Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 0.0e+00 1243.8 628 100.0
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 1.7e-274 949.1 627 79.6
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 1.7e-229 799.7 638 67.6
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 6.7e-215 751.1 637 64.1
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 6.7e-215 751.1 637 64.2
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 5.0e-210 734.9 633 63.2
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 2.3e-183 646.4 699 53.6
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 9.9e-166 587.8 639 55.2
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 9.2e-164 581.3 646 53.3
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 5.8e-158 562.0 644 51.4
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.3e-154 550.8 667 50.1
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 1.3e-154 550.8 642 50.8
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 1.1e-153 547.7 642 50.9
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 5.6e-153 545.4 648 50.6
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 4.9e-149 532.3 647 51.5
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 4.9e-149 532.3 642 50.2
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 1.9e-148 530.4 639 50.5
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 1.3e-146 524.2 648 49.7
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 1.7e-146 523.9 639 49.1
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 3.0e-146 523.1 653 49.2
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 3.0e-146 523.1 645 48.8
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 1.3e-141 507.7 644 47.4
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 3.2e-140 503.1 642 48.8
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 1.8e-138 497.3 646 48.6
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 2.3e-138 496.9 646 48.5
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 3.9e-138 496.1 647 47.6
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 6.7e-138 495.4 637 49.0
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 8.7e-138 495.0 625 50.6
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 1.9e-137 493.8 623 47.5
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 7.4e-137 491.9 654 46.8
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 4.8e-136 489.2 642 48.4
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 1.5e-134 484.2 637 48.2
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 2.6e-134 483.4 625 47.7
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 9.9e-134 481.5 624 47.6
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.2e-133 480.3 621 48.1
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.1e-132 478.0 637 47.9
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 3.2e-132 476.5 634 47.9
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 4.2e-132 476.1 671 44.7
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 9.3e-132 474.9 643 46.8
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 9.3e-132 474.9 655 45.8
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.2e-131 474.6 621 47.7
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 1.2e-131 474.6 621 48.0
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 3.3e-129 466.5 642 46.0
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 5.6e-129 465.7 638 46.2
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 9.6e-129 464.9 631 45.8
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 1.6e-128 464.2 643 44.6
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 2.1e-128 463.8 607 46.5
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 4.8e-128 462.6 648 45.2
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 3.1e-127 459.9 649 46.7
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 5.3e-127 459.1 649 46.5
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 9.0e-127 458.4 648 44.8
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 1.5e-126 457.6 647 45.3
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 1.5e-126 457.6 641 44.0
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 3.4e-126 456.4 627 45.9
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 3.4e-126 456.4 644 45.2
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 3.4e-126 456.4 656 44.7
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 1.7e-125 454.1 655 46.0
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 1.7e-125 454.1 644 44.9
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 1.4e-124 451.1 703 42.0
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 3.2e-124 449.9 640 44.7
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 7.1e-124 448.7 647 46.1
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 2.1e-123 447.2 624 47.3
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 2.1e-123 447.2 651 43.9
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 6.0e-123 445.7 647 45.4
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 3.9e-122 443.0 644 44.1
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 5.1e-122 442.6 624 43.9
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 6.7e-122 442.2 613 43.7
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 1.1e-121 441.4 644 44.9
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 7.4e-121 438.7 653 44.0
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 7.4e-121 438.7 613 45.8
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 9.7e-121 438.3 646 44.4
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 2.2e-120 437.2 675 42.1
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 3.7e-120 436.4 645 43.7
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 3.7e-120 436.4 656 45.3
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 4.8e-120 436.0 609 46.0
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 6.3e-120 435.6 662 43.4
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 6.3e-120 435.6 640 44.5
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 1.4e-119 434.5 632 44.6
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 1.4e-119 434.5 644 43.0
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 1.8e-119 434.1 635 43.8
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 4.1e-119 433.0 516 52.7
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 5.9e-118 429.1 624 43.6
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 7.7e-118 428.7 641 43.5
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.0e-117 428.3 621 43.6
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 3.8e-117 426.4 636 44.2
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 3.8e-117 426.4 639 44.1
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.4e-116 424.5 646 43.0
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 1.9e-116 424.1 637 42.9
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 1.9e-116 424.1 635 42.7
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 7.9e-115 418.7 625 42.2
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.4e-114 417.9 647 42.5
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 3.9e-114 416.4 676 41.6
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 3.9e-114 416.4 676 40.8
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 8.2e-112 408.7 624 41.3
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 1.4e-111 407.9 638 42.0
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.8e-111 407.5 657 41.2
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 1.8e-111 407.5 611 41.6
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 4.1e-111 406.4 631 41.0
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 9.1e-111 405.2 606 42.7
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 2.0e-110 404.1 607 41.7
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 2.9e-109 400.2 603 45.4
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 5.0e-109 399.4 639 41.6
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 1.2e-107 394.8 639 41.3
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 2.1e-107 394.0 623 43.2
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 2.7e-107 393.7 617 40.8
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 3.6e-107 393.3 612 41.0
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 3.6e-107 393.3 630 40.6
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.0e-106 391.7 645 40.3
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 1.1e-105 388.3 640 40.5
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 2.0e-105 387.5 619 40.7
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 5.7e-105 386.0 608 40.8
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 9.7e-105 385.2 618 40.5
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 1.3e-104 384.8 608 40.6
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 1.3e-104 384.8 629 40.9
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 1.3e-104 384.8 627 40.5
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 1.7e-104 384.4 574 43.2
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 1.1e-103 381.7 397 55.4
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 1.8e-103 380.9 606 40.4
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 4.1e-103 379.8 549 42.4
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 3.5e-102 376.7 643 40.3
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 5.9e-102 375.9 624 40.4
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 2.2e-101 374.0 621 40.6
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 5.0e-101 372.9 518 46.3
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 1.0e-98 365.2 555 42.9
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 2.0e-94 350.9 413 50.1
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 8.0e-91 339.0 325 56.3
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 5.3e-87 326.2 343 54.8
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.2e-86 325.1 503 44.9
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.1e-84 318.5 250 62.8
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 7.2e-84 315.8 575 39.1
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 1.2e-81 308.5 609 38.3
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 9.5e-76 288.9 240 61.7
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 1.8e-74 284.6 247 59.9
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 5.4e-71 273.1 387 47.3
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 1.7e-69 268.1 390 45.6
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 1.5e-68 265.0 429 38.5
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.2e-65 255.4 379 45.4
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 1.1e-60 238.8 496 34.3
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 4.3e-60 236.9 508 36.2
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 1.2e-57 228.8 359 38.7
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 4.4e-57 226.9 640 31.6
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 2.2e-56 224.6 403 39.7
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 8.6e-53 212.6 205 53.2
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 1.8e-50 204.9 257 50.2
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 7.6e-49 199.5 586 30.2
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.6e-46 191.8 178 58.4
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.6e-46 191.8 335 40.6
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.6e-41 174.5 394 37.8
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 3.4e-41 174.1 233 42.9
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 8.7e-37 159.5 354 33.6
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.7e-32 145.2 95 73.7
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 3.3e-28 131.0 257 39.7
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 2.2e-24 118.2 262 38.5
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 7.1e-23 113.2 267 38.6
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 2.1e-22 111.7 184 39.1
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.1e-22 111.7 218 36.7
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 6.0e-22 110.2 111 54.1
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 2.1e-19 101.7 206 42.2
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 1.4e-18 99.0 236 33.5
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 2.6e-17 94.7 244 35.2
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 5.8e-17 93.6 173 37.6
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.3e-16 92.4 95 47.4
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 3.8e-16 90.9 248 33.5
Cre03.g197600 Chlamydomonas reinhardtii HOM05D003892 ORTHO05D004522 2.5e-15 88.2 421 24.5
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 7.1e-15 86.7 83 53.0
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 3.1e-10 71.2 91 44.0
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 5.8e-09 67.0 121 37.2
GSVIVG01022517001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.7e-08 65.5 74 45.9
CSS0023890 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 3.8e-08 64.3 44 65.9
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 5.0e-08 63.9 103 40.8
Glyma.10G214400 Glycine max HOM05D003892 ORTHO05D004522 9.3e-07 59.7 42 69.0
Nitab4.5_0000123g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 3.5e-06 57.8 65 53.8


User provided reference genes

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