Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold111G31401 Striga asiatica HOM05D006022 ORTHO05D007649 0.0e+00 2073.1 1118 100.0
MSTRG.1801 Avicennia marina HOM05D006022 ORTHO05D007649 0.0e+00 1093.2 1200 55.8
Migut.E01259 Erythranthe guttata HOM05D006022 ORTHO05D007649 2.1e-275 953.0 1157 53.6
Cc08_g16230 Coffea canephora HOM05D006022 ORTHO05D007649 1.9e-228 797.0 1211 45.0
Dinv38822 Davidia involucrata HOM05D006022 ORTHO05D007406 5.5e-228 795.4 1259 44.4
Sopen12g024380 Solanum pennellii HOM05D006022 ORTHO05D007649 4.0e-226 789.3 1181 45.9
Solyc12g055910.3 Solanum lycopersicum HOM05D006022 ORTHO05D007649 2.0e-225 786.9 1180 45.7
Actinidia22171 Actinidia chinensis HOM05D006022 ORTHO05D007649 1.6e-222 777.3 1207 45.4
Peaxi162Scf00117g00919 Petunia axillaris HOM05D006022 ORTHO05D007649 6.6e-221 771.9 1184 45.4
RhsimUnG0007600 Rhododendron simsii HOM05D006022 ORTHO05D007649 1.1e-220 771.2 1179 45.5
CAN.G390.10 Capsicum annuum HOM05D006022 ORTHO05D007649 2.5e-220 770.0 1173 44.8
Nitab4.5_0004010g0010 Nicotiana tabacum HOM05D006022 ORTHO05D007649 2.5e-220 770.0 1195 45.4
vmacro11345 Vaccinium macrocarpon HOM05D006022 ORTHO05D007649 1.6e-219 767.3 1188 45.0
Rhsim02G0245100 Rhododendron simsii HOM05D006022 ORTHO05D007649 4.7e-219 765.8 1180 45.2
Hma1.2p1_0359F.1_g135140 Hydrangea macrophylla HOM05D006022 ORTHO05D007649 4.4e-217 759.2 1191 44.8
Lj2A165T43 Lonicera japonica HOM05D006022 ORTHO05D007649 4.3e-212 742.7 1232 44.4
QL02p030100 Quercus lobata HOM05D006022 ORTHO05D007649 2.1e-211 740.3 1272 41.7
Cfa011987 Carpinus fangiana HOM05D006022 ORTHO05D007649 3.1e-210 736.5 1221 42.9
Thecc.03G300300 Theobroma cacao HOM05D006022 ORTHO05D007649 1.5e-209 734.2 1247 42.9
Gohir.A08G112400 Gossypium hirsutum HOM05D006022 ORTHO05D007649 4.4e-209 732.6 1201 43.0
Nitab4.5_0004515g0030 Nicotiana tabacum HOM05D006022 ORTHO05D007649 7.5e-209 731.9 1139 45.3
Prupe.5G122300 Prunus persica HOM05D006022 ORTHO05D007649 2.9e-208 729.9 1249 41.3
GSVIVG01019556001 Vitis vinifera HOM05D006022 ORTHO05D007649 6.4e-208 728.8 1175 43.6
Gorai.004G132300 Gossypium raimondii HOM05D006022 ORTHO05D007649 3.2e-207 726.5 1209 42.4
Ciclev10018527m.g Citrus clementina HOM05D006022 ORTHO05D007649 5.4e-207 725.7 1200 43.6
Gohir.D08G125400 Gossypium hirsutum HOM05D006022 ORTHO05D007649 7.8e-206 721.8 1209 42.3
MD14G1130300 Malus domestica HOM05D006022 ORTHO05D007649 2.3e-205 720.3 1226 42.3
Potri.001G089900 Populus trichocarpa HOM05D006022 ORTHO05D007649 1.5e-204 717.6 1207 42.4
CiPaw.12G081600 Carya illinoinensis HOM05D006022 ORTHO05D007649 4.3e-204 716.1 1218 42.1
CANSAT21G0687 Cannabis sativa HOM05D006022 ORTHO05D007649 4.7e-203 712.6 1175 43.6
Sabra01G0066300 Salix brachista HOM05D006022 ORTHO05D007649 2.0e-201 707.2 1229 41.3
Haze_09085 Corylus avellana HOM05D006022 ORTHO05D007649 6.4e-200 702.2 1323 39.8
Duzib084G0652 Durio zibethinus HOM05D006022 ORTHO05D007649 1.4e-199 701.0 1248 41.9
TAR375G1078 Trochodendron aralioides HOM05D006022 ORTHO05D007649 9.2e-199 698.4 1222 41.7
HanXRQChr10g0316931 Helianthus annuus HOM05D006022 ORTHO05D007649 4.6e-198 696.0 1164 41.9
MD06G1109300 Malus domestica HOM05D006022 ORTHO05D007649 6.0e-198 695.7 1235 41.9
ECA233G0648 Erigeron canadensis HOM05D006022 ORTHO05D007649 1.0e-197 694.9 1164 41.3
Nn1g00246 Nelumbo nucifera HOM05D006022 ORTHO05D007649 3.9e-197 693.0 1279 41.0
Lj4g0024036 Lotus japonicus HOM05D006022 ORTHO05D007649 1.6e-195 687.6 1186 43.5
Medtr8g099585 Medicago truncatula HOM05D006022 ORTHO05D007649 1.4e-194 684.5 1197 41.4
Ca_17472_v3 Cicer arietinum L. HOM05D006022 ORTHO05D007649 3.1e-194 683.3 1212 41.3
Manes.01G050200 Manihot esculenta HOM05D006022 ORTHO05D007649 3.1e-194 683.3 1203 42.1
Psat7g023280 Pisum sativum HOM05D006022 ORTHO05D007649 3.1e-194 683.3 1183 41.8
Glyma.08G023800 Glycine max HOM05D006022 ORTHO05D007649 5.8e-193 679.1 1224 40.8
FAN18G3678 Fragaria x ananassa HOM05D006022 ORTHO05D007649 7.6e-193 678.7 1228 41.0
unitig_26.g9566 Utricularia gibba HOM05D006022 ORTHO05D007649 4.9e-192 676.0 1125 43.6
RcHm_v2.0_Chr7g0194241 Rosa chinensis HOM05D006022 ORTHO05D007649 8.4e-192 675.2 1229 40.2
Phvul.002G299600 Phaseolus vulgaris HOM05D006022 ORTHO05D007649 7.1e-191 672.2 1209 40.6
FAN18G0793 Fragaria x ananassa HOM05D006022 ORTHO05D007649 9.2e-191 671.8 1227 39.9
Glyma.05G217800 Glycine max HOM05D006022 ORTHO05D007649 2.7e-190 670.2 1232 40.3
FAN04G2854 Fragaria x ananassa HOM05D006022 ORTHO05D007649 1.3e-189 667.9 1228 40.4
FvH4_5g04850 Fragaria vesca HOM05D006022 ORTHO05D007649 2.3e-189 667.2 1226 40.1
Lsat_1_v5_gn_6_8380 Lactuca sativa HOM05D006022 ORTHO05D007649 3.0e-189 666.8 1128 42.6
MELO3C005765.2 Cucumis melo HOM05D006022 ORTHO05D007649 6.6e-189 665.6 1214 41.8
arahy.Tifrunner.gnm1.ann1.MN1JRI Arachis hypogaea HOM05D006022 ORTHO05D007649 1.1e-188 664.8 1214 40.4
Hund14211 Selenicereus undatus HOM05D006022 ORTHO05D007649 1.1e-188 664.8 1158 41.8
THA.LOC104807002 Tarenaya hassleriana HOM05D006022 ORTHO05D007649 3.6e-187 659.8 1158 40.9
VMungo0251G1998 Vigna mungo HOM05D006022 ORTHO05D007649 8.1e-187 658.7 1203 40.6
CsaV3_5G001870 Cucumis sativus L. HOM05D006022 ORTHO05D007649 1.4e-186 657.9 1214 41.5
TPR.G3389 Trifolium pratense HOM05D006022 ORTHO05D007649 1.2e-185 654.8 1215 40.2
PGR042G3794 Punica granatum HOM05D006022 ORTHO05D007649 2.0e-185 654.1 1193 40.7
CSS0021468 Camellia sinensis var. sinensis HOM05D006022 ORTHO05D007649 1.3e-184 651.4 925 47.4
Sed0008879 Sechium edule HOM05D006022 ORTHO05D007649 1.3e-184 651.4 1172 40.7
Lalb_Chr05g0224031 Lupinus albus HOM05D006022 ORTHO05D007649 4.9e-184 649.4 1211 40.9
TWI81G0375 Tripterygium wilfordii HOM05D006022 ORTHO05D007649 5.4e-183 646.0 1282 38.5
Atru.chr9.1963 Acer truncatum HOM05D006022 ORTHO05D007649 1.5e-180 637.9 1110 42.0
Aqoxy5G04291 Aquilegia oxysepala HOM05D006022 ORTHO05D007649 1.5e-180 637.9 1258 38.8
MBI07_g39841_MAGBIO Magnolia biondii HOM05D006022 ORTHO05D007649 5.6e-180 636.0 1315 38.3
arahy.Tifrunner.gnm1.ann1.DK6PZW Arachis hypogaea HOM05D006022 ORTHO05D007649 6.2e-179 632.5 1147 41.2
PSO170G1024 Papaver somniferum HOM05D006022 ORTHO05D007649 4.0e-178 629.8 1203 41.9
AUR62010858 Chenopodium quinoa HOM05D006022 ORTHO05D007649 2.6e-177 627.1 1180 39.7
Cpa.g.sc79.13 Carica papaya HOM05D006022 ORTHO05D007649 2.9e-176 623.6 985 44.7
EL10Ac5g12933 Beta vulgaris HOM05D006022 ORTHO05D007649 6.4e-176 622.5 1149 40.0
ClCG01G001730 Citrullus lanatus HOM05D006022 ORTHO05D007649 1.4e-175 621.3 1192 40.8
COL.COLO4_10720 Corchorus olitorius HOM05D006022 ORTHO05D007649 1.9e-175 620.9 1136 42.3
DCAR_029909 Daucus carota HOM05D006022 ORTHO05D007649 9.6e-172 608.6 1078 41.9
BolC3t15840H Brassica oleracea HOM05D006022 ORTHO05D007649 3.2e-167 593.6 1152 39.5
C03p35290 Brassica napus HOM05D006022 ORTHO05D007649 4.2e-167 593.2 1147 39.5
BcaC01g04650 Brassica carinata HOM05D006022 ORTHO05D007649 9.3e-167 592.0 1147 39.4
AT4G10930 Arabidopsis thaliana HOM05D006022 ORTHO05D007649 1.6e-166 591.3 1165 38.5
BraA03t12116Z Brassica rapa HOM05D006022 ORTHO05D007649 4.6e-166 589.7 1149 39.6
A03p29210 Brassica napus HOM05D006022 ORTHO05D007649 6.0e-166 589.3 1149 39.9
BcaB01g02727 Brassica carinata HOM05D006022 ORTHO05D007649 1.9e-164 584.3 1155 39.3
Sp6g06550 Schrenkiella parvula HOM05D006022 ORTHO05D007649 9.6e-164 582.0 1134 39.2
AUR62019856 Chenopodium quinoa HOM05D006022 ORTHO05D007649 6.2e-163 579.3 1179 38.1
AL6G45030 Arabidopsis lyrata HOM05D006022 ORTHO05D007649 1.4e-162 578.2 1161 38.0
Carub.0006s2968 Capsella rubella HOM05D006022 ORTHO05D007649 1.4e-159 568.2 1196 37.7
Eucgr.E00880 Eucalyptus grandis HOM05D006022 ORTHO05D007649 2.8e-155 553.9 885 45.2
CARHR255670 Cardamine hirsuta HOM05D006022 ORTHO05D007649 1.2e-150 538.5 1073 39.7
Thhalv10028398m.g Eutrema salsugineum HOM05D006022 ORTHO05D007649 1.1e-148 531.9 1077 38.8
Ah.07g197550 Amaranthus hybridus HOM05D006022 ORTHO05D007649 6.3e-147 526.2 1342 34.3
ATR0602G083 Amborella trichopoda HOM05D006022 ORTHO05D007649 1.7e-139 501.5 1219 35.3
Zm00001eb209080 Zea mays HOM05D006022 ORTHO05D007649 2.7e-113 414.5 1199 32.1
Sc22g0004930 Simmondsia chinensis HOM05D006022 ORTHO05D007649 6.4e-99 366.7 732 39.9
Oeu023154.1 Olea europaea HOM05D006022 ORTHO05D007649 1.7e-91 342.0 443 47.9
SEGI_16880 Sequoiadendron giganteum HOM05D006022 ORTHO05D007649 2.3e-88 331.6 1208 29.6
HPP92_009829 Vanilla planifolia HOM05D006022 ORTHO05D007649 3.4e-84 317.8 875 33.9
Duzib205G1781 Durio zibethinus HOM05D006022 ORTHO05D007649 2.0e-76 292.0 492 42.5
Sc22g0004920 Simmondsia chinensis HOM05D006022 ORTHO05D007649 9.6e-71 273.1 420 42.9
Oeu009975.1 Olea europaea HOM05D006022 ORTHO05D007649 3.2e-66 258.1 406 43.3
Pp3c6_15100 Physcomitrium patens HOM05D006022 ORTHO05D007649 4.2e-66 257.7 1317 27.0
Os12g0209700 Oryza sativa ssp. japonica HOM05D006022 ORTHO05D007649 4.6e-57 227.6 564 34.0
SHI06973 Sapria himalayana HOM05D006022 ORTHO05D007649 8.4e-51 206.8 383 38.1
TPR.G40773 Trifolium pratense HOM05D006022 ORTHO05D007649 2.1e-46 192.2 239 46.0
Mapoly0002s0107 Marchantia polymorpha HOM05D006022 ORTHO05D007649 3.8e-43 181.4 864 27.2
SMO364G0157 Selaginella moellendorffii HOM05D003349 ORTHO05D003898 4.9e-43 181.0 1180 24.2
Oeu009974.1 Olea europaea HOM05D006022 ORTHO05D007649 5.1e-40 171.0 284 42.3
SGA_v2.0_scaffold169G38721 Striga asiatica HOM05D002942 ORTHO05D003270 1.3e-22 113.2 129 52.7
Hund11381 Selenicereus undatus HOM05D006022 ORTHO05D007649 1.1e-21 110.2 114 53.5
SGA_v2.0_scaffold49G18107 Striga asiatica HOM05D006022 ORTHO05D007649 5.9e-20 104.4 150 45.3
Ah.12g052650 Amaranthus hybridus HOM05D006022 ORTHO05D007649 7.2e-18 97.4 73 58.9
SGA_v2.0_scaffold130G34351 Striga asiatica HOM05D006022 ORTHO05D007649 9.4e-18 97.1 165 40.6
Actinidia11683 Actinidia chinensis HOM05D006022 ORTHO05D007649 1.4e-16 93.2 112 50.0
SGA_v2.0_scaffold408G51088 Striga asiatica HOM05D006022 ORTHO05D007649 5.7e-15 87.8 117 46.2
AagrBONN_evm.TU.Sc2ySwM_228.3550 Anthoceros agrestis HOM05D006022 ORTHO05D007649 3.7e-14 85.1 78 48.7
HPP92_009830 Vanilla planifolia HOM05D006022 ORTHO05D007649 7.0e-13 80.9 84 52.4
Psat4g095080 Pisum sativum HOM05D006022 ORTHO05D007649 4.5e-12 78.2 123 38.2
SHI06972 Sapria himalayana HOM05D006022 ORTHO05D007649 2.9e-11 75.5 97 46.4
SGA_v2.0_scaffold83G26437 Striga asiatica HOM05D000006 ORTHO05D000001 4.2e-10 71.6 122 40.2
CBR_g31499 Chara braunii HOM05D006022 ORTHO05D007649 1.5e-07 63.2 193 30.1


User provided reference genes

Program Settings