Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold113G31746 Striga asiatica HOM05D000055 ORTHO05D406070 2.8e-61 238.4 122 100.0
SGA_v2.0_scaffold75G24971 Striga asiatica HOM05D000055 ORTHO05D001675 1.1e-09 67.0 41 75.6
SalBow4G0517 Salvia bowleyana HOM05D000055 ORTHO05D001675 1.5e-09 66.6 41 75.6
Oeu013147.1 Olea europaea HOM05D000055 ORTHO05D001675 1.9e-09 66.2 41 75.6
Ciclev10011177m.g Citrus clementina HOM05D000055 ORTHO05D001675 3.3e-09 65.5 40 77.5
Migut.J00278 Erythranthe guttata HOM05D000055 ORTHO05D001675 4.3e-09 65.1 41 70.7
Sed0012814 Sechium edule HOM05D000055 ORTHO05D001675 4.3e-09 65.1 40 75.0
Migut.L01969 Erythranthe guttata HOM05D000055 ORTHO05D001675 5.6e-09 64.7 41 73.2
SGA_v2.0_scaffold85G26825 Striga asiatica HOM05D000229 ORTHO05D001675 5.6e-09 64.7 41 73.2
ClCG10G021490 Citrullus lanatus HOM05D000055 ORTHO05D001675 9.6e-09 63.9 40 75.0
Zm00001eb001590 Zea mays HOM05D000055 ORTHO05D001675 9.6e-09 63.9 41 68.3
MSTRG.19060 Avicennia marina HOM05D000055 ORTHO05D001675 1.3e-08 63.5 41 70.7
Solyc10g084930.2 Solanum lycopersicum HOM05D000055 ORTHO05D001675 1.3e-08 63.5 40 75.0
Sopen10g034390 Solanum pennellii HOM05D000055 ORTHO05D001675 1.3e-08 63.5 40 75.0
unitig_8.g4425 Utricularia gibba HOM05D000055 ORTHO05D001675 1.6e-08 63.2 44 65.9
DCAR_012134 Daucus carota HOM05D000055 ORTHO05D001675 2.8e-08 62.4 40 72.5
Sed0006565 Sechium edule HOM05D000055 ORTHO05D001675 2.8e-08 62.4 40 72.5
MELO3C009226.2 Cucumis melo HOM05D000055 ORTHO05D001675 3.7e-08 62.0 40 72.5
Dinv35552 Davidia involucrata HOM05D000055 ORTHO05D001675 3.7e-08 62.0 40 72.5
Actinidia13825 Actinidia chinensis HOM05D000055 ORTHO05D001675 4.8e-08 61.6 40 72.5
Ah.02g115410 Amaranthus hybridus HOM05D000055 ORTHO05D001675 4.8e-08 61.6 40 70.0
EL10Ac5g11559 Beta vulgaris HOM05D000055 ORTHO05D001675 4.8e-08 61.6 40 70.0
Cc06_g02180 Coffea canephora HOM05D000055 ORTHO05D001675 4.8e-08 61.6 40 72.5
DCAR_028772 Daucus carota HOM05D000055 ORTHO05D001675 4.8e-08 61.6 40 72.5
HanXRQChr04g0124561 Helianthus annuus HOM05D000055 ORTHO05D001675 4.8e-08 61.6 40 70.0
HanXRQChr06g0177391 Helianthus annuus HOM05D000055 ORTHO05D001675 4.8e-08 61.6 40 70.0
Sc01g0004700 Simmondsia chinensis HOM05D000055 ORTHO05D001675 4.8e-08 61.6 40 72.5
BcaB01g03749 Brassica carinata HOM05D000055 ORTHO05D001675 6.2e-08 61.2 40 70.0
A03p20890 Brassica napus HOM05D000055 ORTHO05D001675 6.2e-08 61.2 40 70.0
CAN.G502.28 Capsicum annuum HOM05D000055 ORTHO05D001675 6.2e-08 61.2 40 72.5
Lj2A87G48 Lonicera japonica HOM05D000055 ORTHO05D001675 6.2e-08 61.2 40 70.0
QL07p028568 Quercus lobata HOM05D000055 ORTHO05D001675 6.2e-08 61.2 40 70.0
GSVIVG01034089001 Vitis vinifera HOM05D000055 ORTHO05D001675 6.2e-08 61.2 40 70.0
AL5G34910 Arabidopsis lyrata HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 70.0
AT3G53930 Arabidopsis thaliana HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 70.0
BcaB02g08501 Brassica carinata HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 70.0
BcaC01g05589 Brassica carinata HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 70.0
BcaC02g09123 Brassica carinata HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 70.0
A04p05830 Brassica napus HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 70.0
C04p38670 Brassica napus HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 70.0
BolC4t25445H Brassica oleracea HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 70.0
BraA04t16280Z Brassica rapa HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 70.0
Thhalv10010160m.g Eutrema salsugineum HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 70.0
FvH4_6g12940 Fragaria vesca HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 70.0
FAN02G1079 Fragaria x ananassa HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 70.0
FAN05G3613 Fragaria x ananassa HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 70.0
FAN09G1756 Fragaria x ananassa HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 70.0
FAN14G4822 Fragaria x ananassa HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 70.0
MD04G1136900 Malus domestica HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 70.0
MD12G1151100 Malus domestica HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 70.0
Nitab4.5_0000362g0050 Nicotiana tabacum HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 70.0
Nitab4.5_0000828g0030 Nicotiana tabacum HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 72.5
Nitab4.5_0002170g0030 Nicotiana tabacum HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 72.5
Peaxi162Scf00318g00323 Petunia axillaris HOM05D000055 ORTHO05D001675 8.1e-08 60.8 43 67.4
Prupe.6G262900 Prunus persica HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 70.0
RcHm_v2.0_Chr3g0465041 Rosa chinensis HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 70.0
PGSC0003DMG400011011 Solanum tuberosum HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 72.5
THA.LOC104823411 Tarenaya hassleriana HOM05D000055 ORTHO05D001675 8.1e-08 60.8 40 72.5
Atru.chr8.2076 Acer truncatum HOM05D000055 ORTHO05D001675 1.1e-07 60.5 41 65.9
CAN.G229.32 Capsicum annuum HOM05D000055 ORTHO05D001675 1.1e-07 60.5 40 70.0
Os03g0122000 Oryza sativa ssp. japonica HOM05D000055 ORTHO05D001675 1.1e-07 60.5 41 65.9
PGR004G0083 Punica granatum HOM05D000055 ORTHO05D001675 1.1e-07 60.5 40 70.0
PGR107G0004 Punica granatum HOM05D000055 ORTHO05D001675 1.1e-07 60.5 40 70.0
Rhsim05G0196900 Rhododendron simsii HOM05D000055 ORTHO05D001675 1.1e-07 60.5 40 70.0
Solyc09g011320.3 Solanum lycopersicum HOM05D000055 ORTHO05D001675 1.1e-07 60.5 40 70.0
Sopen09g006040 Solanum pennellii HOM05D000055 ORTHO05D001675 1.1e-07 60.5 40 70.0
PGSC0003DMG400008887 Solanum tuberosum HOM05D000055 ORTHO05D001675 1.1e-07 60.5 40 70.0
Cfa017311 Carpinus fangiana HOM05D000055 ORTHO05D001675 1.4e-07 60.1 40 67.5
CsaV3_3G034550 Cucumis sativus L. HOM05D000055 ORTHO05D001675 1.4e-07 60.1 40 70.0
Dinv37130 Davidia involucrata HOM05D000055 ORTHO05D001675 1.4e-07 60.1 40 70.0
Mapoly0022s0025 Marchantia polymorpha HOM05D000055 ORTHO05D001675 1.4e-07 60.1 40 70.0
Sp5g08470 Schrenkiella parvula HOM05D000055 ORTHO05D001675 1.4e-07 60.1 40 70.0
Gohir.D13G095000 Gossypium hirsutum HOM05D000055 ORTHO05D001675 1.8e-07 59.7 40 70.0
Lsat_1_v5_gn_8_84601 Lactuca sativa HOM05D000055 ORTHO05D001675 1.8e-07 59.7 40 67.5
Rhsim04G0162700 Rhododendron simsii HOM05D000055 ORTHO05D001675 1.8e-07 59.7 40 70.0
vmacro08632 Vaccinium macrocarpon HOM05D000055 ORTHO05D001675 1.8e-07 59.7 40 70.0
HPP92_019229 Vanilla planifolia HOM05D000055 ORTHO05D001675 1.8e-07 59.7 40 70.0
AL4G34790 Arabidopsis lyrata HOM05D000055 ORTHO05D001675 2.4e-07 59.3 41 65.9
Haze_20868 Corylus avellana HOM05D000055 ORTHO05D001675 2.4e-07 59.3 40 67.5
Eucgr.K03054 Eucalyptus grandis HOM05D000055 ORTHO05D001675 2.4e-07 59.3 40 67.5
Gorai.001G247200 Gossypium raimondii HOM05D000055 ORTHO05D001675 2.4e-07 59.3 40 70.0
MBI14_g09004_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D001675 2.4e-07 59.3 40 67.5
Manes.09G096800 Manihot esculenta HOM05D000055 ORTHO05D001675 2.4e-07 59.3 40 70.0
PSO513G0088 Papaver somniferum HOM05D000055 ORTHO05D001675 2.4e-07 59.3 40 67.5
Potri.006G092900 Populus trichocarpa HOM05D000055 ORTHO05D001675 2.4e-07 59.3 40 70.0
Sabra16G0104000 Salix brachista HOM05D000055 ORTHO05D001675 2.4e-07 59.3 40 70.0
CSS0001934 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D001675 3.1e-07 58.9 40 70.0
Cre09.g391245 Chlamydomonas reinhardtii HOM05D000055 ORTHO05D001675 3.1e-07 58.9 41 65.9
ECA236G0327 Erigeron canadensis HOM05D000055 ORTHO05D001675 3.1e-07 58.9 40 67.5
Gohir.A13G099000 Gossypium hirsutum HOM05D000055 ORTHO05D001675 3.1e-07 58.9 40 70.0
Nn2g13503 Nelumbo nucifera HOM05D000055 ORTHO05D001675 3.1e-07 58.9 40 67.5
Pp3c21_2050 Physcomitrium patens HOM05D000055 ORTHO05D001675 3.1e-07 58.9 40 70.0
SMO239G0045 Selaginella moellendorffii HOM05D000055 ORTHO05D001675 3.1e-07 58.9 40 70.0
SMO307G0079 Selaginella moellendorffii HOM05D000055 ORTHO05D001675 3.1e-07 58.9 40 70.0
CANSAT35G1498 Cannabis sativa HOM05D000055 ORTHO05D001675 4.0e-07 58.5 40 70.0
Gohir.A04G085400 Gossypium hirsutum HOM05D000055 ORTHO05D001675 4.0e-07 58.5 40 70.0
Gohir.D04G125000 Gossypium hirsutum HOM05D000055 ORTHO05D001675 4.0e-07 58.5 40 70.0
Gorai.012G108100 Gossypium raimondii HOM05D000055 ORTHO05D001675 4.0e-07 58.5 40 70.0
Lj3g0009590 Lotus japonicus HOM05D000055 ORTHO05D001675 4.0e-07 58.5 40 67.5
Pp3c18_19590 Physcomitrium patens HOM05D000055 ORTHO05D001675 4.0e-07 58.5 41 65.9
Potri.016G104900 Populus trichocarpa HOM05D000055 ORTHO05D001675 4.0e-07 58.5 40 70.0
TAR623G1189 Trochodendron aralioides HOM05D000055 ORTHO05D001675 4.0e-07 58.5 40 67.5
ATR0661G125 Amborella trichopoda HOM05D000055 ORTHO05D001675 5.3e-07 58.2 40 65.0
Carub.0004s1976 Capsella rubella HOM05D000055 ORTHO05D001675 5.3e-07 58.2 40 67.5
CiPaw.09G199700 Carya illinoinensis HOM05D000055 ORTHO05D001675 5.3e-07 58.2 40 67.5
AUR62043662 Chenopodium quinoa HOM05D000055 ORTHO05D001675 5.3e-07 58.2 40 67.5
Thhalv10016391m.g Eutrema salsugineum HOM05D000055 ORTHO05D001675 5.3e-07 58.2 40 67.5
Nn2g11263 Nelumbo nucifera HOM05D000055 ORTHO05D001675 5.3e-07 58.2 40 70.0
Peaxi162Scf00094g00112 Petunia axillaris HOM05D000055 ORTHO05D001675 5.3e-07 58.2 40 70.0
Sabra06G0070600 Salix brachista HOM05D000055 ORTHO05D001675 6.9e-07 57.8 40 67.5
TWI53G0243 Tripterygium wilfordii HOM05D000055 ORTHO05D001675 6.9e-07 57.8 40 67.5
Aa31sc88G40 Aethionema arabicum HOM05D000055 ORTHO05D001675 9.0e-07 57.4 40 67.5
Aqoxy1G00820 Aquilegia oxysepala HOM05D000055 ORTHO05D001675 9.0e-07 57.4 40 67.5
Carub.0005s2050 Capsella rubella HOM05D000055 ORTHO05D001675 9.0e-07 57.4 40 67.5
Oeu001845.1 Olea europaea HOM05D000055 ORTHO05D001675 9.0e-07 57.4 40 67.5
Thecc.05G031200 Theobroma cacao HOM05D000055 ORTHO05D001675 9.0e-07 57.4 40 67.5
TAR369G0359 Trochodendron aralioides HOM05D000055 ORTHO05D001675 9.0e-07 57.4 40 67.5
Ca_20657_v3 Cicer arietinum L. HOM05D000055 ORTHO05D001675 1.2e-06 57.0 40 65.0
Glyma.01G099600 Glycine max HOM05D000055 ORTHO05D001675 1.2e-06 57.0 40 65.0
Lalb_Chr07g0193101 Lupinus albus HOM05D000055 ORTHO05D001675 1.2e-06 57.0 40 65.0
Lalb_Chr12g0209491 Lupinus albus HOM05D000055 ORTHO05D001675 1.2e-06 57.0 40 65.0
Psat7g241920 Pisum sativum HOM05D000055 ORTHO05D001675 1.2e-06 57.0 40 65.0
PSO339G0089 Papaver somniferum HOM05D000055 ORTHO05D001675 1.5e-06 56.6 40 65.0
TAR636G3148 Trochodendron aralioides HOM05D000055 ORTHO05D001675 1.5e-06 56.6 40 67.5
unitig_578.g15882 Utricularia gibba HOM05D000055 ORTHO05D001675 1.5e-06 56.6 41 63.4
ATR0559G304 Amborella trichopoda HOM05D000055 ORTHO05D001675 2.0e-06 56.2 40 65.0
AT2G37840 Arabidopsis thaliana HOM05D000055 ORTHO05D001675 2.0e-06 56.2 40 65.0
C03p24540 Brassica napus HOM05D000055 ORTHO05D001675 2.0e-06 56.2 41 68.3
BolC3t14852H Brassica oleracea HOM05D000055 ORTHO05D001675 2.0e-06 56.2 41 68.3
Cpa.g.sc56.42 Carica papaya HOM05D000055 ORTHO05D001675 2.0e-06 56.2 40 67.5
CDE03G0126 Ceratophyllum demersum HOM05D000055 ORTHO05D001675 2.0e-06 56.2 40 62.5
CDE04G2119 Ceratophyllum demersum HOM05D000055 ORTHO05D001675 2.0e-06 56.2 40 62.5
Medtr4g019410 Medicago truncatula HOM05D000055 ORTHO05D001675 2.6e-06 55.8 40 65.0
PSO339G1793 Papaver somniferum HOM05D000055 ORTHO05D001675 2.6e-06 55.8 40 65.0
PSO384G0871 Papaver somniferum HOM05D000055 ORTHO05D001675 2.6e-06 55.8 40 65.0
Phvul.010G015100 Phaseolus vulgaris HOM05D000055 ORTHO05D001675 2.6e-06 55.8 40 65.0
Hund15242 Selenicereus undatus HOM05D000055 ORTHO05D001675 2.6e-06 55.8 40 62.5
Hund16760 Selenicereus undatus HOM05D000055 ORTHO05D001675 2.6e-06 55.8 40 67.5
TPR.G32523 Trifolium pratense HOM05D000055 ORTHO05D001675 2.6e-06 55.8 40 65.0
TWI77G0832 Tripterygium wilfordii HOM05D000055 ORTHO05D001675 2.6e-06 55.8 40 62.5
AagrBONN_evm.TU.Sc2ySwM_228.3183 Anthoceros agrestis HOM05D000055 ORTHO05D001675 3.4e-06 55.5 40 62.5
CBR_g36585 Chara braunii HOM05D000055 ORTHO05D001675 3.4e-06 55.5 40 67.5
MD08G1035900 Malus domestica HOM05D000055 ORTHO05D001675 3.4e-06 55.5 40 62.5
Duzib128G0746 Durio zibethinus HOM05D000055 ORTHO05D001675 5.8e-06 54.7 40 62.5
VMungo0331G1445 Vigna mungo HOM05D000055 ORTHO05D001675 5.8e-06 54.7 40 65.0
Zm00001eb012000 Zea mays HOM05D000055 ORTHO05D001675 7.6e-06 54.3 40 57.5
BraA03t11329Z Brassica rapa HOM05D000055 ORTHO05D001675 1.0e-05 53.9 48 58.3


User provided reference genes

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