Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 0.0e+00 1152.5 747 100.0
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 2.1e-170 603.6 754 56.0
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 6.2e-151 538.9 566 58.8
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 2.4e-150 537.0 771 52.8
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 4.0e-150 536.2 571 57.1
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 1.2e-149 534.6 587 60.0
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 7.6e-149 531.9 754 53.1
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 7.6e-149 531.9 576 61.1
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 2.2e-148 530.4 568 61.3
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 1.4e-147 527.7 574 59.1
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 1.9e-147 527.3 567 61.2
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 1.6e-146 524.2 763 51.6
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 2.7e-146 523.5 570 56.7
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 2.3e-145 520.4 746 51.5
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 5.7e-144 515.8 571 59.4
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 8.2e-143 511.9 761 53.0
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 8.2e-143 511.9 746 52.1
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 1.1e-142 511.5 725 53.5
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 2.4e-142 510.4 574 58.7
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 1.2e-141 508.1 766 50.1
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 2.0e-141 507.3 575 56.9
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 2.9e-140 503.4 574 57.5
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 6.5e-140 502.3 576 55.4
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 1.4e-139 501.1 571 53.4
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 2.5e-139 500.4 560 53.8
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.2e-138 498.0 661 50.5
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 2.1e-138 497.3 588 56.3
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 2.0e-136 490.7 560 53.6
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 3.3e-136 490.0 746 50.1
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 3.3e-136 490.0 746 50.1
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 3.7e-135 486.5 735 50.6
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 4.8e-135 486.1 776 46.0
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 2.4e-134 483.8 625 52.8
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 1.2e-133 481.5 755 50.1
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 2.0e-133 480.7 574 54.9
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 6.5e-132 475.7 777 53.5
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 8.5e-132 475.3 577 52.7
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 1.4e-131 474.6 566 54.8
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 1.4e-131 474.6 582 55.7
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 2.5e-131 473.8 757 48.2
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 2.1e-130 470.7 741 51.1
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 4.7e-130 469.5 741 48.6
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 7.9e-130 468.8 675 49.6
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 1.1e-128 464.9 755 49.4
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 1.5e-128 464.5 578 55.4
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 7.4e-128 462.2 565 55.2
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 2.2e-127 460.7 567 55.6
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 9.1e-126 455.3 563 54.4
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 6.5e-124 449.1 509 56.2
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 2.5e-123 447.2 564 53.2
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 7.2e-123 445.7 589 49.9
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 4.7e-122 443.0 572 53.5
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 1.0e-121 441.8 568 55.3
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 2.3e-121 440.7 598 50.8
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 5.7e-120 436.0 761 53.0
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 2.4e-118 430.6 587 51.4
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 4.1e-118 429.9 569 53.8
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 1.6e-117 427.9 571 52.7
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 4.5e-117 426.4 690 51.4
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 5.9e-117 426.0 564 52.8
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 5.0e-116 422.9 564 52.7
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 8.5e-116 422.2 553 50.1
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 7.2e-115 419.1 501 52.3
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 7.2e-115 419.1 525 56.4
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 4.7e-114 416.4 560 50.0
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 1.0e-113 415.2 553 52.3
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.4e-113 414.8 422 65.6
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 1.8e-113 414.5 552 53.3
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.5e-112 411.4 716 51.1
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 1.5e-112 411.4 564 47.3
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 9.7e-112 408.7 749 47.4
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 1.3e-111 408.3 747 47.3
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 2.8e-111 407.1 747 43.1
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 9.1e-110 402.1 563 49.2
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 2.0e-109 401.0 587 51.6
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 5.9e-109 399.4 348 64.4
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 1.0e-108 398.7 568 47.5
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 2.9e-108 397.1 740 46.6
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 1.1e-107 395.2 515 53.0
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 2.5e-107 394.0 556 49.5
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 7.2e-107 392.5 550 48.7
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 1.2e-106 391.7 584 49.3
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 1.2e-101 375.2 763 44.2
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 1.9e-99 367.9 569 48.0
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 1.6e-98 364.8 556 51.1
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 3.6e-98 363.6 574 49.3
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 1.0e-97 362.1 587 46.0
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 9.2e-94 349.0 578 46.7
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 2.3e-92 344.4 577 46.3
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 8.6e-92 342.4 579 43.9
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 5.6e-91 339.7 580 44.8
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 5.6e-91 339.7 482 49.6
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 5.2e-89 333.2 564 44.5
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 6.8e-89 332.8 581 45.4
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 9.8e-88 328.9 549 45.2
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 9.2e-86 322.4 584 43.7
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 3.5e-85 320.5 380 61.1
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 4.3e-83 313.5 596 39.4
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 3.1e-81 307.4 530 41.5
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 9.8e-80 302.4 746 42.0
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 1.3e-79 302.0 599 39.1
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 1.9e-75 288.1 561 37.3
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 1.1e-73 282.3 522 40.0
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 3.4e-72 277.3 481 42.4
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 4.4e-72 276.9 501 38.7
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.9e-70 271.6 588 36.4
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 5.4e-70 270.0 495 36.8
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 3.6e-66 257.3 427 45.0
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 1.6e-61 241.9 198 66.7
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 3.0e-60 237.7 612 34.3
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 9.6e-51 206.1 188 56.9
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 8.1e-50 203.0 282 49.6
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 3.1e-49 201.1 246 44.7
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 2.1e-45 188.3 209 50.2
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 3.5e-45 187.6 259 54.8
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 7.9e-45 186.4 669 30.3
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 1.5e-40 172.2 260 50.4
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 1.0e-39 169.5 564 32.3
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 7.1e-38 163.3 577 28.8
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 6.7e-36 156.8 465 33.5
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 1.5e-35 155.6 244 43.9
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 4.5e-32 144.1 672 27.7
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 8.4e-31 139.8 274 45.3
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 1.3e-28 132.5 250 36.4
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 2.2e-26 125.2 111 55.9
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 5.3e-25 120.6 120 53.3
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 5.9e-24 117.1 300 31.0
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 2.2e-23 115.2 99 61.6
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 5.0e-23 114.0 121 52.9
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 3.2e-22 111.3 138 49.3
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 3.3e-19 101.3 98 49.0
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.7e-15 89.0 325 29.5
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 6.5e-15 87.0 195 36.4
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 1.6e-13 82.4 173 38.7
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 3.0e-12 78.2 103 44.7
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 3.1e-09 68.2 155 31.0
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 3.5e-08 64.7 58 56.9
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 2.2e-07 62.0 140 29.3
C03p39890 Brassica napus HOM05D004723 ORTHO05D019910 2.5e-06 58.5 72 51.4


User provided reference genes

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