Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 9.9e-213 743.4 445 100.0
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 9.5e-155 550.8 444 72.1
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 4.3e-147 525.4 442 65.2
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 6.0e-117 425.2 443 53.3
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 8.1e-114 414.8 441 52.6
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 6.4e-111 405.2 442 52.5
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 5.4e-110 402.1 441 51.2
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.1e-107 394.4 430 52.3
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 1.9e-107 393.7 422 53.6
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 9.6e-107 391.3 441 50.8
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 8.1e-106 388.3 443 51.5
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 9.0e-105 384.8 441 58.3
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 6.4e-103 378.6 442 48.0
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 1.8e-100 370.5 442 48.9
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 5.6e-99 365.5 442 48.2
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 1.6e-98 364.0 441 51.9
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 2.8e-98 363.2 439 48.5
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 2.8e-98 363.2 444 46.4
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 3.7e-98 362.8 442 48.2
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 3.7e-98 362.8 442 47.5
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 8.1e-98 361.7 443 48.3
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 1.8e-97 360.5 402 50.5
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 5.3e-97 359.0 442 55.4
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.0e-96 357.1 442 57.0
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 3.4e-96 356.3 442 47.1
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 2.9e-95 353.2 442 46.2
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 3.8e-95 352.8 381 52.2
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 1.1e-94 351.3 442 47.3
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 1.1e-94 351.3 442 44.8
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 3.2e-94 349.7 444 55.9
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 1.2e-93 347.8 547 41.3
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 2.1e-93 347.1 442 48.2
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 4.6e-93 345.9 429 45.7
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 7.9e-93 345.1 478 43.3
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 7.9e-93 345.1 440 46.4
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 1.0e-92 344.7 440 45.0
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 1.3e-92 344.4 446 46.2
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.8e-92 344.0 430 46.0
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 5.1e-92 342.4 441 45.1
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 8.7e-92 341.7 429 45.2
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 1.1e-91 341.3 436 45.4
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 1.1e-91 341.3 435 45.7
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 5.7e-91 339.0 435 44.6
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 5.7e-91 339.0 441 45.4
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 3.7e-90 336.3 436 43.8
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 1.4e-89 334.3 443 44.7
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 2.4e-89 333.6 435 44.8
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 5.3e-89 332.4 441 49.4
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 9.0e-89 331.6 441 42.9
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 2.6e-88 330.1 378 49.2
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 3.4e-88 329.7 442 43.2
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 1.0e-87 328.2 444 43.9
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 5.0e-87 325.9 440 43.0
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.9e-86 323.9 420 55.5
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 4.2e-86 322.8 435 43.2
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 4.2e-86 322.8 434 43.1
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 1.6e-85 320.9 442 53.4
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 4.6e-85 319.3 441 43.8
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 6.1e-85 318.9 469 40.3
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 7.9e-85 318.5 441 42.9
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 2.3e-84 317.0 445 44.0
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 1.5e-83 314.3 442 42.8
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 1.9e-83 313.9 442 43.2
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 1.9e-83 313.9 444 44.4
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 2.5e-83 313.5 441 42.4
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 3.3e-83 313.2 433 43.4
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 1.3e-82 311.2 444 42.3
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 6.3e-82 308.9 374 48.9
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.1e-81 308.1 463 40.8
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 1.4e-81 307.8 442 42.5
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.4e-81 307.8 327 53.5
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 6.9e-81 305.4 448 43.8
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.0e-80 303.9 442 51.8
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 2.6e-80 303.5 442 42.8
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 3.4e-80 303.1 451 41.2
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 3.4e-80 303.1 451 41.2
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 1.3e-79 301.2 451 41.2
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 6.5e-79 298.9 435 43.0
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 1.4e-78 297.7 488 38.9
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.4e-78 297.7 463 40.4
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 2.5e-78 297.0 441 42.0
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 5.5e-78 295.8 442 41.6
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 9.4e-78 295.0 420 52.4
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 1.6e-77 294.3 441 43.1
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 1.5e-75 287.7 597 34.3
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 5.7e-75 285.8 308 53.9
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 7.4e-75 285.4 445 45.8
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 9.7e-75 285.0 441 46.7
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 2.2e-74 283.9 438 45.2
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 2.6e-72 276.9 441 40.6
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.6e-72 276.9 441 40.6
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 3.4e-72 276.6 252 57.1
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 3.8e-71 273.1 443 38.6
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 5.0e-71 272.7 448 40.6
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 6.5e-71 272.3 393 49.6
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 1.4e-70 271.2 440 40.2
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 4.2e-70 269.6 455 37.4
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 1.2e-69 268.1 442 42.1
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 4.7e-69 266.2 433 38.3
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 1.0e-68 265.0 440 38.9
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 3.9e-68 263.1 357 43.1
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 4.8e-66 256.1 428 38.6
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 2.4e-65 253.8 453 37.7
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 4.5e-64 249.6 442 37.1
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 4.5e-64 249.6 441 36.3
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 4.2e-62 243.0 329 41.3
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 7.2e-62 242.3 433 36.3
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 2.1e-61 240.7 353 42.2
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 2.1e-61 240.7 394 38.3
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 1.9e-54 217.6 450 35.3
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 1.7e-50 204.5 436 35.3
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 8.3e-50 202.2 251 51.8
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 9.1e-49 198.7 438 32.9
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 1.2e-48 198.4 217 55.3
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 1.6e-48 198.0 349 39.5
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 1.6e-48 198.0 170 65.9
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 1.6e-48 198.0 463 33.3
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 1.0e-47 195.3 349 47.0
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 2.9e-47 193.7 292 38.7
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 3.8e-47 193.4 299 45.5
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 6.5e-47 192.6 614 28.8
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 6.1e-45 186.0 191 48.7
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 8.8e-44 182.2 446 30.5
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 1.2e-40 171.8 205 42.0
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 1.3e-39 168.3 185 47.0
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.5e-38 164.1 413 31.0
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 5.7e-35 152.9 281 35.2
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 1.4e-33 148.3 444 32.9
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 1.0e-31 142.1 132 50.0
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 9.2e-25 119.0 209 41.6
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 3.0e-23 114.0 98 55.1
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 1.1e-22 112.1 151 47.0
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.9e-22 111.3 98 54.1
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 5.6e-22 109.8 112 56.2
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.6e-21 108.2 98 53.1
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 3.6e-21 107.1 99 47.5
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 5.8e-19 99.8 136 48.5
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 5.8e-19 99.8 412 24.0
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 9.8e-19 99.0 135 39.3
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.7e-18 98.2 431 25.1
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 2.2e-18 97.8 147 42.9
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 1.6e-16 91.7 404 26.0
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 6.6e-15 86.3 255 29.0
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 8.4e-10 69.3 133 35.3
MBI17_g42496_MAGBIO Magnolia biondii HOM05D004546 ORTHO05D005419 2.4e-09 67.8 73 41.1
Pp3c12_6220 Physcomitrium patens HOM05D004546 ORTHO05D005419 5.4e-09 66.6 437 32.3
TPR.G18400 Trifolium pratense HOM05D004546 ORTHO05D005419 5.4e-09 66.6 63 55.6
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 7.8e-08 62.8 93 41.9
Mapoly0004s0096 Marchantia polymorpha HOM05D004546 ORTHO05D005419 1.3e-07 62.0 187 29.4
Actinidia39037 Actinidia chinensis HOM05D004546 ORTHO05D005419 2.3e-07 61.2 71 46.5


User provided reference genes

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