Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold10G05483 Striga asiatica HOM05D000003 ORTHO05D000006 1.0e-90 336.7 164 100.0
SGA_v2.0_scaffold409G51103 Striga asiatica HOM05D000003 ORTHO05D000006 5.1e-13 78.6 69 46.4
SGA_v2.0_scaffold2392G54112 Striga asiatica HOM05D000003 ORTHO05D000006 6.9e-10 68.2 64 46.9
SGA_v2.0_scaffold56G19930 Striga asiatica HOM05D000003 ORTHO05D000006 1.3e-08 63.9 60 46.7
SGA_v2.0_scaffold151G36755 Striga asiatica HOM05D000003 ORTHO05D000004 1.7e-08 63.5 70 40.0
SGA_v2.0_scaffold301G47800 Striga asiatica HOM05D000003 ORTHO05D000006 1.7e-08 63.5 67 41.8
Aa31sc773G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.8e-08 62.4 53 50.9
SGA_v2.0_scaffold275G46581 Striga asiatica HOM05D000003 ORTHO05D000004 3.8e-08 62.4 78 37.2
SGA_v2.0_scaffold17G08173 Striga asiatica HOM05D000003 ORTHO05D000004 6.4e-08 61.6 64 40.6
SGA_v2.0_scaffold1G00690 Striga asiatica HOM05D000003 ORTHO05D000004 1.1e-07 60.8 65 43.1
SGA_v2.0_scaffold250G45022 Striga asiatica HOM05D000003 ORTHO05D000004 1.1e-07 60.8 67 37.3
Rhsim03G0009500 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.4e-07 60.5 82 40.2
SGA_v2.0_scaffold61G21240 Striga asiatica HOM05D000003 ORTHO05D000006 1.4e-07 60.5 61 44.3
Atru.chr6.242 Acer truncatum HOM05D000003 ORTHO05D000006 1.9e-07 60.1 68 33.8
SGA_v2.0_scaffold98G29412 Striga asiatica HOM05D000003 ORTHO05D000006 2.4e-07 59.7 67 43.3
Rhsim03G0080700 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.2e-07 59.3 68 42.6
Rhsim04G0242400 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.2e-07 59.3 68 42.6
Aa31LG2G18920 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.1e-07 58.2 76 39.5
SGA_v2.0_scaffold99G29516 Striga asiatica HOM05D000003 ORTHO05D000006 9.3e-07 57.8 60 45.0
Atru.chr12.2516 Acer truncatum HOM05D000003 ORTHO05D000006 1.2e-06 57.4 54 42.6
COL.COLO4_24385 Corchorus olitorius HOM05D001792 ORTHO05D001821 1.2e-06 57.4 61 37.7
Atru.chr2.1199 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-06 57.0 61 42.6
Atru.chr2.314 Acer truncatum HOM05D000003 ORTHO05D000126 1.6e-06 57.0 61 44.3
Atru.chr5.2963 Acer truncatum HOM05D000003 ORTHO05D000006 1.6e-06 57.0 61 41.0
CANSAT35G1614 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 57.0 58 41.4
CANSAT54G2861 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 57.0 62 38.7
AUR62030276 Chenopodium quinoa HOM05D000003 ORTHO05D000006 1.6e-06 57.0 58 39.7
Aa31LG1G6030 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.1e-06 56.6 59 42.4
Aa31LG4G8300 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.1e-06 56.6 53 47.2
Aa31sc60G100 Aethionema arabicum HOM05D000003 ORTHO05D000006 2.1e-06 56.6 68 38.2
BolC4t24965H Brassica oleracea HOM05D000003 ORTHO05D018675 2.1e-06 56.6 52 48.1
Rhsim05G0162800 Rhododendron simsii HOM05D001637 ORTHO05D000006 2.1e-06 56.6 55 45.5
Rhsim08G0038600 Rhododendron simsii HOM05D002735 ORTHO05D003048 2.1e-06 56.6 57 43.9
Rhsim11G0006400 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.1e-06 56.6 56 44.6
TAR018G0001 Trochodendron aralioides HOM05D000003 ORTHO05D000004 2.1e-06 56.6 57 42.1
Atru.chr3.3509 Acer truncatum HOM05D000003 ORTHO05D000006 2.7e-06 56.2 55 40.0
Atru.chr7.130 Acer truncatum HOM05D000003 ORTHO05D000126 2.7e-06 56.2 70 35.7
Aa31sc16G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.7e-06 56.2 62 45.2
Rhsim02G0217100 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.7e-06 56.2 56 42.9
Rhsim03G0083500 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.7e-06 56.2 55 43.6
Atru.chr1.1302 Acer truncatum HOM05D000003 ORTHO05D000004 3.5e-06 55.8 73 41.1
Atru.chr10.81 Acer truncatum HOM05D000003 ORTHO05D000004 3.5e-06 55.8 56 46.4
Atru.chr5.3511 Acer truncatum HOM05D000003 ORTHO05D000006 3.5e-06 55.8 56 42.9
Aa31LG3G7500 Aethionema arabicum HOM05D000003 ORTHO05D000006 3.5e-06 55.8 62 43.5
Aa31sc85G60 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.5e-06 55.8 67 40.3
Aa31sc85G90 Aethionema arabicum HOM05D000003 ORTHO05D000006 3.5e-06 55.8 59 42.4
EL10Ac9g23004 Beta vulgaris HOM05D000003 ORTHO05D000004 3.5e-06 55.8 55 43.6
AUR62015302 Chenopodium quinoa HOM05D000003 ORTHO05D000004 3.5e-06 55.8 57 42.1
Rhsim02G0177800 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.5e-06 55.8 53 45.3
Rhsim05G0134900 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.5e-06 55.8 68 41.2
Atru.chr13.2518 Acer truncatum HOM05D000003 ORTHO05D000004 4.6e-06 55.5 62 40.3
Aa31LG3G18440 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.6e-06 55.5 68 39.7
Aa31sc174G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.6e-06 55.5 74 39.2
CANSAT21G0332 Cannabis sativa HOM05D000003 ORTHO05D000006 4.6e-06 55.5 63 39.7
CANSAT25G0932 Cannabis sativa HOM05D000003 ORTHO05D000004 4.6e-06 55.5 71 36.6
FvH4_6g23371 Fragaria vesca HOM05D000003 ORTHO05D000006 4.6e-06 55.5 56 42.9
Psat2g047560 Pisum sativum HOM05D000003 ORTHO05D000007 4.6e-06 55.5 58 37.9
Rhsim03G0080200 Rhododendron simsii HOM05D000003 ORTHO05D000019 4.6e-06 55.5 53 45.3
Rhsim09G0083100 Rhododendron simsii HOM05D000003 ORTHO05D000006 4.6e-06 55.5 85 31.8
Atru.chr5.1803 Acer truncatum HOM05D000003 ORTHO05D000006 6.0e-06 55.1 66 34.8
Atru.chr5.349 Acer truncatum HOM05D000003 ORTHO05D000006 6.0e-06 55.1 56 42.9
Atru.chr7.1503 Acer truncatum HOM05D000003 ORTHO05D000006 6.0e-06 55.1 62 37.1
arahy.Tifrunner.gnm1.ann1.456VX7 Arachis hypogaea HOM05D000003 ORTHO05D000004 6.0e-06 55.1 57 42.1
FvH4_4g06411 Fragaria vesca HOM05D000003 ORTHO05D000006 6.0e-06 55.1 57 43.9
Atru.chr1.776 Acer truncatum HOM05D000003 ORTHO05D000004 7.8e-06 54.7 55 41.8
Atru.chr10.1275 Acer truncatum HOM05D000003 ORTHO05D000004 7.8e-06 54.7 63 38.1
Atru.chr2.108 Acer truncatum HOM05D000003 ORTHO05D000004 7.8e-06 54.7 68 35.3
Atru.chr2.2490 Acer truncatum HOM05D000003 ORTHO05D000004 7.8e-06 54.7 59 40.7
Aa31sc688G40 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.8e-06 54.7 57 45.6
Rhsim06G0096800 Rhododendron simsii HOM05D000003 ORTHO05D000006 7.8e-06 54.7 55 41.8


User provided reference genes

Program Settings