 313 57.2
PGSC0003DMG400019621 Solanum tuberosum HOM05D002737 ORTHO05D005828 1.7e-78 297.0 315 59.7
Lj7A589T65 Lonicera japonica HOM05D002737 ORTHO05D005828 6.5e-78 295.0 309 58.6
Sc12g0004790 Simmondsia chinensis HOM05D002737 ORTHO05D005828 8.5e-78 294.7 307 58.6
FAN23G1354 Fragaria x ananassa HOM05D002737 ORTHO05D005828 2.5e-77 293.1 319 57.7
GSVIVG01036054001 Vitis vinifera HOM05D002737 ORTHO05D005828 1.6e-76 290.4 193 78.2
FAN19G0045 Fragaria x ananassa HOM05D002737 ORTHO05D005828 2.1e-76 290.0 319 57.7
FvH4_1g21730 Fragaria vesca HOM05D002737 ORTHO05D005828 2.7e-76 289.7 319 57.4
Sopen11g027560 Solanum pennellii HOM05D002737 ORTHO05D005828 2.7e-76 289.7 318 57.2
Solyc11g068870.2 Solanum lycopersicum HOM05D002737 ORTHO05D005828 3.6e-76 289.3 318 57.2
FAN26G0444 Fragaria x ananassa HOM05D002737 ORTHO05D005828 6.1e-76 288.5 319 57.1
Hma1.2p1_0793F.1_g218640 Hydrangea macrophylla HOM05D002737 ORTHO05D005828 6.1e-76 288.5 309 57.9
Nitab4.5_0001135g0150 Nicotiana tabacum HOM05D002737 ORTHO05D005828 3.0e-75 286.2 311 58.5
Prupe.6G178500 Prunus persica HOM05D002737 ORTHO05D005828 5.1e-75 285.4 331 53.2
CDE06G1256 Ceratophyllum demersum HOM05D002737 ORTHO05D005828 1.1e-74 284.3 308 56.8
EL10Ac7g17115 Beta vulgaris HOM05D002737 ORTHO05D005828 2.6e-74 283.1 321 55.5
CiPaw.14G096400 Carya illinoinensis HOM05D002737 ORTHO05D005828 9.7e-74 281.2 311 54.7
Thecc.09G275600 Theobroma cacao HOM05D002737 ORTHO05D005828 3.7e-73 279.3 319 56.1
Nitab4.5_0000893g0040 Nicotiana tabacum HOM05D002737 ORTHO05D005828 6.3e-73 278.5 314 55.4
THA.LOC104826443 Tarenaya hassleriana HOM05D002737 ORTHO05D005828 1.8e-72 276.9 317 55.5
Aa31LG5G8680 Aethionema arabicum HOM05D002737 ORTHO05D005828 3.1e-72 276.2 309 52.8
RcHm_v2.0_Chr2g0115601 Rosa chinensis HOM05D002737 ORTHO05D005828 5.3e-72 275.4 324 53.4
Gohir.D07G115800 Gossypium hirsutum HOM05D002737 ORTHO05D005828 1.2e-71 274.2 313 55.9
Haze_00725 Corylus avellana HOM05D002737 ORTHO05D005828 3.5e-71 272.7 319 54.2
Nn6g34744 Nelumbo nucifera HOM05D002737 ORTHO05D005828 7.7e-71 271.6 314 54.8
Haze_00729 Corylus avellana HOM05D002737 ORTHO05D005828 1.7e-70 270.4 316 52.8
Ah.10g032410 Amaranthus hybridus HOM05D002737 ORTHO05D005828 2.9e-70 269.6 358 49.7
AT2G27285 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 5.0e-70 268.9 325 52.3
TAR268G0004 Trochodendron aralioides HOM05D002737 ORTHO05D005828 1.9e-69 266.9 309 54.7
Lalb_Chr02g0143691 Lupinus albus HOM05D002737 ORTHO05D005828 2.5e-69 266.5 324 50.9
Gorai.001G124100 Gossypium raimondii HOM05D002737 ORTHO05D005828 3.2e-69 266.2 314 55.4
CDE08G0429 Ceratophyllum demersum HOM05D002737 ORTHO05D003752 4.2e-69 265.8 226 67.3
Potri.009G162500 Populus trichocarpa HOM05D002737 ORTHO05D005828 5.5e-69 265.4 320 52.2
Gohir.A07G112300 Gossypium hirsutum HOM05D002737 ORTHO05D005828 9.4e-69 264.6 314 53.5
Lj5g0022679 Lotus japonicus HOM05D002737 ORTHO05D005828 1.6e-68 263.8 322 51.2
DCAR_003399 Daucus carota HOM05D002737 ORTHO05D005828 2.7e-68 263.1 308 51.0
Hund18792 Selenicereus undatus HOM05D002737 ORTHO05D005828 2.7e-68 263.1 334 52.1
arahy.Tifrunner.gnm1.ann1.AGV1MP Arachis hypogaea HOM05D002737 ORTHO05D005828 3.6e-68 262.7 321 50.5
AL4G21200 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 1.8e-67 260.4 321 51.7
Glyma.20G101200 Glycine max HOM05D002737 ORTHO05D005828 1.8e-67 260.4 316 50.3
PSO063G0569 Papaver somniferum HOM05D002737 ORTHO05D005828 1.8e-67 260.4 314 51.3
CANSAT64G0180 Cannabis sativa HOM05D002737 ORTHO05D005828 3.0e-67 259.6 311 53.4
Glyma.10G288000 Glycine max HOM05D002737 ORTHO05D005828 4.0e-67 259.2 321 50.5
arahy.Tifrunner.gnm1.ann1.4SNC56 Arachis hypogaea HOM05D002737 ORTHO05D005828 5.2e-67 258.8 321 49.5
Sabra15G0046000 Salix brachista HOM05D002737 ORTHO05D005828 2.0e-66 256.9 311 52.1
Sabra15G0048200 Salix brachista HOM05D002737 ORTHO05D005828 2.0e-66 256.9 311 52.1
PGR119G1771 Punica granatum HOM05D002737 ORTHO05D005828 7.5e-66 255.0 322 50.9
Aqoxy4G02622 Aquilegia oxysepala HOM05D002737 ORTHO05D005828 9.7e-66 254.6 315 50.2
Haze_23327 Corylus avellana HOM05D002737 ORTHO05D005828 9.7e-66 254.6 315 52.1
Medtr5g095010 Medicago truncatula HOM05D002737 ORTHO05D005828 9.7e-66 254.6 319 51.7
Carub.0004s0789 Capsella rubella HOM05D002737 ORTHO05D005828 1.3e-65 254.2 318 50.9
VMungo0720G0453 Vigna mungo HOM05D002737 ORTHO05D005828 2.8e-65 253.1 306 51.6
Ca_06383_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 3.7e-65 252.7 322 48.4
Ca_29964_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 3.7e-65 252.7 322 48.4
Sp4g10090 Schrenkiella parvula HOM05D002737 ORTHO05D005828 3.7e-65 252.7 309 48.5
Peaxi162Scf01010g00216 Petunia axillaris HOM05D002737 ORTHO05D005828 4.8e-65 252.3 258 57.4
Psat2g008640 Pisum sativum HOM05D002737 ORTHO05D005828 4.8e-65 252.3 318 49.7
ATR0807G231 Amborella trichopoda HOM05D002737 ORTHO05D005828 1.1e-64 251.1 314 51.3
Sabra15G0059900 Salix brachista HOM05D002737 ORTHO05D005828 1.1e-64 251.1 318 50.9
MD15G1329700 Malus domestica HOM05D002737 ORTHO05D005828 2.4e-64 250.0 334 48.8
Peaxi162Scf00010g03312 Petunia axillaris HOM05D002737 ORTHO05D005828 2.4e-64 250.0 257 58.4
Thhalv10002052m.g Eutrema salsugineum HOM05D002737 ORTHO05D005828 2.7e-63 246.5 312 51.6
Peaxi162Scf01324g00241 Petunia axillaris HOM05D002737 ORTHO05D005828 2.7e-63 246.5 322 51.2
Lj5g0011855 Lotus japonicus HOM05D002737 ORTHO05D005828 3.5e-63 246.1 323 49.2
BcaB06g28137 Brassica carinata HOM05D002737 ORTHO05D005828 1.3e-62 244.2 311 50.8
CARHR119810 Cardamine hirsuta HOM05D002737 ORTHO05D005828 2.9e-62 243.0 322 48.8
COL.COLO4_22657 Corchorus olitorius HOM05D002737 ORTHO05D005828 5.0e-62 242.3 322 52.2
QL07p000712 Quercus lobata HOM05D002737 ORTHO05D005828 1.1e-61 241.1 287 52.6
Carub.0004s0788 Capsella rubella HOM05D002737 ORTHO05D005828 5.5e-61 238.8 318 49.4
MBI01_g04520_MAGBIO Magnolia biondii HOM05D002737 ORTHO05D005828 5.5e-61 238.8 310 50.0
BcaC02g08257 Brassica carinata HOM05D002737 ORTHO05D005828 9.4e-61 238.0 190 66.3
C04p56640 Brassica napus HOM05D002737 ORTHO05D005828 9.4e-61 238.0 190 66.3
AL4G21190 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 4.7e-60 235.7 195 64.1
Eucgr.J00541 Eucalyptus grandis HOM05D002737 ORTHO05D005828 1.8e-59 233.8 325 48.6
Peaxi162Scf00010g03410 Petunia axillaris HOM05D002737 ORTHO05D005828 3.4e-58 229.6 258 52.7
TPR.G14160 Trifolium pratense HOM05D002737 ORTHO05D005828 6.3e-57 225.3 332 45.5
Ciclev10028821m.g Citrus clementina HOM05D002737 ORTHO05D005828 1.2e-55 221.1 336 45.5
Phvul.007G013400 Phaseolus vulgaris HOM05D002737 ORTHO05D005828 7.7e-55 218.4 324 45.7
Migut.D02400 Erythranthe guttata HOM05D002737 ORTHO05D005828 1.7e-54 217.2 315 48.3
A04p20820 Brassica napus HOM05D002737 ORTHO05D005828 2.9e-54 216.5 308 47.1
BolC4t27191H Brassica oleracea HOM05D002737 ORTHO05D005828 2.9e-54 216.5 310 48.1
BraA04t17655Z Brassica rapa HOM05D002737 ORTHO05D005828 2.9e-54 216.5 308 47.1
AagrBONN_evm.TU.Sc2ySwM_368.3225 Anthoceros agrestis HOM05D002737 ORTHO05D005828 8.5e-54 214.9 196 59.7
AT2G27280 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 5.5e-53 212.2 311 45.7
Pp3c10_11700 Physcomitrium patens HOM05D002737 ORTHO05D005828 8.0e-52 208.4 338 43.5
Atru.chr3.3139 Acer truncatum HOM05D002737 ORTHO05D005828 6.8e-51 205.3 210 58.1
SEGI_17121 Sequoiadendron giganteum HOM05D002737 ORTHO05D005828 2.2e-49 200.3 169 65.7
Sabra15G0053400 Salix brachista HOM05D002737 ORTHO05D005828 2.8e-49 199.9 311 46.0
Sabra09G0126900 Salix brachista HOM05D002737 ORTHO05D005828 8.3e-49 198.4 265 48.3
Sabra15G0053700 Salix brachista HOM05D002737 ORTHO05D005828 1.8e-48 197.2 209 56.5
HPP92_021234 Vanilla planifolia HOM05D002737 ORTHO05D005828 9.2e-48 194.9 320 42.5
AL1G53070 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 1.3e-46 191.0 208 52.9
Mapoly0024s0122 Marchantia polymorpha HOM05D002737 ORTHO05D005828 4.3e-45 186.0 337 40.4
AT1G55928 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 9.5e-45 184.9 226 50.9
Zm00001eb422940 Zea mays HOM05D002737 ORTHO05D005828 5.2e-43 179.1 254 47.2
QL07p000775 Quercus lobata HOM05D002737 ORTHO05D005828 3.2e-40 169.9 260 44.6
CiPaw.13G131400 Carya illinoinensis HOM05D002737 ORTHO05D005828 5.4e-40 169.1 240 48.3
HanXRQChr03g0065531 Helianthus annuus HOM05D002737 ORTHO05D005828 4.6e-39 166.0 233 48.5
CBR_g6328 Chara braunii HOM05D002737 ORTHO05D005828 2.3e-38 163.7 260 42.7
Os04g0440000 Oryza sativa ssp. japonica HOM05D002737 ORTHO05D005828 3.9e-38 162.9 262 43.1
CBR_g45752 Chara braunii HOM05D002737 ORTHO05D005828 1.9e-37 160.6 307 39.4
Migut.D02413 Erythranthe guttata HOM05D002737 ORTHO05D005828 1.9e-37 160.6 220 50.5
CARHR119800 Cardamine hirsuta HOM05D002737 ORTHO05D005828 3.6e-36 156.4 182 52.2
Actinidia24241 Actinidia chinensis HOM05D002737 ORTHO05D005828 6.8e-35 152.1 191 50.8
Actinidia24240 Actinidia chinensis HOM05D002737 ORTHO05D005828 1.5e-34 151.0 100 76.0
AUR62037790 Chenopodium quinoa HOM05D002737 ORTHO05D005828 4.4e-34 149.4 223 48.4
AUR62018224 Chenopodium quinoa HOM05D002737 ORTHO05D005828 2.9e-33 146.7 223 49.3
Potri.004G201300 Populus trichocarpa HOM05D002737 ORTHO05D005828 3.5e-31 139.8 309 38.2
Cre17.g734000 Chlamydomonas reinhardtii HOM05D002737 ORTHO05D005828 4.6e-31 139.4 202 40.6
QL07p000693 Quercus lobata HOM05D002737 ORTHO05D009499 4.6e-31 139.4 184 47.3
FAN28G1974 Fragaria x ananassa HOM05D002737 ORTHO05D005828 3.9e-30 136.3 106 67.0
Lalb_Chr06g0164021 Lupinus albus HOM05D002737 ORTHO05D005828 6.6e-30 135.6 107 66.4
Gohir.D05G081600 Gossypium hirsutum HOM05D002737 ORTHO05D005828 1.1e-27 128.3 269 39.8
MCO06G117 Micromonas commoda HOM05D002737 ORTHO05D005828 3.4e-26 123.2 344 32.8
MD01G1023000 Malus domestica HOM05D002737 ORTHO05D005828 8.3e-25 118.6 102 63.7
Oeu025863.1 Olea europaea HOM05D002737 ORTHO05D005828 1.9e-24 117.5 149 52.3
CSS0037550 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 6.0e-23 112.5 97 63.9
arahy.Tifrunner.gnm1.ann1.0K86JE Arachis hypogaea HOM05D002737 ORTHO05D005828 6.8e-19 99.0 309 33.7
SHI06201 Sapria himalayana HOM05D002737 ORTHO05D005828 1.2e-18 98.2 82 63.4
AagrBONN_evm.TU.Sc2ySwM_368.3239 Anthoceros agrestis HOM05D002737 ORTHO05D005828 9.9e-18 95.1 71 71.8
arahy.Tifrunner.gnm1.ann1.G9FM3T Arachis hypogaea HOM05D002737 ORTHO05D005828 6.4e-17 92.4 94 53.2
arahy.Tifrunner.gnm1.ann1.K04YXN Arachis hypogaea HOM05D002737 ORTHO05D023756 9.6e-13 78.6 140 42.1
QL07p000753 Quercus lobata HOM05D002737 ORTHO05D005828 5.2e-11 72.8 94 51.1
AagrBONN_evm.TU.Sc2ySwM_368.3190 Anthoceros agrestis HOM05D000001 ORTHO05D072262 2.6e-10 70.5 53 67.9
Rhsim13G0195400 Rhododendron simsii HOM05D002737 ORTHO05D005828 6.4e-09 65.9 140 37.1
CARHR119790 Cardamine hirsuta HOM05D002737 ORTHO05D005828 4.2e-08 63.2 211 31.3
Cpa.g.sc23.121 Carica papaya HOM05D002737 ORTHO05D005828 6.0e-07 59.3 147 33.3
SalBow6G0979 Salvia bowleyana HOM05D002737 ORTHO05D005828 3.0e-06 57.0 69 43.5


User provided reference genes

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