Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 5.8e-158 560.8 282 100.0
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 1.3e-120 436.8 279 78.9
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 7.4e-113 411.0 279 74.9
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 2.3e-106 389.4 279 71.3
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 3.0e-106 389.0 279 71.7
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 8.8e-106 387.5 279 71.3
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 3.3e-105 385.6 222 85.6
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 4.4e-105 385.2 285 69.5
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 5.7e-105 384.8 259 76.1
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 2.2e-104 382.9 280 70.7
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 2.0e-102 376.3 279 70.6
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 2.6e-102 375.9 248 75.8
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 4.5e-102 375.2 284 70.4
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 7.7e-102 374.4 284 69.4
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 1.7e-101 373.2 263 71.1
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 2.2e-101 372.9 233 79.0
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 2.9e-101 372.5 223 83.9
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 3.8e-101 372.1 281 69.8
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 3.8e-101 372.1 286 70.3
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 5.0e-101 371.7 284 69.4
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 6.5e-101 371.3 281 69.0
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 8.5e-101 370.9 246 77.2
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 1.1e-100 370.5 278 72.3
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 3.2e-100 369.0 283 67.8
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 4.2e-100 368.6 245 76.7
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 4.2e-100 368.6 253 73.9
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 5.5e-100 368.2 283 67.8
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 7.2e-100 367.9 252 72.2
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 2.7e-99 365.9 265 72.1
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 3.6e-99 365.5 247 75.7
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 4.7e-99 365.2 286 67.8
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 6.1e-99 364.8 245 75.5
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 1.0e-98 364.0 252 73.4
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 1.0e-98 364.0 231 78.8
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 1.4e-98 363.6 273 70.0
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.4e-98 363.6 286 68.9
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.0e-98 362.5 246 76.8
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 4.0e-98 362.1 232 79.3
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 4.0e-98 362.1 229 79.5
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 6.7e-98 361.3 231 79.7
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 1.1e-97 360.5 291 66.7
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.0e-97 359.8 253 75.1
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 2.0e-97 359.8 229 79.0
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 2.0e-97 359.8 247 74.5
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 2.0e-97 359.8 233 76.0
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 2.6e-97 359.4 286 66.1
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 2.6e-97 359.4 285 67.4
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 2.6e-97 359.4 286 68.9
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 2.6e-97 359.4 229 79.5
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 3.3e-97 359.0 232 75.4
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 3.3e-97 359.0 288 68.1
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.4e-97 358.6 291 68.0
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 4.4e-97 358.6 231 78.8
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 5.7e-97 358.2 276 68.8
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 5.7e-97 358.2 286 66.1
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 5.7e-97 358.2 250 73.6
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 5.7e-97 358.2 276 69.2
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 9.7e-97 357.5 283 67.1
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 9.7e-97 357.5 283 67.1
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 9.7e-97 357.5 286 68.2
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 1.7e-96 356.7 230 77.4
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 1.7e-96 356.7 280 67.5
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 2.2e-96 356.3 232 76.7
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 2.2e-96 356.3 282 66.3
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.8e-96 355.9 287 66.6
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 2.8e-96 355.9 234 76.9
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 4.8e-96 355.1 285 66.7
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 4.8e-96 355.1 272 67.6
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 6.3e-96 354.8 272 67.6
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 6.3e-96 354.8 286 68.2
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 8.2e-96 354.4 278 67.3
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 8.2e-96 354.4 281 65.5
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.1e-95 354.0 261 69.7
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.1e-95 354.0 231 77.1
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.4e-95 353.6 289 65.7
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 1.4e-95 353.6 275 66.9
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 2.4e-95 352.8 260 70.0
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 2.4e-95 352.8 238 74.4
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 3.1e-95 352.4 280 66.8
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 3.1e-95 352.4 280 66.8
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 3.1e-95 352.4 280 66.8
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 5.3e-95 351.7 235 73.2
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 7.0e-95 351.3 280 70.0
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.2e-94 350.5 233 74.7
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.2e-94 350.5 233 74.7
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 2.0e-94 349.7 234 74.8
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 2.6e-94 349.4 301 64.5
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 4.5e-94 348.6 229 76.9
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 5.9e-94 348.2 279 66.3
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 1.3e-93 347.1 281 66.5
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 1.3e-93 347.1 229 75.5
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 2.2e-93 346.3 288 64.9
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 2.2e-93 346.3 288 64.9
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 5.0e-93 345.1 281 66.9
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 6.5e-93 344.7 232 73.3
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 1.1e-92 344.0 229 76.4
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.9e-92 343.2 272 67.6
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 4.7e-91 338.6 232 73.3
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 1.8e-90 336.7 232 72.0
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 8.8e-90 334.3 288 63.9
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 1.7e-88 330.1 252 66.7
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 2.8e-88 329.3 252 66.7
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.8e-88 328.6 233 71.2
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 4.1e-87 325.5 241 66.4
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 3.5e-86 322.4 260 61.2
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 8.5e-85 317.8 200 79.0
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 8.5e-85 317.8 261 64.8
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 6.1e-83 311.6 199 79.9
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 8.0e-83 311.2 255 66.7
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 1.0e-82 310.8 292 57.5
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 3.0e-82 309.3 200 79.0
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 1.5e-81 307.0 200 76.5
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 5.7e-81 305.1 199 76.9
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 7.5e-81 304.7 194 80.4
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.2e-80 303.1 217 69.6
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.2e-80 303.1 273 58.2
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 8.3e-80 301.2 246 63.4
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 3.5e-78 295.8 202 73.8
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 2.9e-77 292.7 235 66.0
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 9.5e-76 287.7 224 68.3
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 8.0e-75 284.6 232 63.8
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 2.3e-74 283.1 199 70.9
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.0e-74 282.3 199 71.9
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 2.9e-72 276.2 240 59.6
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 3.7e-72 275.8 229 65.9
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.1e-71 274.2 235 65.5
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 1.4e-71 273.9 237 60.3
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 2.7e-70 269.6 182 75.3
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 8.6e-69 264.6 283 53.4
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 5.6e-68 261.9 188 74.5
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 7.3e-68 261.5 229 58.5
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 8.9e-66 254.6 167 75.4
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 7.0e-63 245.0 238 54.6
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 2.8e-59 233.0 231 54.5
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 5.8e-57 225.3 138 78.3
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 6.0e-54 215.3 137 77.4
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 7.8e-54 214.9 261 46.4
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 3.0e-53 213.0 146 73.3
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 2.6e-49 199.9 126 75.4
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.3e-45 186.8 131 71.8
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.9e-45 186.0 131 72.5
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 5.1e-45 185.7 168 58.3
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.1e-39 167.9 131 67.2
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.3e-35 154.5 158 56.3
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.7e-32 144.1 115 61.7
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.7e-32 144.1 115 61.7
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.9e-32 143.3 118 66.9
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 7.9e-30 135.2 124 58.1
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 1.8e-26 124.0 157 48.4
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 2.4e-26 123.6 223 37.2
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 4.9e-24 115.9 74 74.3
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.9e-23 114.0 74 73.0
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.4e-23 113.6 74 73.0
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 3.2e-23 113.2 74 73.0
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.2e-22 111.3 74 70.3
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.0e-21 108.2 71 77.5
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 5.6e-20 102.4 90 58.9
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 8.1e-19 98.6 64 79.7
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 6.5e-16 89.0 63 76.2
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 8.4e-16 88.6 66 72.7
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.1e-15 88.2 64 70.3
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 9.3e-15 85.1 64 70.3
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 5.7e-12 75.9 54 77.8
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 6.9e-10 68.9 44 75.0
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 2.6e-09 67.0 187 29.4
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 4.5e-09 66.2 64 53.1
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 7.6e-09 65.5 44 68.2
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 4.2e-07 59.7 60 53.3
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 9.3e-07 58.5 82 46.3
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 4.6e-06 56.2 38 63.2
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 4.6e-06 56.2 38 63.2


User provided reference genes

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