Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 4.7e-143 511.1 254 100.0
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 2.5e-107 392.5 254 81.5
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.2e-93 347.1 258 72.1
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 3.6e-90 335.5 258 70.2
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 8.8e-89 330.9 258 68.6
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 4.7e-82 308.5 255 63.9
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 6.1e-82 308.1 253 65.2
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.0e-81 307.4 259 63.7
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 2.3e-81 306.2 259 63.3
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 5.2e-81 305.1 259 62.9
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.7e-77 292.7 258 60.9
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 5.9e-77 291.6 258 60.5
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 5.9e-77 291.6 258 60.5
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 1.5e-75 287.0 260 59.6
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 7.2e-75 284.6 261 57.9
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 1.2e-74 283.9 258 62.0
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 1.6e-74 283.5 259 59.8
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 2.1e-74 283.1 265 58.1
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 3.6e-74 282.3 258 62.0
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 6.1e-74 281.6 258 61.6
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 3.0e-73 279.3 254 57.9
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 3.0e-73 279.3 255 59.2
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 5.2e-73 278.5 255 59.2
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 2.0e-72 276.6 256 58.2
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 2.6e-72 276.2 256 59.4
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 2.6e-72 276.2 253 55.7
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 9.8e-72 274.2 257 58.0
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 2.8e-71 272.7 254 58.3
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 3.7e-71 272.3 254 56.7
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 6.3e-71 271.6 254 56.7
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 8.3e-71 271.2 254 55.1
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.1e-70 270.8 254 56.7
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.8e-70 270.0 257 57.6
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 2.4e-70 269.6 258 55.8
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 4.1e-70 268.9 254 55.9
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 4.1e-70 268.9 254 55.9
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 4.1e-70 268.9 256 58.6
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 7.0e-70 268.1 256 56.2
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 7.0e-70 268.1 260 58.1
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.7e-69 266.2 256 56.6
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.7e-69 266.2 178 73.6
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 3.5e-69 265.8 258 55.8
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 5.9e-69 265.0 252 54.0
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 5.9e-69 265.0 254 54.3
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 7.7e-69 264.6 253 55.7
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 7.7e-69 264.6 255 57.3
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 1.3e-68 263.8 256 56.2
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 1.3e-68 263.8 254 56.3
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 1.7e-68 263.5 254 55.9
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 2.2e-68 263.1 254 53.9
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 2.2e-68 263.1 256 55.5
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 6.5e-68 261.5 185 69.2
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.5e-67 260.4 180 68.9
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.9e-67 260.0 180 68.3
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 2.5e-67 259.6 180 68.9
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 3.2e-67 259.2 181 69.1
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 3.2e-67 259.2 253 54.2
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 5.5e-67 258.5 259 54.4
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 5.5e-67 258.5 254 55.9
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 9.4e-67 257.7 185 68.1
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.2e-66 257.3 266 53.8
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 1.6e-66 256.9 251 55.8
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.6e-66 256.9 185 67.6
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 2.1e-66 256.5 253 56.1
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 2.1e-66 256.5 260 53.1
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 3.6e-66 255.8 254 53.9
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 6.1e-66 255.0 254 54.3
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 8.0e-66 254.6 251 55.8
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 8.0e-66 254.6 254 55.5
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 8.0e-66 254.6 251 55.4
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 8.0e-66 254.6 251 55.4
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 8.0e-66 254.6 256 55.1
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 8.0e-66 254.6 255 55.3
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 1.0e-65 254.2 254 52.8
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.4e-65 253.8 254 53.5
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.4e-65 253.8 254 53.5
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 1.8e-65 253.4 251 55.0
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 6.8e-65 251.5 251 55.4
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 8.8e-65 251.1 185 65.4
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 8.8e-65 251.1 181 68.0
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 8.8e-65 251.1 181 66.9
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.2e-64 250.8 270 53.7
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 1.2e-64 250.8 251 55.4
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 1.2e-64 250.8 254 55.1
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 1.2e-64 250.8 254 55.1
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.2e-64 250.8 178 68.5
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 1.5e-64 250.4 253 54.5
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 3.4e-64 249.2 251 53.4
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 3.4e-64 249.2 253 55.7
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 3.4e-64 249.2 253 55.7
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 3.4e-64 249.2 252 54.4
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 4.4e-64 248.8 185 66.5
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 5.7e-64 248.4 175 68.0
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 5.7e-64 248.4 258 53.1
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 1.3e-63 247.3 254 51.6
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.3e-63 247.3 254 53.5
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 1.7e-63 246.9 185 66.5
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 2.2e-63 246.5 230 53.9
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 3.7e-63 245.7 254 53.9
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 3.7e-63 245.7 205 57.1
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.7e-63 245.7 240 55.8
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 4.9e-63 245.4 178 68.0
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 6.3e-63 245.0 176 67.0
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 8.3e-63 244.6 185 65.4
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 8.3e-63 244.6 254 52.4
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 1.1e-62 244.2 253 53.8
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.1e-62 244.2 254 53.1
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.1e-62 244.2 254 53.1
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 1.1e-62 244.2 181 62.4
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 2.4e-62 243.0 163 71.8
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 4.1e-62 242.3 258 49.6
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 9.2e-62 241.1 261 50.2
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 2.0e-61 240.0 241 53.9
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 2.0e-61 240.0 258 51.2
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.0e-60 237.7 206 54.4
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 2.3e-60 236.5 252 51.2
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 5.0e-60 235.3 184 62.0
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 8.6e-60 234.6 178 64.0
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 1.1e-59 234.2 261 50.6
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 1.1e-59 234.2 257 50.6
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.9e-59 233.4 181 61.9
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 2.8e-58 229.6 239 53.1
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.0e-57 227.6 163 66.9
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 3.0e-57 226.1 239 52.3
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 3.4e-56 222.6 151 70.2
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 3.7e-55 219.2 168 60.7
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 5.4e-54 215.3 235 51.5
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 1.6e-53 213.8 172 58.7
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 2.7e-53 213.0 172 58.7
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.5e-53 212.6 147 68.7
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 3.0e-52 209.5 172 56.4
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 8.6e-52 208.0 188 52.1
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 5.6e-51 205.3 172 55.2
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 7.3e-51 204.9 172 57.0
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 2.8e-50 203.0 267 44.6
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 1.0e-49 201.1 235 49.4
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.5e-48 194.9 172 59.3
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 7.5e-48 194.9 150 70.7
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 2.9e-47 193.0 178 52.8
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 7.0e-46 188.3 244 43.0
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 9.2e-46 188.0 163 60.7
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.8e-42 176.4 132 59.8
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 1.3e-39 167.5 112 69.6
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.7e-37 159.8 147 56.5
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 8.1e-34 148.3 106 66.0
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 4.4e-32 142.5 172 41.9
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 5.8e-32 142.1 171 39.2
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 1.4e-30 137.5 161 42.9
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 2.3e-28 130.2 174 39.7
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 6.2e-26 122.1 155 40.6
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.0e-21 105.5 76 63.2
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 6.2e-18 95.5 161 36.6
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 4.5e-16 89.4 88 50.0
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 3.2e-14 83.2 84 48.8
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 4.2e-14 82.8 124 46.0
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 1.5e-08 64.3 50 58.0
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 1.5e-08 64.3 50 58.0
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 1.4e-06 57.8 56 50.0


User provided reference genes

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