Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold110G31210 Striga asiatica HOM05D003726 ORTHO05D003520 3.4e-231 804.7 416 100.0
Migut.L02021 Erythranthe guttata HOM05D003726 ORTHO05D003520 9.4e-48 195.3 395 39.0
MSTRG.26816 Avicennia marina HOM05D003726 ORTHO05D003520 1.5e-45 188.0 370 40.0
SalBow4G2563 Salvia bowleyana HOM05D003726 ORTHO05D003520 7.0e-35 152.5 360 37.8
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 3.3e-32 143.7 367 33.8
Solyc09g005570.3 Solanum lycopersicum HOM05D003726 ORTHO05D003520 4.7e-31 139.8 357 35.3
Sopen09g001480 Solanum pennellii HOM05D003726 ORTHO05D003520 4.7e-31 139.8 357 35.3
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 5.2e-30 136.3 396 33.6
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 4.1e-27 126.7 370 32.7
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.6e-26 124.8 359 34.0
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 3.9e-25 120.2 400 29.8
PGSC0003DMG400030244 Solanum tuberosum HOM05D003726 ORTHO05D003520 5.0e-25 119.8 355 31.8
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 4.3e-24 116.7 401 30.9
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 5.6e-24 116.3 402 29.4
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 7.3e-24 115.9 400 31.5
Actinidia11576 Actinidia chinensis HOM05D003726 ORTHO05D003520 2.8e-23 114.0 347 32.0
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 6.2e-23 112.8 402 31.8
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 3.1e-22 110.5 369 31.4
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 2.0e-21 107.8 408 30.4
Oeu054393.1 Olea europaea HOM05D003726 ORTHO05D003520 2.6e-21 107.5 368 32.6
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 9.8e-21 105.5 376 30.1
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 1.3e-20 105.1 192 42.2
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.9e-20 104.0 372 30.1
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 4.9e-20 103.2 379 30.3
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 4.9e-20 103.2 398 29.9
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 8.3e-20 102.4 343 31.2
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 1.9e-19 101.3 395 26.3
Gorai.006G183100 Gossypium raimondii HOM05D003726 ORTHO05D003520 2.4e-19 100.9 371 29.4
Gohir.D04G131050 Gossypium hirsutum HOM05D003726 ORTHO05D003520 7.0e-19 99.4 349 28.7
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 1.6e-18 98.2 374 29.9
Gorai.012G114900 Gossypium raimondii HOM05D003726 ORTHO05D003520 2.7e-18 97.4 347 29.7
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 7.8e-18 95.9 362 27.6
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 7.8e-18 95.9 342 33.0
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 1.7e-17 94.7 402 28.9
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 2.3e-17 94.4 308 36.0
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 6.6e-17 92.8 411 28.5
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 6.6e-17 92.8 177 37.9
Lsat_1_v5_gn_5_149441 Lactuca sativa HOM05D003726 ORTHO05D003520 8.6e-17 92.4 345 30.1
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 8.6e-17 92.4 393 27.2
Gohir.D09G161366 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.1e-16 92.0 359 29.2
Peaxi162Scf00170g00213 Petunia axillaris HOM05D003726 ORTHO05D003520 1.5e-16 91.7 189 37.0
TWI74G0063 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 1.5e-16 91.7 408 28.4
Peaxi162Scf79720g00003 Petunia axillaris HOM05D003726 ORTHO05D003520 4.3e-16 90.1 315 30.8
Eucgr.A00522 Eucalyptus grandis HOM05D003726 ORTHO05D003520 1.6e-15 88.2 133 42.9
PGR031G0398 Punica granatum HOM05D003726 ORTHO05D003520 2.1e-15 87.8 134 41.8
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 2.8e-15 87.4 132 42.4
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 3.6e-15 87.0 195 35.4
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 4.7e-15 86.7 416 26.4
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 6.2e-15 86.3 399 27.8
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 8.1e-15 85.9 414 27.3
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 1.1e-14 85.5 358 27.9
FAN14G0787 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.1e-14 85.5 411 27.0
FAN09G2526 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.3e-14 84.3 408 25.7
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 2.3e-14 84.3 209 35.4
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 3.1e-14 84.0 143 37.1
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 3.1e-14 84.0 360 27.8
Prupe.6G278700 Prunus persica HOM05D003726 ORTHO05D003520 3.1e-14 84.0 203 37.9
Glyma.01G120800 Glycine max HOM05D003726 ORTHO05D003520 4.0e-14 83.6 127 44.9
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 5.2e-14 83.2 400 28.5
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 5.2e-14 83.2 199 37.2
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 1.2e-13 82.0 137 40.9
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 1.5e-13 81.6 389 27.0
FvH4_6g11320 Fragaria vesca HOM05D003726 ORTHO05D003520 1.5e-13 81.6 420 26.2
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 1.5e-13 81.6 191 35.6
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 2.0e-13 81.3 282 28.4
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 2.6e-13 80.9 174 35.1
EL10Ac5g12551 Beta vulgaris HOM05D029928 ORTHO05D003520 3.4e-13 80.5 365 27.4
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 4.4e-13 80.1 203 32.5
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 4.4e-13 80.1 190 34.7
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 4.4e-13 80.1 294 30.3
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 9.9e-13 79.0 203 35.0
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 9.9e-13 79.0 378 28.3
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 1.3e-12 78.6 369 28.2
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 1.7e-12 78.2 168 36.3
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 2.2e-12 77.8 201 32.8
RcHm_v2.0_Chr3g0462881 Rosa chinensis HOM05D003726 ORTHO05D003520 2.2e-12 77.8 419 25.8
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 3.7e-12 77.0 392 27.8
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 4.9e-12 76.6 380 27.4
AUR62030799 Chenopodium quinoa HOM05D029928 ORTHO05D003520 4.9e-12 76.6 241 32.0
FAN14G4204 Fragaria x ananassa HOM05D003726 ORTHO05D003520 8.3e-12 75.9 188 33.0
Glyma.03G056800 Glycine max HOM05D003726 ORTHO05D003520 1.1e-11 75.5 221 36.2
Hund11000 Selenicereus undatus HOM05D046068 ORTHO05D003520 2.4e-11 74.3 210 32.4
VMungo1383G2513 Vigna mungo HOM05D003726 ORTHO05D003520 2.4e-11 74.3 122 42.6
THA.LOC104816197 Tarenaya hassleriana HOM05D013727 ORTHO05D003520 3.2e-11 73.9 410 25.6
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 5.4e-11 73.2 368 26.4
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 5.4e-11 73.2 254 29.9
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 5.4e-11 73.2 177 33.3
Sc07g0006660 Simmondsia chinensis HOM05D003726 ORTHO05D003520 5.4e-11 73.2 367 25.3
Glyma.07G151200 Glycine max HOM05D003726 ORTHO05D003520 9.2e-11 72.4 198 37.4
arahy.Tifrunner.gnm1.ann1.3NQ7J1 Arachis hypogaea HOM05D003726 ORTHO05D003520 2.1e-10 71.2 125 39.2
arahy.Tifrunner.gnm1.ann1.DIZ6KI Arachis hypogaea HOM05D003726 ORTHO05D003520 2.1e-10 71.2 125 39.2
Medtr4g015650 Medicago truncatula HOM05D003726 ORTHO05D003520 2.7e-10 70.9 175 35.4
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 2.7e-10 70.9 366 27.6
Nitab4.5_0008578g0030 Nicotiana tabacum HOM05D003726 ORTHO05D003520 4.6e-10 70.1 393 26.7
Hund29902 Selenicereus undatus HOM05D046068 ORTHO05D003520 4.6e-10 70.1 210 31.4
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 4.6e-10 70.1 397 25.7
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 7.8e-10 69.3 233 33.0
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 7.8e-10 69.3 378 27.2
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.0e-09 68.9 378 27.2
Phvul.008G098200 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 1.0e-09 68.9 122 40.2
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 1.3e-09 68.6 361 27.7
CSS0025538 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.7e-09 68.2 339 28.0
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.7e-09 68.2 351 25.9
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 2.3e-09 67.8 237 32.5
CSS0029870 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 2.3e-09 67.8 339 28.0
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 2.3e-09 67.8 397 25.4
Lj3g0010607 Lotus japonicus HOM05D003726 ORTHO05D003520 2.3e-09 67.8 199 33.7
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 2.3e-09 67.8 192 31.2
AUR62001632 Chenopodium quinoa HOM05D003726 ORTHO05D003520 3.0e-09 67.4 108 45.4
Glyma.18G202500 Glycine max HOM05D003726 ORTHO05D003520 3.0e-09 67.4 236 33.5
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 3.0e-09 67.4 194 32.5
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 3.0e-09 67.4 344 26.5
Thhalv10016075m.g Eutrema salsugineum HOM05D013727 ORTHO05D003520 3.9e-09 67.0 149 37.6
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 3.9e-09 67.0 130 34.6
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 5.1e-09 66.6 192 31.8
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 6.6e-09 66.2 391 29.4
BolC2t06018H Brassica oleracea HOM05D013727 ORTHO05D003520 8.6e-09 65.9 135 35.6
Lalb_Chr07g0193641 Lupinus albus HOM05D003726 ORTHO05D003520 8.6e-09 65.9 394 24.4
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 1.9e-08 64.7 297 27.9
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 1.9e-08 64.7 230 32.2
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 2.5e-08 64.3 362 28.2
Sp6g40680 Schrenkiella parvula HOM05D013727 ORTHO05D003520 3.3e-08 63.9 149 34.2
TPR.G13333 Trifolium pratense HOM05D003726 ORTHO05D003520 3.3e-08 63.9 172 36.0
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 4.3e-08 63.5 297 27.6
Lalb_Chr12g0207011 Lupinus albus HOM05D003726 ORTHO05D003520 4.3e-08 63.5 117 38.5
Sed0008005 Sechium edule HOM05D003726 ORTHO05D003520 4.3e-08 63.5 414 25.8
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 5.6e-08 63.2 382 26.2
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 5.6e-08 63.2 193 32.6
BraA02t04692Z Brassica rapa HOM05D013727 ORTHO05D003520 7.3e-08 62.8 143 37.1
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 9.5e-08 62.4 204 31.4
Carub.0006s0045 Capsella rubella HOM05D013727 ORTHO05D003520 1.2e-07 62.0 192 32.8
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 1.6e-07 61.6 358 23.2
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 2.1e-07 61.2 353 26.1
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 2.1e-07 61.2 112 38.4
Sp6g20330 Schrenkiella parvula HOM05D011448 ORTHO05D003520 2.8e-07 60.8 107 42.1
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 3.6e-07 60.5 268 27.2
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 4.7e-07 60.1 113 38.1
CARHR211750 Cardamine hirsuta HOM05D013727 ORTHO05D003520 4.7e-07 60.1 159 32.7
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 6.2e-07 59.7 402 25.9
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 6.2e-07 59.7 248 27.8
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 8.1e-07 59.3 186 32.3
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 8.1e-07 59.3 142 33.8
Psat7g245680 Pisum sativum HOM05D003726 ORTHO05D003520 8.1e-07 59.3 378 25.1
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 1.1e-06 58.9 333 27.0
Lalb_Chr04g0252221 Lupinus albus HOM05D003726 ORTHO05D003520 1.1e-06 58.9 169 32.5
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 1.1e-06 58.9 200 29.0
AL6G10750 Arabidopsis lyrata HOM05D013727 ORTHO05D003520 3.1e-06 57.4 241 29.9
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 3.1e-06 57.4 401 24.7
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 4.0e-06 57.0 343 26.8
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 4.0e-06 57.0 376 24.5
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 5.2e-06 56.6 401 27.4
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 6.8e-06 56.2 181 32.6
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 6.8e-06 56.2 265 29.4
AT5G01370 Arabidopsis thaliana HOM05D013727 ORTHO05D003520 8.9e-06 55.8 218 30.7


User provided reference genes

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