Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 4.0e-84 314.7 155 100.0
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 8.1e-37 157.5 144 58.3
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 1.2e-35 153.7 161 54.0
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 9.9e-35 150.6 139 58.3
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 1.7e-34 149.8 161 51.6
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 9.3e-33 144.1 163 55.2
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 3.5e-32 142.1 140 54.3
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 4.6e-32 141.7 154 55.8
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.8e-31 139.8 148 54.1
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.0e-31 139.0 150 52.7
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.9e-31 138.7 150 52.0
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 5.1e-31 138.3 150 52.7
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 8.7e-31 137.5 150 52.7
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 7.4e-30 134.4 143 53.1
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 9.6e-30 134.0 141 53.9
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 9.6e-30 134.0 142 54.2
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 9.6e-30 134.0 154 50.6
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 1.6e-29 133.3 132 55.3
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 2.8e-29 132.5 145 52.4
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 1.4e-28 130.2 159 52.2
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 1.4e-28 130.2 158 50.6
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 1.8e-28 129.8 155 51.6
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.5e-27 126.7 140 52.1
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.5e-27 126.7 140 52.1
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 2.6e-27 125.9 156 48.7
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 2.6e-27 125.9 154 52.6
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 5.8e-27 124.8 168 46.4
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 7.6e-27 124.4 147 48.3
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.3e-26 123.6 139 53.2
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 1.3e-26 123.6 153 49.0
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 1.7e-26 123.2 146 53.4
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 2.2e-26 122.9 149 49.0
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 4.9e-26 121.7 133 48.9
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 6.5e-26 121.3 155 50.3
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 6.5e-26 121.3 145 51.0
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 6.5e-26 121.3 130 53.8
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 8.4e-26 120.9 154 51.3
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 1.1e-25 120.6 145 51.0
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 1.1e-25 120.6 145 51.0
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 1.1e-25 120.6 136 53.7
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 1.4e-25 120.2 141 52.5
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 1.9e-25 119.8 167 42.5
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 4.2e-25 118.6 152 50.0
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 5.5e-25 118.2 146 47.3
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 5.5e-25 118.2 154 46.8
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 5.5e-25 118.2 132 52.3
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 7.1e-25 117.9 155 47.1
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 2.7e-24 115.9 142 50.7
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 3.5e-24 115.5 157 45.9
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 3.5e-24 115.5 144 47.2
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 4.6e-24 115.2 156 44.9
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 6.0e-24 114.8 125 52.0
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 7.9e-24 114.4 163 48.5
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.0e-23 114.0 154 46.1
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.0e-23 114.0 154 46.1
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 1.3e-23 113.6 145 46.9
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 1.3e-23 113.6 145 46.9
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.3e-23 113.6 167 42.5
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.3e-23 113.6 157 47.1
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.3e-23 113.6 157 47.1
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.3e-23 113.6 142 50.0
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 3.0e-23 112.5 164 42.1
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 5.1e-23 111.7 143 50.3
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 5.1e-23 111.7 149 47.0
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 6.7e-23 111.3 147 47.6
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 6.7e-23 111.3 134 50.7
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 8.7e-23 110.9 161 44.1
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 1.1e-22 110.5 143 47.6
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 3.3e-22 109.0 158 45.6
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 7.4e-22 107.8 152 48.0
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.3e-21 107.1 146 47.9
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 1.6e-21 106.7 157 45.2
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 1.6e-21 106.7 157 45.2
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 1.6e-21 106.7 157 45.2
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 2.1e-21 106.3 151 47.7
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 6.2e-21 104.8 159 43.4
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 6.2e-21 104.8 181 42.5
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 8.2e-21 104.4 145 46.9
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 1.1e-20 104.0 159 44.0
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.8e-20 103.2 176 37.5
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 3.1e-20 102.4 151 43.7
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 5.3e-20 101.7 167 40.1
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 6.9e-20 101.3 147 47.6
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 9.0e-20 100.9 146 45.9
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 1.2e-19 100.5 144 47.9
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 3.4e-19 99.0 151 41.1
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 4.5e-19 98.6 159 42.8
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 4.5e-19 98.6 152 44.1
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 4.5e-19 98.6 184 36.4
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 7.6e-19 97.8 143 46.9
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 1.3e-18 97.1 146 43.2
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 3.8e-18 95.5 165 39.4
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 5.0e-18 95.1 165 39.4
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 5.0e-18 95.1 162 38.9
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 6.5e-18 94.7 161 44.1
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 8.4e-18 94.4 167 41.3
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.4e-17 93.6 157 38.2
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 2.5e-17 92.8 174 39.1
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 3.2e-17 92.4 169 40.2
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 4.2e-17 92.0 160 39.4
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 9.3e-17 90.9 160 38.1
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 4.6e-16 88.6 171 35.7
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 7.9e-16 87.8 163 39.3
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 1.0e-15 87.4 155 36.1
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 1.0e-15 87.4 145 37.9
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 1.0e-15 87.4 144 39.6
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 1.0e-15 87.4 146 44.5
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 1.8e-15 86.7 141 44.7
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 3.0e-15 85.9 144 42.4
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 3.9e-15 85.5 154 37.7
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 5.1e-15 85.1 168 38.1
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 5.1e-15 85.1 154 39.6
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 6.7e-15 84.7 144 38.2
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 8.7e-15 84.3 135 40.0
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 1.1e-14 84.0 135 40.0
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 1.1e-14 84.0 135 40.0
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 1.1e-14 84.0 135 40.0
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 1.5e-14 83.6 90 50.0
SalBow1G2562 Salvia bowleyana HOM05D005006 ORTHO05D005903 1.5e-14 83.6 99 49.5
SalBow1G1740 Salvia bowleyana HOM05D005006 ORTHO05D005903 1.9e-14 83.2 99 48.5
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 2.5e-14 82.8 163 39.9
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 3.3e-14 82.4 150 37.3
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 1.6e-13 80.1 152 39.5
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 4.8e-13 78.6 98 48.0
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 3.1e-12 75.9 156 35.3
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 3.4e-11 72.4 133 39.8
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 7.7e-11 71.2 71 52.1
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 2.2e-10 69.7 94 44.7
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 3.8e-10 68.9 54 57.4
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 5.0e-10 68.6 115 42.6
Rhsim02G0241700 Rhododendron simsii HOM05D000089 ORTHO05D003403 6.5e-10 68.2 80 48.8
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 1.1e-09 67.4 80 47.5
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 4.2e-09 65.5 52 61.5
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 5.5e-09 65.1 77 50.6
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 9.4e-09 64.3 102 40.2
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 9.4e-09 64.3 102 40.2
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 6.1e-08 61.6 119 37.8
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.0e-07 60.8 114 41.2
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.0e-07 60.8 114 41.2
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.0e-07 60.8 114 41.2
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.3e-07 59.7 119 37.0
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 2.3e-07 59.7 119 37.0
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 6.7e-07 58.2 143 33.6
Os06g0525200 Oryza sativa ssp. japonica HOM05D005006 ORTHO05D005903 4.3e-06 55.5 150 34.0
CSS0044713 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 5.7e-06 55.1 132 35.6


User provided reference genes

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