Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 2.7e-149 531.9 265 100.0
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.2e-99 367.1 271 71.6
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 3.8e-95 352.1 221 77.4
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 1.1e-94 350.5 274 67.5
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 2.8e-93 345.9 246 72.0
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 2.3e-92 342.8 262 68.3
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 2.6e-91 339.3 244 70.1
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 4.4e-91 338.6 248 69.8
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 7.5e-91 337.8 296 63.2
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 9.8e-91 337.4 212 79.2
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 1.3e-90 337.0 214 77.6
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 2.2e-90 336.3 213 78.4
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 2.8e-90 335.9 275 66.2
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 4.1e-89 332.0 291 62.9
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 4.1e-89 332.0 291 62.9
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 7.0e-89 331.3 272 65.1
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 9.2e-89 330.9 246 69.5
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.2e-88 330.5 271 64.2
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 2.0e-88 329.7 231 72.7
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 3.5e-88 328.9 270 65.2
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 4.5e-88 328.6 213 76.5
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 5.9e-88 328.2 265 66.0
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 1.7e-87 326.6 245 67.8
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.3e-87 326.2 202 79.2
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 2.9e-87 325.9 289 63.0
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 3.9e-87 325.5 229 72.9
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 8.6e-87 324.3 246 68.3
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 8.6e-87 324.3 285 63.2
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 4.3e-86 322.0 277 63.9
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 4.7e-85 318.5 277 63.9
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 6.8e-84 314.7 295 59.3
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.2e-83 313.9 224 71.0
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 7.5e-83 311.2 284 61.3
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 1.7e-82 310.1 237 67.9
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 2.2e-82 309.7 258 63.2
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 2.2e-82 309.7 265 61.5
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 4.9e-82 308.5 240 66.2
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 4.9e-82 308.5 240 66.2
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 4.9e-82 308.5 240 66.2
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 4.9e-82 308.5 223 69.1
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 1.1e-81 307.4 239 66.9
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 1.1e-81 307.4 215 70.2
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 2.4e-81 306.2 287 59.6
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 7.0e-81 304.7 291 59.1
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 7.0e-81 304.7 187 77.5
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 1.2e-80 303.9 224 70.1
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 1.2e-80 303.9 213 70.9
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 2.0e-80 303.1 214 72.0
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 2.0e-80 303.1 265 61.1
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 3.5e-80 302.4 252 64.3
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 4.6e-80 302.0 273 59.7
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 1.0e-79 300.8 288 57.6
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 1.7e-79 300.1 291 58.4
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 1.7e-79 300.1 287 58.2
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 2.3e-79 299.7 256 62.9
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 3.0e-79 299.3 266 60.5
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 3.0e-79 299.3 234 69.2
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 1.1e-78 297.4 266 59.8
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 1.9e-78 296.6 286 58.4
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 3.3e-78 295.8 286 58.0
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 3.3e-78 295.8 292 54.8
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 4.3e-78 295.4 244 63.5
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 2.1e-77 293.1 235 66.0
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 2.1e-77 293.1 300 55.0
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 6.2e-77 291.6 200 74.5
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 8.0e-77 291.2 255 60.0
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 1.8e-76 290.0 296 55.4
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 8.9e-76 287.7 254 57.5
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 2.6e-75 286.2 214 68.7
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 3.4e-75 285.8 294 55.4
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 3.4e-75 285.8 305 55.1
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 9.8e-75 284.3 271 57.6
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 2.2e-74 283.1 289 56.7
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.2e-74 283.1 224 65.2
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 4.9e-74 282.0 210 67.6
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 4.9e-74 282.0 210 67.6
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 4.9e-74 282.0 211 68.2
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 6.4e-74 281.6 214 67.8
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 8.3e-74 281.2 210 68.1
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 1.1e-73 280.8 206 70.9
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 2.4e-73 279.6 238 60.1
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 4.1e-73 278.9 210 67.1
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 5.4e-73 278.5 212 67.0
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 3.0e-71 272.7 238 60.5
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 5.1e-71 271.9 216 63.4
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 6.6e-71 271.6 238 58.0
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 1.5e-70 270.4 232 59.1
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 1.5e-70 270.4 216 63.0
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 4.3e-70 268.9 225 62.7
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 4.3e-70 268.9 217 62.7
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 2.8e-69 266.2 297 52.2
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 2.8e-69 266.2 237 62.9
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 1.4e-68 263.8 232 57.8
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 1.8e-68 263.5 244 56.6
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 5.2e-68 261.9 151 82.1
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 8.9e-68 261.2 216 62.5
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 1.2e-67 260.8 239 59.8
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 1.5e-67 260.4 274 54.7
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 2.2e-66 256.5 217 60.8
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 4.6e-64 248.8 210 63.8
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 1.1e-60 237.7 232 55.2
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 6.4e-58 228.4 272 50.0
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 3.6e-53 212.6 232 56.5
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 1.5e-51 207.2 118 82.2
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 7.1e-49 198.4 127 74.8
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 4.6e-48 195.7 230 49.1
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 4.3e-46 189.1 191 57.1
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 8.1e-45 184.9 226 50.4
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 7.6e-35 151.8 192 43.2
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 1.3e-29 134.4 108 67.6
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 2.8e-29 133.3 144 55.6
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 3.1e-28 129.8 198 39.4
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 4.0e-28 129.4 179 45.3
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 6.9e-28 128.6 138 56.5
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 1.3e-23 114.4 106 59.4
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 7.4e-22 108.6 85 65.9
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 2.0e-19 100.5 64 70.3
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 5.5e-17 92.4 124 44.4
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 2.7e-16 90.1 138 34.8
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 2.5e-14 83.6 107 42.1
SalBow6G2479 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.8e-12 77.4 127 45.7
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 4.1e-12 76.3 56 60.7
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 7.7e-11 72.0 89 50.6
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 2.2e-10 70.5 116 43.1
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 1.2e-08 64.7 165 31.5
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.6e-08 64.3 148 33.8
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.6e-08 64.3 148 33.8
SalBow6G1357 Salvia bowleyana HOM05D003575 ORTHO05D003587 1.8e-07 60.8 51 66.7
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 3.0e-07 60.1 116 33.6
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 3.9e-07 59.7 146 32.2
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 6.7e-07 58.9 107 32.7
SalBow3G0890 Salvia bowleyana HOM05D001251 ORTHO05D007813 8.8e-07 58.5 31 83.9
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 1.1e-06 58.2 144 29.2
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.1e-06 58.2 142 31.0
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 1.1e-06 58.2 120 37.5
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 3.3e-06 56.6 146 30.8
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 4.4e-06 56.2 101 35.6
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 4.4e-06 56.2 121 35.5
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 4.4e-06 56.2 146 31.5
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 5.7e-06 55.8 134 31.3
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 5.7e-06 55.8 114 35.1
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 7.4e-06 55.5 146 30.8
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 7.4e-06 55.5 144 29.9
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 9.7e-06 55.1 173 28.9


User provided reference genes

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