Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold114G31931 Striga asiatica HOM05D006941 ORTHO05D008361 1.9e-83 312.4 152 100.0
SGA_v2.0_scaffold57G20266 Striga asiatica HOM05D006941 ORTHO05D008361 6.1e-13 78.2 41 87.8
Sc19g0004830 Simmondsia chinensis HOM05D006941 ORTHO05D008361 2.3e-12 76.3 139 34.5
MSTRG.24772 Avicennia marina HOM05D006941 ORTHO05D008361 4.0e-12 75.5 144 36.1
Gohir.A02G045400 Gossypium hirsutum HOM05D006941 ORTHO05D008361 2.0e-11 73.2 52 65.4
Gohir.D02G051400 Gossypium hirsutum HOM05D006941 ORTHO05D008361 2.0e-11 73.2 52 65.4
Gorai.005G056700 Gossypium raimondii HOM05D006941 ORTHO05D008361 2.0e-11 73.2 52 65.4
Oeu010965.1 Olea europaea HOM05D006941 ORTHO05D008361 3.4e-11 72.4 52 63.5
vmacro15274 Vaccinium macrocarpon HOM05D006941 ORTHO05D008361 7.5e-11 71.2 41 75.6
Oeu029280.1 Olea europaea HOM05D006941 ORTHO05D008361 1.3e-10 70.5 52 61.5
Os11g0107450 Oryza sativa ssp. japonica HOM05D006941 ORTHO05D008361 1.3e-10 70.5 49 67.3
Ca_09608_v3 Cicer arietinum L. HOM05D006941 ORTHO05D008361 1.7e-10 70.1 52 65.4
Migut.G00223 Erythranthe guttata HOM05D006941 ORTHO05D008361 1.7e-10 70.1 52 61.5
FvH4_4g16990 Fragaria vesca HOM05D006941 ORTHO05D008361 2.2e-10 69.7 52 61.5
FAN07G2315 Fragaria x ananassa HOM05D006941 ORTHO05D008361 2.2e-10 69.7 52 61.5
FAN12G1403 Fragaria x ananassa HOM05D006941 ORTHO05D008361 2.2e-10 69.7 52 61.5
FAN12G3786 Fragaria x ananassa HOM05D006941 ORTHO05D008361 2.2e-10 69.7 52 61.5
Os12g0106550 Oryza sativa ssp. japonica HOM05D006941 ORTHO05D008361 2.2e-10 69.7 40 80.0
CANSAT78G0092 Cannabis sativa HOM05D006941 ORTHO05D008361 2.9e-10 69.3 52 61.5
Psat6g067840 Pisum sativum HOM05D006941 ORTHO05D008361 2.9e-10 69.3 52 65.4
HanXRQChr05g0154771 Helianthus annuus HOM05D006941 ORTHO05D008361 3.7e-10 68.9 52 63.5
TWI53G0190 Tripterygium wilfordii HOM05D006941 ORTHO05D008361 3.7e-10 68.9 50 62.0
Haze_01039 Corylus avellana HOM05D006941 ORTHO05D008361 4.9e-10 68.6 41 75.6
Sabra05G0058700 Salix brachista HOM05D006941 ORTHO05D008361 6.4e-10 68.2 41 73.2
Thecc.04G275300 Theobroma cacao HOM05D006941 ORTHO05D008361 6.4e-10 68.2 52 59.6
VMungo0720G2266 Vigna mungo HOM05D006941 ORTHO05D008361 6.4e-10 68.2 139 33.8
Zm00001eb163280 Zea mays HOM05D006941 ORTHO05D008361 6.4e-10 68.2 41 75.6
Atru.chr2.2418 Acer truncatum HOM05D006941 ORTHO05D008361 8.3e-10 67.8 145 32.4
CiPaw.02G087700 Carya illinoinensis HOM05D006941 ORTHO05D008361 8.3e-10 67.8 52 57.7
Phvul.007G158300 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 8.3e-10 67.8 52 63.5
Lj5g0014316 Lotus japonicus HOM05D006941 ORTHO05D008361 1.1e-09 67.4 52 65.4
PGR004G2827 Punica granatum HOM05D006941 ORTHO05D008361 1.1e-09 67.4 52 59.6
vmacro16859 Vaccinium macrocarpon HOM05D000537 ORTHO05D000415 1.1e-09 67.4 38 76.3
ECA233G1626 Erigeron canadensis HOM05D006941 ORTHO05D008361 1.4e-09 67.0 52 61.5
Manes.03G190000 Manihot esculenta HOM05D006941 ORTHO05D008361 1.4e-09 67.0 65 53.8
FAN17G2868 Fragaria x ananassa HOM05D006941 ORTHO05D008361 1.8e-09 66.6 52 59.6
HanXRQChr15g0466771 Helianthus annuus HOM05D006941 ORTHO05D008361 1.8e-09 66.6 41 75.6
Phvul.010G109000 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 1.8e-09 66.6 52 59.6
Phvul.L002281 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 1.8e-09 66.6 52 59.6
Eucgr.H03675 Eucalyptus grandis HOM05D006941 ORTHO05D008361 2.4e-09 66.2 45 66.7
Prupe.1G143700 Prunus persica HOM05D006941 ORTHO05D008361 2.4e-09 66.2 73 49.3
RcHm_v2.0_Chr4g0420661 Rosa chinensis HOM05D006941 ORTHO05D008361 2.4e-09 66.2 52 59.6
Zm00001eb094170 Zea mays HOM05D006941 ORTHO05D008361 2.4e-09 66.2 41 73.2
COL.COLO4_13955 Corchorus olitorius HOM05D006941 ORTHO05D008361 3.2e-09 65.9 41 73.2
Duzib151G0434 Durio zibethinus HOM05D006941 ORTHO05D008361 3.2e-09 65.9 50 62.0
Rhsim02G0014500 Rhododendron simsii HOM05D006941 ORTHO05D008361 3.2e-09 65.9 52 59.6
TWI09G0325 Tripterygium wilfordii HOM05D006941 ORTHO05D008361 3.2e-09 65.9 50 60.0
FAN22G2172 Fragaria x ananassa HOM05D006941 ORTHO05D008361 4.1e-09 65.5 52 59.6
Glyma.10G044600 Glycine max HOM05D006941 ORTHO05D008361 4.1e-09 65.5 52 59.6
Glyma.13G132200 Glycine max HOM05D006941 ORTHO05D008361 4.1e-09 65.5 52 59.6
Solyc01g067820.3 Solanum lycopersicum HOM05D006941 ORTHO05D008361 4.1e-09 65.5 51 62.7
PGSC0003DMG400022846 Solanum tuberosum HOM05D006941 ORTHO05D008361 4.1e-09 65.5 51 62.7
arahy.Tifrunner.gnm1.ann1.DDI179 Arachis hypogaea HOM05D006941 ORTHO05D008361 5.4e-09 65.1 55 65.5
CARHR172790 Cardamine hirsuta HOM05D006941 ORTHO05D008361 5.4e-09 65.1 43 65.1
Eucgr.H03682 Eucalyptus grandis HOM05D006941 ORTHO05D008361 5.4e-09 65.1 52 59.6
Eucgr.H03704 Eucalyptus grandis HOM05D006941 ORTHO05D008361 5.4e-09 65.1 52 59.6
Lsat_1_v5_gn_2_28060 Lactuca sativa HOM05D006941 ORTHO05D008361 5.4e-09 65.1 42 71.4
Sopen01g029770 Solanum pennellii HOM05D006941 ORTHO05D008361 5.4e-09 65.1 51 62.7
EL10As5g23584 Beta vulgaris HOM05D006941 ORTHO05D008361 7.0e-09 64.7 50 60.0
Lalb_Chr14g0364951 Lupinus albus HOM05D006941 ORTHO05D008361 7.0e-09 64.7 52 61.5
Manes.14G117300 Manihot esculenta HOM05D006941 ORTHO05D008361 7.0e-09 64.7 65 53.8
Potri.005G071700 Populus trichocarpa HOM05D006941 ORTHO05D008361 7.0e-09 64.7 52 55.8
Hund22020 Selenicereus undatus HOM05D006941 ORTHO05D008361 7.0e-09 64.7 39 76.9
arahy.Tifrunner.gnm1.ann1.UB09PE Arachis hypogaea HOM05D006941 ORTHO05D008361 9.2e-09 64.3 41 80.5
CSS0029112 Camellia sinensis var. sinensis HOM05D006941 ORTHO05D008361 9.2e-09 64.3 45 64.4
Lj4g0022805 Lotus japonicus HOM05D006941 ORTHO05D008361 9.2e-09 64.3 41 78.0
Carub.0005s2918 Capsella rubella HOM05D006941 ORTHO05D008361 1.2e-08 63.9 39 71.8
Nitab4.5_0001624g0050 Nicotiana tabacum HOM05D006941 ORTHO05D008361 1.2e-08 63.9 52 57.7
QL06p006942 Quercus lobata HOM05D006941 ORTHO05D008361 1.2e-08 63.9 52 53.8
VMungo0464G0431 Vigna mungo HOM05D006941 ORTHO05D008361 1.2e-08 63.9 40 75.0
Cfa015511 Carpinus fangiana HOM05D006941 ORTHO05D008361 1.6e-08 63.5 39 71.8
Oeu048197.1 Olea europaea HOM05D010625 ORTHO05D008361 1.6e-08 63.5 41 68.3
SalBow1G8344 Salvia bowleyana HOM05D006941 ORTHO05D008361 1.6e-08 63.5 52 57.7
Sed0004518 Sechium edule HOM05D006941 ORTHO05D008361 1.6e-08 63.5 51 60.8
Actinidia32379 Actinidia chinensis HOM05D006941 ORTHO05D008361 2.0e-08 63.2 50 56.0
Eucgr.H03709 Eucalyptus grandis HOM05D006941 ORTHO05D008361 2.0e-08 63.2 40 72.5
Lalb_Chr22g0358511 Lupinus albus HOM05D006941 ORTHO05D008361 2.0e-08 63.2 52 61.5
Medtr2g005070 Medicago truncatula HOM05D006941 ORTHO05D008361 2.0e-08 63.2 51 62.7
Atru.chr4.2738 Acer truncatum HOM05D006941 ORTHO05D008361 2.7e-08 62.8 52 55.8
Ciclev10006724m.g Citrus clementina HOM05D006941 ORTHO05D008361 2.7e-08 62.8 40 72.5
MD16G1176900 Malus domestica HOM05D006941 ORTHO05D008361 3.5e-08 62.4 50 58.0
Peaxi162Scf01067g00024 Petunia axillaris HOM05D006941 ORTHO05D008361 3.5e-08 62.4 50 58.0
Thhalv10006352m.g Eutrema salsugineum HOM05D006941 ORTHO05D008361 4.6e-08 62.0 43 65.1
PGSC0003DMG400029912 Solanum tuberosum HOM05D006941 ORTHO05D008361 4.6e-08 62.0 45 62.2
Sabra07G0080600 Salix brachista HOM05D006941 ORTHO05D008361 7.8e-08 61.2 40 65.0
Sp5g00970 Schrenkiella parvula HOM05D006941 ORTHO05D008361 7.8e-08 61.2 48 58.3
C08p37290 Brassica napus HOM05D006941 ORTHO05D008361 1.0e-07 60.8 43 62.8
BolC8t51307H Brassica oleracea HOM05D006941 ORTHO05D008361 1.0e-07 60.8 43 62.8
CAN.G1327.4 Capsicum annuum HOM05D006941 ORTHO05D008361 1.0e-07 60.8 52 57.7
Medtr1g068580 Medicago truncatula HOM05D006941 ORTHO05D008361 1.0e-07 60.8 108 39.8
BcaC07g42761 Brassica carinata HOM05D006941 ORTHO05D008361 1.3e-07 60.5 43 62.8
A09p54410 Brassica napus HOM05D006941 ORTHO05D008361 1.7e-07 60.1 43 62.8
BraA09t40854Z Brassica rapa HOM05D006941 ORTHO05D008361 1.7e-07 60.1 43 62.8
ClCG06G005480 Citrullus lanatus HOM05D006941 ORTHO05D008361 1.7e-07 60.1 33 81.8
BcaB02g07336 Brassica carinata HOM05D006941 ORTHO05D008361 2.3e-07 59.7 60 55.0
PSO302G0016 Papaver somniferum HOM05D006941 ORTHO05D008361 3.0e-07 59.3 51 54.9
unitig_22.g6332 Utricularia gibba HOM05D006941 ORTHO05D008361 3.0e-07 59.3 48 54.2
BcaC07g40728 Brassica carinata HOM05D006941 ORTHO05D008361 3.9e-07 58.9 35 74.3
DCAR_030574 Daucus carota HOM05D006941 ORTHO05D008361 3.9e-07 58.9 46 60.9
AL5G45260 Arabidopsis lyrata HOM05D006941 ORTHO05D008361 5.0e-07 58.5 43 60.5
Medtr2g048470 Medicago truncatula HOM05D006941 ORTHO05D008361 6.6e-07 58.2 39 71.8
Aa31LG10G16360 Aethionema arabicum HOM05D006941 ORTHO05D008361 8.6e-07 57.8 44 59.1
AT3G62450 Arabidopsis thaliana HOM05D006941 ORTHO05D008361 1.5e-06 57.0 43 58.1
SHI00325 Sapria himalayana HOM05D006941 ORTHO05D008361 1.9e-06 56.6 34 70.6
Eucgr.H03674 Eucalyptus grandis HOM05D025724 ORTHO05D008361 2.5e-06 56.2 41 61.0
THA.LOC104820449 Tarenaya hassleriana HOM05D006941 ORTHO05D008361 5.6e-06 55.1 50 50.0


User provided reference genes

Program Settings