Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold10G05439 Striga asiatica HOM05D006442 ORTHO05D007980 1.3e-75 286.2 133 100.0
SGA_v2.0_scaffold4G02243 Striga asiatica HOM05D006442 ORTHO05D007980 6.7e-72 273.9 133 94.7
MSTRG.28085 Avicennia marina HOM05D006442 ORTHO05D007980 1.0e-59 233.4 133 80.5
Oeu064276.1 Olea europaea HOM05D006442 ORTHO05D007980 3.6e-57 224.9 130 76.9
Cc02_g27340 Coffea canephora HOM05D006442 ORTHO05D007980 1.0e-56 223.4 133 74.4
Dinv43911 Davidia involucrata HOM05D006442 ORTHO05D007980 1.8e-56 222.6 130 75.4
Migut.N01489 Erythranthe guttata HOM05D006442 ORTHO05D007980 5.1e-56 221.1 133 75.2
Cc02_g27370 Coffea canephora HOM05D006442 ORTHO05D007980 1.5e-55 219.5 133 74.4
CSS0031684 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 2.5e-55 218.8 130 73.8
arahy.Tifrunner.gnm1.ann1.9R1925 Arachis hypogaea HOM05D006442 ORTHO05D007980 4.3e-55 218.0 130 73.1
arahy.Tifrunner.gnm1.ann1.A55RA3 Arachis hypogaea HOM05D006442 ORTHO05D007980 4.3e-55 218.0 130 73.1
Cfa010728 Carpinus fangiana HOM05D006442 ORTHO05D007980 5.7e-55 217.6 133 74.4
MD07G1004900 Malus domestica HOM05D006442 ORTHO05D007980 5.7e-55 217.6 133 72.9
CSS0016496 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 7.4e-55 217.2 130 73.1
FvH4_7g00510 Fragaria vesca HOM05D006442 ORTHO05D007980 1.7e-54 216.1 133 73.7
FAN06G2479 Fragaria x ananassa HOM05D006442 ORTHO05D007980 1.7e-54 216.1 133 73.7
FAN10G1890 Fragaria x ananassa HOM05D006442 ORTHO05D007980 1.7e-54 216.1 133 73.7
Prupe.2G007200 Prunus persica HOM05D006442 ORTHO05D007980 1.7e-54 216.1 133 72.9
TWI09G1159 Tripterygium wilfordii HOM05D006442 ORTHO05D007980 1.7e-54 216.1 130 73.8
Rhsim07G0053100 Rhododendron simsii HOM05D006442 ORTHO05D007980 2.2e-54 215.7 130 75.4
Manes.10G148300 Manihot esculenta HOM05D006442 ORTHO05D007980 2.8e-54 215.3 130 76.2
FAN03G1462 Fragaria x ananassa HOM05D006442 ORTHO05D007980 3.7e-54 214.9 133 72.9
Potri.001G225500 Populus trichocarpa HOM05D006442 ORTHO05D007980 3.7e-54 214.9 133 72.2
Glyma.15G271700 Glycine max HOM05D006442 ORTHO05D007980 6.3e-54 214.2 130 72.3
CAN.G1110.8 Capsicum annuum HOM05D006442 ORTHO05D007980 8.2e-54 213.8 133 70.7
Solyc10g037980.2 Solanum lycopersicum HOM05D006442 ORTHO05D007980 8.2e-54 213.8 130 72.3
PGSC0003DMG400026375 Solanum tuberosum HOM05D006442 ORTHO05D007980 8.2e-54 213.8 130 72.3
GSVIVG01032037001 Vitis vinifera HOM05D006442 ORTHO05D007980 1.1e-53 213.4 130 73.1
Haze_03245 Corylus avellana HOM05D006442 ORTHO05D007980 1.8e-53 212.6 133 72.2
HanXRQChr01g0018511 Helianthus annuus HOM05D006442 ORTHO05D007980 1.8e-53 212.6 133 71.4
RcHm_v2.0_Chr1g0314301 Rosa chinensis HOM05D006442 ORTHO05D007980 1.8e-53 212.6 133 72.2
SalBow5G2051 Salvia bowleyana HOM05D006442 ORTHO05D007980 1.8e-53 212.6 130 73.1
Lsat_1_v5_gn_8_7620 Lactuca sativa HOM05D006442 ORTHO05D007980 2.4e-53 212.2 133 70.7
Aqoxy1G00188 Aquilegia oxysepala HOM05D006442 ORTHO05D007980 3.1e-53 211.8 130 73.1
Nn2g15582 Nelumbo nucifera HOM05D006442 ORTHO05D007980 4.1e-53 211.5 129 74.4
Lj3g0007274 Lotus japonicus HOM05D006442 ORTHO05D007980 5.3e-53 211.1 130 70.8
Actinidia21568 Actinidia chinensis HOM05D006442 ORTHO05D007980 6.9e-53 210.7 129 72.1
Ciclev10033058m.g Citrus clementina HOM05D006442 ORTHO05D007980 6.9e-53 210.7 133 70.7
DCAR_006304 Daucus carota HOM05D006442 ORTHO05D007980 6.9e-53 210.7 133 71.4
Nitab4.5_0002012g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 6.9e-53 210.7 133 70.7
PGR042G3140 Punica granatum HOM05D006442 ORTHO05D007980 9.1e-53 210.3 130 71.5
Sopen10g011600 Solanum pennellii HOM05D006442 ORTHO05D007980 9.1e-53 210.3 130 71.5
Ah.16g101020 Amaranthus hybridus HOM05D006442 ORTHO05D007980 1.2e-52 209.9 130 71.5
Gohir.D09G099100 Gossypium hirsutum HOM05D006442 ORTHO05D007980 1.2e-52 209.9 132 72.7
Gorai.006G116100 Gossypium raimondii HOM05D006442 ORTHO05D007980 1.2e-52 209.9 132 72.7
Actinidia20688 Actinidia chinensis HOM05D006442 ORTHO05D007980 2.0e-52 209.1 129 72.9
Gohir.A09G099700 Gossypium hirsutum HOM05D006442 ORTHO05D007980 2.0e-52 209.1 132 72.7
Hma1.2p1_0010F.1_g007050 Hydrangea macrophylla HOM05D006442 ORTHO05D007980 2.0e-52 209.1 130 70.0
Peaxi162Scf00045g00327 Petunia axillaris HOM05D006442 ORTHO05D007980 2.0e-52 209.1 133 68.4
VMungo1080G0430 Vigna mungo HOM05D006442 ORTHO05D007980 2.0e-52 209.1 129 70.5
Glyma.08G151500 Glycine max HOM05D006442 ORTHO05D007980 2.6e-52 208.8 130 70.8
VMungo1080G0583 Vigna mungo HOM05D006442 ORTHO05D007980 2.6e-52 208.8 130 70.8
ECA248G1263 Erigeron canadensis HOM05D006442 ORTHO05D007980 3.4e-52 208.4 130 71.5
Duzib133G0004 Durio zibethinus HOM05D006442 ORTHO05D007980 4.5e-52 208.0 135 70.4
TPR.G12183 Trifolium pratense HOM05D006442 ORTHO05D007980 5.9e-52 207.6 130 68.5
Atru.chr11.2670 Acer truncatum HOM05D006442 ORTHO05D007980 7.7e-52 207.2 133 69.2
Nn7g36056 Nelumbo nucifera HOM05D006442 ORTHO05D007980 1.3e-51 206.5 130 71.5
Phvul.005G037200 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 1.3e-51 206.5 130 70.0
Oeu013593.2 Olea europaea HOM05D006442 ORTHO05D007980 1.7e-51 206.1 130 70.0
Sabra16G0134100 Salix brachista HOM05D006442 ORTHO05D007980 2.2e-51 205.7 133 69.9
AUR62023154 Chenopodium quinoa HOM05D006442 ORTHO05D007980 2.9e-51 205.3 129 69.8
Sc14g0005190 Simmondsia chinensis HOM05D006442 ORTHO05D007980 2.9e-51 205.3 130 68.5
TAR633G2790 Trochodendron aralioides HOM05D006442 ORTHO05D007980 2.9e-51 205.3 129 69.8
Medtr3g027090 Medicago truncatula HOM05D006442 ORTHO05D007980 8.5e-51 203.8 130 68.5
Eucgr.G03402 Eucalyptus grandis HOM05D006442 ORTHO05D007980 1.1e-50 203.4 130 67.7
CiPaw.12G060500 Carya illinoinensis HOM05D006442 ORTHO05D007980 1.4e-50 203.0 129 71.3
Phvul.005G038700 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 1.9e-50 202.6 129 69.8
AUR62009476 Chenopodium quinoa HOM05D006442 ORTHO05D007980 2.5e-50 202.2 129 69.8
Lalb_Chr25g0283271 Lupinus albus HOM05D006442 ORTHO05D007980 7.2e-50 200.7 130 66.9
Sed0019847 Sechium edule HOM05D006442 ORTHO05D007980 1.2e-49 199.9 134 67.2
unitig_22.g5766 Utricularia gibba HOM05D006442 ORTHO05D007980 2.1e-49 199.1 128 68.0
COL.COLO4_23906 Corchorus olitorius HOM05D006442 ORTHO05D007980 2.7e-49 198.7 137 70.1
CANSAT01G1452 Cannabis sativa HOM05D006442 ORTHO05D007980 3.6e-49 198.4 133 69.9
CDE07G0477 Ceratophyllum demersum HOM05D006442 ORTHO05D007980 3.6e-49 198.4 130 66.9
QL04p004786 Quercus lobata HOM05D006442 ORTHO05D007980 1.8e-48 196.1 173 56.6
EL10Ac2g04436 Beta vulgaris HOM05D006442 ORTHO05D007980 3.9e-48 194.9 130 66.2
CAN.G1076.12 Capsicum annuum HOM05D006442 ORTHO05D007980 8.8e-48 193.7 133 67.7
Thecc.01G414800 Theobroma cacao HOM05D006442 ORTHO05D007980 1.1e-47 193.4 132 70.5
Psat5g207000 Pisum sativum HOM05D006442 ORTHO05D007980 2.0e-47 192.6 130 64.6
THA.LOC104823024 Tarenaya hassleriana HOM05D006442 ORTHO05D007980 2.2e-46 189.1 130 64.6
PSO339G0425 Papaver somniferum HOM05D006442 ORTHO05D007980 9.1e-45 183.7 130 63.8
AUR62009477 Chenopodium quinoa HOM05D006442 ORTHO05D007980 2.0e-44 182.6 129 62.0
PSO384G2221 Papaver somniferum HOM05D006442 ORTHO05D007980 2.0e-44 182.6 130 63.8
AUR62023155 Chenopodium quinoa HOM05D006442 ORTHO05D007980 7.7e-44 180.6 129 62.8
Atru.chr11.2672 Acer truncatum HOM05D006442 ORTHO05D007980 2.5e-42 175.6 113 70.8
BcaC06g31744 Brassica carinata HOM05D006442 ORTHO05D007980 4.7e-41 171.4 131 59.5
AL8G18110 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 8.0e-41 170.6 131 58.8
Sp2g07550 Schrenkiella parvula HOM05D006442 ORTHO05D007980 8.0e-41 170.6 131 59.5
AT5G42850 Arabidopsis thaliana HOM05D006442 ORTHO05D007980 1.8e-40 169.5 131 58.8
Thhalv10003289m.g Eutrema salsugineum HOM05D006442 ORTHO05D007980 5.2e-40 167.9 131 60.3
BcaC02g10802 Brassica carinata HOM05D006442 ORTHO05D007980 2.0e-39 166.0 131 57.3
A06p48230 Brassica napus HOM05D006442 ORTHO05D007980 2.0e-39 166.0 131 57.3
C04p24990 Brassica napus HOM05D006442 ORTHO05D007980 2.0e-39 166.0 131 57.3
BolC4t23999H Brassica oleracea HOM05D006442 ORTHO05D007980 2.0e-39 166.0 131 57.3
BraA06t27691Z Brassica rapa HOM05D006442 ORTHO05D007980 2.0e-39 166.0 131 57.3
ATR0605G011 Amborella trichopoda HOM05D006442 ORTHO05D007980 2.6e-39 165.6 130 56.9
Carub.0008s0607 Capsella rubella HOM05D006442 ORTHO05D007980 2.2e-38 162.5 131 55.7
CARHR181310 Cardamine hirsuta HOM05D006442 ORTHO05D007980 2.4e-37 159.1 131 55.7
Ca_27853_v3 Cicer arietinum L. HOM05D006442 ORTHO05D007980 2.4e-37 159.1 224 38.8
Mapoly0028s0130 Marchantia polymorpha HOM05D006442 ORTHO05D007980 3.1e-37 158.7 130 54.6
SEGI_10267 Sequoiadendron giganteum HOM05D006442 ORTHO05D007980 4.1e-37 158.3 129 52.7
Glyma.08G152300 Glycine max HOM05D006442 ORTHO05D007980 5.3e-37 157.9 130 56.2
HPP92_018950 Vanilla planifolia HOM05D006442 ORTHO05D007980 7.0e-37 157.5 131 55.7
Aa31LG8G5740 Aethionema arabicum HOM05D000097 ORTHO05D000041 5.9e-36 154.5 132 56.1
vmacro13638 Vaccinium macrocarpon HOM05D006442 ORTHO05D007980 7.7e-36 154.1 153 51.0
AagrBONN_evm.TU.Sc2ySwM_117.1593 Anthoceros agrestis HOM05D006442 ORTHO05D007980 2.5e-34 149.1 129 52.7
SMO244G0064 Selaginella moellendorffii HOM05D006442 ORTHO05D007980 6.1e-33 144.4 130 50.8
Os06g0320000 Oryza sativa ssp. japonica HOM05D006442 ORTHO05D007980 8.0e-33 144.1 136 48.5
Pp3c1_3150 Physcomitrium patens HOM05D006442 ORTHO05D007980 2.3e-32 142.5 129 51.2
Zm00001eb381670 Zea mays HOM05D006442 ORTHO05D007980 3.0e-32 142.1 133 48.9
MBI01_g15755_MAGBIO Magnolia biondii HOM05D006442 ORTHO05D007980 7.0e-29 131.0 82 68.3
CsaV3_3G032370 Cucumis sativus L. HOM05D006442 ORTHO05D007980 6.5e-27 124.4 82 69.5
CAN.G37.7 Capsicum annuum HOM05D006442 ORTHO05D007980 8.5e-27 124.0 102 52.0
Nitab4.5_0004606g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 1.1e-26 123.6 83 66.3
CBR_g40140 Chara braunii HOM05D006442 ORTHO05D007980 1.5e-23 113.2 117 52.1
MD02G1317000 Malus domestica HOM05D006442 ORTHO05D007980 2.7e-20 102.4 67 68.7
ClCG10G012580 Citrullus lanatus HOM05D002156 ORTHO05D002328 5.9e-20 101.3 72 65.3
MD01G1062200 Malus domestica HOM05D006442 ORTHO05D007980 7.7e-20 100.9 72 66.7
Aa31LG8G5750 Aethionema arabicum HOM05D006442 ORTHO05D007980 7.5e-15 84.3 124 40.3
CAN.G290.22 Capsicum annuum HOM05D006442 ORTHO05D007980 7.5e-15 84.3 55 63.6
CsaV3_3G032380 Cucumis sativus L. HOM05D002156 ORTHO05D002328 4.9e-14 81.6 48 72.9
MELO3C023952.2 Cucumis melo HOM05D002156 ORTHO05D002328 2.4e-13 79.3 48 68.8
AL8G12830 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 5.0e-11 71.6 54 57.4
MD00G1052400 Malus domestica HOM05D006442 ORTHO05D007980 1.5e-10 70.1 46 65.2
Cre07.g315100 Chlamydomonas reinhardtii HOM05D006442 ORTHO05D007980 7.3e-10 67.8 70 48.6
AL5G40550 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 1.0e-08 63.9 47 59.6


User provided reference genes

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