Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 5.6e-80 300.8 145 100.0
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 1.1e-62 243.4 145 77.2
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 2.3e-62 242.3 145 77.2
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 8.3e-60 233.8 145 73.8
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 8.3e-60 233.8 145 73.8
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 3.1e-54 215.3 145 66.9
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 4.0e-54 214.9 142 68.3
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 1.2e-53 213.4 135 71.9
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 6.6e-49 197.6 138 66.7
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 8.7e-49 197.2 145 65.5
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 3.3e-48 195.3 142 64.1
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 5.6e-48 194.5 142 62.7
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 2.1e-47 192.6 145 63.4
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 2.8e-47 192.2 141 63.1
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 6.2e-47 191.0 144 58.3
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 6.2e-47 191.0 140 63.6
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 6.2e-47 191.0 141 63.8
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 8.1e-47 190.7 145 63.4
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.1e-46 190.3 145 63.4
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 1.1e-46 190.3 138 63.0
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 1.4e-46 189.9 137 62.0
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 1.8e-46 189.5 141 62.4
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 2.4e-46 189.1 146 63.0
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 2.4e-46 189.1 141 62.4
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 3.1e-46 188.7 141 62.4
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 3.1e-46 188.7 141 62.4
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 3.1e-46 188.7 143 62.9
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 4.0e-46 188.3 140 62.9
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 4.0e-46 188.3 141 62.4
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 5.2e-46 188.0 141 61.7
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 1.5e-45 186.4 142 58.5
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 2.0e-45 186.0 143 62.9
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 2.0e-45 186.0 143 60.1
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 2.6e-45 185.7 144 62.5
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 2.6e-45 185.7 143 62.9
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 5.8e-45 184.5 140 61.4
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 5.8e-45 184.5 138 60.1
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 7.6e-45 184.1 141 61.7
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 9.9e-45 183.7 143 58.7
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 3.8e-44 181.8 137 60.6
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 3.8e-44 181.8 142 59.9
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 4.9e-44 181.4 142 59.2
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 8.4e-44 180.6 139 60.4
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.4e-43 179.9 145 57.9
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 1.4e-43 179.9 142 55.6
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 4.2e-43 178.3 143 59.4
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 1.2e-42 176.8 143 60.8
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 1.2e-42 176.8 144 58.3
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 1.6e-42 176.4 137 57.7
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 2.1e-42 176.0 139 59.0
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 3.5e-42 175.3 138 58.0
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 3.5e-42 175.3 131 61.8
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 1.0e-41 173.7 139 57.6
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 1.0e-41 173.7 139 57.6
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 1.0e-41 173.7 142 57.7
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 1.3e-41 173.3 142 56.3
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 1.7e-41 172.9 130 62.3
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 3.0e-41 172.2 141 58.2
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 3.0e-41 172.2 141 58.2
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 1.1e-40 170.2 127 61.4
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 1.5e-40 169.9 130 60.0
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.5e-40 169.9 141 57.4
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 1.5e-40 169.9 135 57.8
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.5e-40 169.9 146 53.4
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 2.5e-40 169.1 130 60.8
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 9.6e-40 167.2 143 55.2
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 1.3e-39 166.8 143 53.8
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.3e-39 166.8 145 55.9
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 1.3e-39 166.8 140 57.1
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 2.1e-39 166.0 132 59.1
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 2.8e-39 165.6 132 59.1
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 2.8e-39 165.6 137 56.2
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 3.6e-39 165.2 128 62.5
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 1.1e-38 163.7 156 50.6
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 1.4e-38 163.3 133 58.6
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 2.4e-38 162.5 139 56.1
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 3.1e-38 162.2 139 56.8
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 3.1e-38 162.2 139 56.8
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 3.1e-38 162.2 139 56.8
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 4.0e-38 161.8 133 57.9
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 5.3e-38 161.4 142 54.9
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 9.0e-38 160.6 138 56.5
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 1.2e-37 160.2 131 56.5
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 1.5e-37 159.8 142 54.2
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 2.0e-37 159.5 126 57.1
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 2.6e-37 159.1 127 59.1
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 3.4e-37 158.7 139 56.8
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 3.4e-37 158.7 139 56.8
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 3.4e-37 158.7 139 56.8
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 4.5e-37 158.3 132 53.8
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 7.6e-37 157.5 139 54.7
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 9.9e-37 157.1 131 54.2
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 2.9e-36 155.6 140 52.9
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 6.4e-36 154.5 131 55.0
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 6.4e-36 154.5 138 47.1
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 8.4e-36 154.1 132 52.3
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 8.4e-36 154.1 126 57.1
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 1.1e-35 153.7 129 55.0
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.4e-35 153.3 138 47.8
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 1.9e-35 152.9 214 41.6
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 7.1e-35 151.0 122 56.6
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 7.1e-35 151.0 128 56.2
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 9.3e-35 150.6 128 56.2
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.2e-34 150.2 131 54.2
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.2e-34 150.2 128 56.2
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 3.5e-34 148.7 128 56.2
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.3e-33 146.7 122 56.6
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 1.8e-33 146.4 151 47.7
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 1.8e-33 146.4 141 49.6
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 5.1e-33 144.8 119 58.8
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 1.1e-32 143.7 131 53.4
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 2.5e-32 142.5 125 55.2
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 3.3e-32 142.1 132 53.0
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 4.8e-31 138.3 138 46.4
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 1.8e-30 136.3 113 56.6
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 4.5e-29 131.7 130 44.6
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 5.8e-29 131.3 130 45.4
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 2.9e-28 129.0 116 50.9
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 6.4e-28 127.9 133 42.9
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 1.1e-27 127.1 125 46.4
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 1.1e-27 127.1 116 50.9
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 5.5e-27 124.8 116 50.0
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 1.2e-26 123.6 85 69.4
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 1.0e-25 120.6 143 40.6
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 6.7e-25 117.9 98 57.1
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 1.1e-24 117.1 107 50.5
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 2.1e-23 112.8 96 53.1
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 8.2e-23 110.9 84 56.0
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 1.8e-22 109.8 212 31.1
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 1.0e-20 104.0 81 60.5
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 1.3e-20 103.6 144 39.6
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 4.9e-20 101.7 76 60.5
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 5.1e-17 91.7 81 55.6
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 1.1e-16 90.5 133 39.1
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 1.8e-14 83.2 62 61.3
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.2e-13 80.5 136 33.8
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 2.6e-13 79.3 62 58.1
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 2.9e-12 75.9 131 31.3
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 3.2e-11 72.4 60 56.7
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 3.2e-11 72.4 60 56.7
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 3.6e-10 68.9 108 36.1
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 6.1e-10 68.2 79 48.1


User provided reference genes

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