Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 2.9e-94 348.6 179 100.0
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 1.5e-87 326.2 179 93.3
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 9.0e-72 273.9 179 79.3
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 1.6e-68 263.1 174 79.3
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 1.6e-68 263.1 180 76.1
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 5.6e-66 254.6 185 76.2
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 5.6e-66 254.6 185 76.2
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 4.5e-63 245.0 184 73.4
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.8e-62 241.9 181 74.0
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 6.5e-62 241.1 178 72.5
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 1.4e-61 240.0 184 71.7
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.5e-61 239.2 181 73.5
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 5.5e-61 238.0 173 72.3
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 9.3e-61 237.3 176 71.6
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 1.2e-60 236.9 176 72.7
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 6.0e-60 234.6 194 66.5
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 1.0e-59 233.8 183 67.8
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 1.0e-59 233.8 175 73.7
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.8e-59 233.0 178 70.8
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 1.8e-59 233.0 178 70.8
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.8e-59 233.0 181 71.8
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 3.9e-59 231.9 180 70.6
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 6.7e-59 231.1 186 69.4
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 6.7e-59 231.1 193 68.9
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 8.7e-59 230.7 171 73.1
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.1e-58 230.3 179 69.8
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 1.9e-58 229.6 190 67.4
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.9e-58 229.6 173 71.7
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 4.8e-57 224.9 186 63.4
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 4.8e-57 224.9 176 67.6
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 4.8e-57 224.9 176 67.6
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 4.8e-57 224.9 176 67.6
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 6.2e-57 224.6 187 66.8
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 1.1e-56 223.8 177 70.1
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 1.4e-56 223.4 153 75.2
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 2.4e-56 222.6 176 71.0
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 1.2e-55 220.3 187 63.6
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 1.5e-55 219.9 176 65.3
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 1.5e-55 219.9 175 66.3
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 2.0e-55 219.5 182 62.6
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 2.0e-55 219.5 182 64.8
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 3.4e-55 218.8 185 64.9
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 4.5e-55 218.4 175 66.9
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 4.5e-55 218.4 173 68.8
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 4.5e-55 218.4 171 66.7
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 7.6e-55 217.6 181 64.1
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 1.3e-54 216.9 178 68.0
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 1.3e-54 216.9 173 67.6
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 2.2e-54 216.1 189 66.1
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 2.2e-54 216.1 177 63.8
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 2.2e-54 216.1 203 63.1
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 2.2e-54 216.1 186 64.0
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 5.0e-54 214.9 133 80.5
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.1e-53 213.8 179 65.9
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 1.4e-53 213.4 173 66.5
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 5.5e-53 211.5 173 61.8
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 5.5e-53 211.5 176 67.0
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 5.5e-53 211.5 168 70.2
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 7.1e-53 211.1 173 65.3
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 9.3e-53 210.7 176 67.6
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 2.7e-52 209.1 176 64.8
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 3.5e-52 208.8 179 63.1
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 4.6e-52 208.4 174 64.4
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 7.9e-52 207.6 194 61.9
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 7.9e-52 207.6 176 64.2
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 7.9e-52 207.6 175 66.3
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 1.0e-51 207.2 188 60.1
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.3e-51 206.1 174 64.9
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 2.3e-51 206.1 177 65.0
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 3.0e-51 205.7 183 62.8
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 3.0e-51 205.7 173 65.3
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 5.1e-51 204.9 185 63.2
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 6.7e-51 204.5 184 63.6
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 6.7e-51 204.5 184 63.6
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 6.7e-51 204.5 184 63.6
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 8.7e-51 204.1 187 64.2
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 1.5e-50 203.4 187 62.0
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 1.5e-50 203.4 187 62.0
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 1.5e-50 203.4 180 66.1
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 1.5e-50 203.4 174 61.5
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 1.5e-50 203.4 181 63.0
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.9e-50 203.0 180 65.6
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 1.9e-50 203.0 180 64.4
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 3.3e-50 202.2 181 62.4
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 7.4e-50 201.1 148 72.3
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.3e-49 200.3 176 63.1
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 2.2e-49 199.5 186 61.3
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 2.8e-49 199.1 175 64.0
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 3.7e-49 198.7 182 61.5
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 4.8e-49 198.4 176 62.5
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 4.8e-49 198.4 176 62.5
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 4.8e-49 198.4 176 62.5
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 1.8e-48 196.4 190 57.4
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 3.1e-48 195.7 182 60.4
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 6.9e-48 194.5 189 60.3
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 2.6e-47 192.6 162 63.0
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 3.4e-47 192.2 178 61.8
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.5e-47 191.8 179 61.5
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 1.3e-46 190.3 186 58.1
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 2.2e-46 189.5 187 56.1
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 3.8e-46 188.7 185 58.9
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 3.8e-46 188.7 149 66.4
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 5.0e-46 188.3 157 66.9
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 8.5e-46 187.6 120 77.5
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 1.1e-45 187.2 181 59.1
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 1.1e-45 187.2 181 59.1
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 7.2e-45 184.5 173 54.9
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 7.2e-45 184.5 183 56.8
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 1.6e-44 183.3 188 55.9
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 1.0e-43 180.6 173 59.5
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 1.4e-43 180.3 154 65.6
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 3.3e-42 175.6 184 54.9
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 1.7e-41 173.3 140 71.4
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 1.1e-40 170.6 102 82.4
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.5e-39 166.8 140 67.9
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 3.8e-38 162.2 176 55.1
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 4.2e-37 158.7 186 49.5
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 4.2e-37 158.7 148 58.1
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 7.2e-37 157.9 142 62.0
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 1.2e-36 157.1 188 47.9
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 3.6e-36 155.6 124 62.9
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 1.8e-35 153.3 91 80.2
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 7.4e-34 147.9 106 67.9
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 1.5e-31 140.2 102 65.7
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 2.2e-30 136.3 103 67.0
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.5e-29 133.7 124 54.8
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 1.9e-29 133.3 101 65.3
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 4.2e-29 132.1 101 64.4
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 9.4e-29 131.0 109 59.6
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 2.7e-28 129.4 90 72.2
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 1.0e-27 127.5 106 64.2
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 3.3e-26 122.5 127 50.4
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 2.8e-25 119.4 102 60.8
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 8.2e-25 117.9 103 59.2
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 3.5e-23 112.5 175 44.6
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 4.5e-23 112.1 110 50.9
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 5.9e-23 111.7 115 52.2
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 6.5e-22 108.2 110 50.9
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 1.5e-21 107.1 103 55.3
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 1.9e-21 106.7 98 54.1
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.5e-21 106.3 103 51.5
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.0e-19 100.9 88 63.6
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 4.0e-19 99.0 99 51.5
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 2.0e-18 96.7 113 49.6
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 7.5e-18 94.7 64 75.0
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 1.3e-17 94.0 71 60.6
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.7e-17 92.4 67 70.1
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 8.3e-17 91.3 127 47.2
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 8.3e-17 91.3 98 43.9
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 4.1e-16 89.0 101 47.5
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.2e-15 87.4 94 50.0
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 1.1e-13 80.9 130 36.2


User provided reference genes

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