Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold112G31671 Striga asiatica HOM05D002801 ORTHO05D003002 2.6e-112 408.7 198 100.0
CARHR131420 Cardamine hirsuta HOM05D002801 ORTHO05D003002 2.4e-09 66.6 71 52.1
Nitab4.5_0002632g0070 Nicotiana tabacum HOM05D002801 ORTHO05D003002 4.1e-09 65.9 71 50.7
THA.LOC104806477 Tarenaya hassleriana HOM05D002801 ORTHO05D003002 7.0e-09 65.1 82 50.0
Aa31LG5G22170 Aethionema arabicum HOM05D002801 ORTHO05D003002 9.2e-09 64.7 101 43.6
HanXRQChr02g0053371 Helianthus annuus HOM05D002801 ORTHO05D003002 9.2e-09 64.7 102 43.1
HanXRQChr01g0027631 Helianthus annuus HOM05D002801 ORTHO05D003002 1.2e-08 64.3 100 43.0
Lsat_1_v5_gn_6_11100 Lactuca sativa HOM05D002801 ORTHO05D003002 1.2e-08 64.3 101 42.6
PSO801G0542 Papaver somniferum HOM05D002801 ORTHO05D003002 1.2e-08 64.3 71 56.3
Peaxi162Scf00701g00031 Petunia axillaris HOM05D002801 ORTHO05D003002 1.2e-08 64.3 71 49.3
AL4G33200 Arabidopsis lyrata HOM05D002801 ORTHO05D003002 1.6e-08 63.9 42 76.2
BcaB01g03805 Brassica carinata HOM05D002801 ORTHO05D003002 1.6e-08 63.9 77 51.9
Thhalv10016298m.g Eutrema salsugineum HOM05D002801 ORTHO05D003002 1.6e-08 63.9 42 76.2
Sp4g19240 Schrenkiella parvula HOM05D002801 ORTHO05D003002 1.6e-08 63.9 42 76.2
PSO339G6183 Papaver somniferum HOM05D002801 ORTHO05D003002 2.0e-08 63.5 71 56.3
Actinidia08779 Actinidia chinensis HOM05D002801 ORTHO05D003002 2.7e-08 63.2 99 43.4
AT2G36960 Arabidopsis thaliana HOM05D002801 ORTHO05D003002 2.7e-08 63.2 42 76.2
BcaB02g09317 Brassica carinata HOM05D002801 ORTHO05D003002 2.7e-08 63.2 42 76.2
BcaC02g11818 Brassica carinata HOM05D002801 ORTHO05D003002 2.7e-08 63.2 42 76.2
A05p08890 Brassica napus HOM05D002801 ORTHO05D003002 2.7e-08 63.2 42 76.2
C04p11020 Brassica napus HOM05D002801 ORTHO05D003002 2.7e-08 63.2 42 76.2
BolC4t22748H Brassica oleracea HOM05D002801 ORTHO05D003002 2.7e-08 63.2 42 76.2
BraA05t19854Z Brassica rapa HOM05D002801 ORTHO05D003002 2.7e-08 63.2 42 76.2
Cpa.g.sc56.26 Carica papaya HOM05D002801 ORTHO05D003002 2.7e-08 63.2 100 42.0
Migut.L01697 Erythranthe guttata HOM05D002801 ORTHO05D003002 2.7e-08 63.2 103 41.7
HanXRQChr17g0568771 Helianthus annuus HOM05D002801 ORTHO05D003002 2.7e-08 63.2 71 47.9
Psat4g113080 Pisum sativum HOM05D002801 ORTHO05D003002 2.7e-08 63.2 102 41.2
ECA248G2038 Erigeron canadensis HOM05D002801 ORTHO05D003002 3.5e-08 62.8 100 41.0
Medtr8g069965 Medicago truncatula HOM05D002801 ORTHO05D003002 4.5e-08 62.4 42 73.8
Solyc09g008100.4 Solanum lycopersicum HOM05D002801 ORTHO05D003002 4.5e-08 62.4 97 43.3
Sopen09g002910 Solanum pennellii HOM05D002801 ORTHO05D003002 4.5e-08 62.4 97 43.3
Carub.0004s1880 Capsella rubella HOM05D002801 ORTHO05D003002 5.9e-08 62.0 42 73.8
Dinv35783 Davidia involucrata HOM05D002801 ORTHO05D003002 5.9e-08 62.0 99 41.4
Nitab4.5_0003861g0040 Nicotiana tabacum HOM05D002801 ORTHO05D003002 5.9e-08 62.0 42 73.8
TPR.G24800 Trifolium pratense HOM05D002801 ORTHO05D003002 5.9e-08 62.0 42 73.8
CAN.G900.43 Capsicum annuum HOM05D002801 ORTHO05D003002 7.7e-08 61.6 71 47.9
Ca_22518_v3 Cicer arietinum L. HOM05D002801 ORTHO05D003002 7.7e-08 61.6 102 41.2
Glyma.02G048100 Glycine max HOM05D002801 ORTHO05D003002 7.7e-08 61.6 102 41.2
Glyma.16G128300 Glycine max HOM05D002801 ORTHO05D003002 7.7e-08 61.6 102 41.2
Phvul.003G261500 Phaseolus vulgaris HOM05D002801 ORTHO05D003002 7.7e-08 61.6 102 41.2
Rhsim03G0092600 Rhododendron simsii HOM05D002801 ORTHO05D003002 7.7e-08 61.6 99 41.4
SGA_v2.0_scaffold35G14132 Striga asiatica HOM05D002801 ORTHO05D003002 7.7e-08 61.6 71 47.9
vmacro07286 Vaccinium macrocarpon HOM05D002801 ORTHO05D003002 7.7e-08 61.6 99 41.4
VMungo0251G2590 Vigna mungo HOM05D002801 ORTHO05D003002 7.7e-08 61.6 102 41.2
Gohir.A04G072200 Gossypium hirsutum HOM05D002801 ORTHO05D003002 1.0e-07 61.2 71 47.9
Gohir.D04G110700 Gossypium hirsutum HOM05D002801 ORTHO05D003002 1.0e-07 61.2 71 47.9
Gorai.009G414900 Gossypium raimondii HOM05D002801 ORTHO05D003002 1.0e-07 61.2 71 47.9
Lalb_Chr09g0333141 Lupinus albus HOM05D002801 ORTHO05D003002 1.0e-07 61.2 102 40.2
PGR004G0677 Punica granatum HOM05D002801 ORTHO05D003002 1.0e-07 61.2 101 41.6
SalBow5G1472 Salvia bowleyana HOM05D002801 ORTHO05D003002 1.0e-07 61.2 71 47.9
SalBow5G4156 Salvia bowleyana HOM05D002801 ORTHO05D003002 1.0e-07 61.2 71 47.9
arahy.Tifrunner.gnm1.ann1.IM29MK Arachis hypogaea HOM05D002801 ORTHO05D003002 1.3e-07 60.8 102 41.2
arahy.Tifrunner.gnm1.ann1.KV6AVL Arachis hypogaea HOM05D002801 ORTHO05D003002 1.3e-07 60.8 102 41.2
MSTRG.26694 Avicennia marina HOM05D002801 ORTHO05D003002 1.3e-07 60.8 132 37.9
Hma1.2p1_0205F.1_g087110 Hydrangea macrophylla HOM05D002801 ORTHO05D003002 1.3e-07 60.8 100 41.0
EL10Ac7g16619 Beta vulgaris HOM05D002801 ORTHO05D003002 1.7e-07 60.5 110 35.5
Eucgr.A01690 Eucalyptus grandis HOM05D002801 ORTHO05D003002 1.7e-07 60.5 101 41.6
Lj2A116G73 Lonicera japonica HOM05D002801 ORTHO05D003002 1.7e-07 60.5 95 43.2
Lj4g0021696 Lotus japonicus HOM05D002801 ORTHO05D003002 1.7e-07 60.5 102 41.2
Potri.016G091700 Populus trichocarpa HOM05D002801 ORTHO05D003002 1.7e-07 60.5 101 41.6
TAR633G0396 Trochodendron aralioides HOM05D002801 ORTHO05D003002 1.7e-07 60.5 114 39.5
Cc04_g12180 Coffea canephora HOM05D002801 ORTHO05D003002 2.3e-07 60.1 126 38.9
Nn2g13773 Nelumbo nucifera HOM05D002801 ORTHO05D003002 2.3e-07 60.1 70 47.1
Atru.chr8.1823 Acer truncatum HOM05D002801 ORTHO05D003002 2.9e-07 59.7 71 47.9
Ciclev10011099m.g Citrus clementina HOM05D002801 ORTHO05D003002 2.9e-07 59.7 71 47.9
Duzib128G1402 Durio zibethinus HOM05D002801 ORTHO05D003002 2.9e-07 59.7 71 47.9
Manes.08G009700 Manihot esculenta HOM05D002801 ORTHO05D003002 2.9e-07 59.7 100 41.0
Oeu040375.1 Olea europaea HOM05D002801 ORTHO05D003002 2.9e-07 59.7 99 41.4
CANSAT80G2908 Cannabis sativa HOM05D002801 ORTHO05D003002 3.8e-07 59.3 71 47.9
Duzib093G0446 Durio zibethinus HOM05D002801 ORTHO05D003002 3.8e-07 59.3 101 40.6
ECA238G4143 Erigeron canadensis HOM05D002801 ORTHO05D003002 3.8e-07 59.3 42 71.4
MD12G1113900 Malus domestica HOM05D002801 ORTHO05D003002 3.8e-07 59.3 71 46.5
QL07p043643 Quercus lobata HOM05D002801 ORTHO05D003002 3.8e-07 59.3 100 41.0
RcHm_v2.0_Chr3g0470121 Rosa chinensis HOM05D002801 ORTHO05D003002 3.8e-07 59.3 71 47.9
TWI74G0434 Tripterygium wilfordii HOM05D002801 ORTHO05D003002 3.8e-07 59.3 100 41.0
GSVIVG01025725001 Vitis vinifera HOM05D002801 ORTHO05D003002 3.8e-07 59.3 127 37.8
ATR0115G018 Amborella trichopoda HOM05D002801 ORTHO05D003002 5.0e-07 58.9 70 45.7
CiPaw.10G130300 Carya illinoinensis HOM05D002801 ORTHO05D003002 5.0e-07 58.9 42 71.4
CiPaw.10G130400 Carya illinoinensis HOM05D002801 ORTHO05D003002 5.0e-07 58.9 100 41.0
Gohir.A01G214500 Gossypium hirsutum HOM05D002801 ORTHO05D003002 5.0e-07 58.9 100 41.0
Gohir.D01G203000 Gossypium hirsutum HOM05D002801 ORTHO05D003002 5.0e-07 58.9 100 41.0
Lalb_Chr16g0391251 Lupinus albus HOM05D002801 ORTHO05D003002 5.0e-07 58.9 102 39.2
Manes.09G067140 Manihot esculenta HOM05D002801 ORTHO05D003002 5.0e-07 58.9 100 41.0
Potri.006G125400 Populus trichocarpa HOM05D002801 ORTHO05D003002 5.0e-07 58.9 42 71.4
Sc02g0001680 Simmondsia chinensis HOM05D002801 ORTHO05D003002 5.0e-07 58.9 101 38.6
Thecc.05G064900 Theobroma cacao HOM05D002801 ORTHO05D003002 5.0e-07 58.9 100 41.0
TWI53G0691 Tripterygium wilfordii HOM05D002801 ORTHO05D003002 5.0e-07 58.9 42 71.4
CDE02G0847 Ceratophyllum demersum HOM05D002801 ORTHO05D003002 6.6e-07 58.5 42 71.4
CDE06G1853 Ceratophyllum demersum HOM05D002801 ORTHO05D003002 6.6e-07 58.5 42 71.4
AUR62026908 Chenopodium quinoa HOM05D002801 ORTHO05D003002 6.6e-07 58.5 71 46.5
DCAR_017687 Daucus carota HOM05D002801 ORTHO05D003002 6.6e-07 58.5 71 46.5
Dinv37307 Davidia involucrata HOM05D002801 ORTHO05D003002 6.6e-07 58.5 100 40.0
Sabra06G0099000 Salix brachista HOM05D002801 ORTHO05D003002 6.6e-07 58.5 42 69.0
Aqoxy1G00134 Aquilegia oxysepala HOM05D002801 ORTHO05D003002 8.6e-07 58.2 71 46.5
Cfa017598 Carpinus fangiana HOM05D002801 ORTHO05D003002 8.6e-07 58.2 71 46.5
Haze_20554 Corylus avellana HOM05D002801 ORTHO05D003002 8.6e-07 58.2 71 46.5
FvH4_6g16260 Fragaria vesca HOM05D002801 ORTHO05D003002 8.6e-07 58.2 71 46.5
FAN02G3555 Fragaria x ananassa HOM05D002801 ORTHO05D003002 8.6e-07 58.2 71 46.5
FAN05G5473 Fragaria x ananassa HOM05D002801 ORTHO05D003002 8.6e-07 58.2 71 46.5
FAN09G1888 Fragaria x ananassa HOM05D002801 ORTHO05D003002 8.6e-07 58.2 71 46.5
FAN14G2570 Fragaria x ananassa HOM05D002801 ORTHO05D003002 8.6e-07 58.2 71 46.5
Prupe.6G232900 Prunus persica HOM05D002801 ORTHO05D003002 8.6e-07 58.2 71 46.5
TAR636G1313 Trochodendron aralioides HOM05D002801 ORTHO05D003002 8.6e-07 58.2 71 46.5
Os03g0773100 Oryza sativa ssp. japonica HOM05D002801 ORTHO05D003002 1.1e-06 57.8 42 69.0
HPP92_012371 Vanilla planifolia HOM05D002801 ORTHO05D003002 1.1e-06 57.8 99 40.4
Zm00001eb399030 Zea mays HOM05D002801 ORTHO05D003002 1.1e-06 57.8 42 69.0
CSS0037052 Camellia sinensis var. sinensis HOM05D002801 ORTHO05D003002 1.5e-06 57.4 42 69.0
ClCG10G020190 Citrullus lanatus HOM05D002801 ORTHO05D003002 1.5e-06 57.4 102 39.2
MELO3C009350.2 Cucumis melo HOM05D002801 ORTHO05D003002 1.5e-06 57.4 102 39.2
CsaV3_3G035910 Cucumis sativus L. HOM05D002801 ORTHO05D003002 1.5e-06 57.4 102 39.2
MBI11_g28438_MAGBIO Magnolia biondii HOM05D002801 ORTHO05D003002 1.5e-06 57.4 102 43.1
Sabra16G0097400 Salix brachista HOM05D002801 ORTHO05D009785 1.5e-06 57.4 101 39.6
Sed0003779 Sechium edule HOM05D002801 ORTHO05D003002 1.5e-06 57.4 102 39.2
Sed0017434 Sechium edule HOM05D002801 ORTHO05D003002 1.5e-06 57.4 102 39.2
CBR_g26407 Chara braunii HOM05D002801 ORTHO05D003002 1.9e-06 57.0 42 66.7
Nn2g11575 Nelumbo nucifera HOM05D002801 ORTHO05D003002 1.9e-06 57.0 42 69.0
Os03g0241100 Oryza sativa ssp. japonica HOM05D002801 ORTHO05D003002 1.9e-06 57.0 42 69.0
Zm00001eb058920 Zea mays HOM05D002801 ORTHO05D003002 3.3e-06 56.2 73 47.9
MBI19_g35569_MAGBIO Magnolia biondii HOM05D002801 ORTHO05D003002 4.3e-06 55.8 70 51.4


User provided reference genes

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