Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 8.2e-141 503.8 275 100.0
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 6.0e-91 338.2 308 66.2
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 3.9e-82 308.9 264 70.1
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 2.7e-75 286.2 271 65.3
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 2.3e-74 283.1 260 64.6
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 3.0e-74 282.7 265 65.7
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 5.1e-74 282.0 251 67.3
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 6.6e-74 281.6 265 66.0
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 8.6e-74 281.2 265 65.7
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 4.3e-73 278.9 246 65.9
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 7.3e-73 278.1 255 63.9
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 7.3e-73 278.1 269 63.6
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 1.6e-72 276.9 263 65.0
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 2.1e-72 276.6 256 66.4
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 2.8e-72 276.2 265 64.2
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 3.6e-72 275.8 262 64.1
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 8.1e-72 274.6 265 64.5
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 2.4e-71 273.1 256 65.6
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 3.1e-71 272.7 265 63.0
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 8.9e-71 271.2 245 64.9
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 1.2e-70 270.8 251 64.9
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 1.2e-70 270.8 265 62.6
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.5e-70 270.4 262 64.1
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 2.0e-70 270.0 251 64.9
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 2.6e-70 269.6 265 63.8
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 3.4e-70 269.2 266 63.2
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 4.4e-70 268.9 261 63.6
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 4.4e-70 268.9 264 64.0
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 9.9e-70 267.7 256 65.2
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 9.9e-70 267.7 266 63.2
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.3e-69 267.3 270 61.9
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 4.9e-69 265.4 259 62.5
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 6.4e-69 265.0 267 62.2
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 8.4e-69 264.6 261 61.7
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 1.1e-68 264.2 251 64.1
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.4e-68 263.1 254 63.0
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 3.2e-68 262.7 256 63.7
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 5.4e-68 261.9 269 61.0
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 7.1e-68 261.5 254 63.0
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 1.2e-67 260.8 264 59.8
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 7.8e-67 258.1 262 61.1
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.0e-66 257.7 254 61.4
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 3.9e-66 255.8 269 59.9
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 8.7e-66 254.6 236 62.7
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 1.5e-65 253.8 267 59.2
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 3.3e-65 252.7 250 61.2
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 4.3e-65 252.3 263 59.7
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 5.6e-65 251.9 295 56.9
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 1.3e-64 250.8 248 62.9
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 2.8e-64 249.6 265 58.9
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 3.6e-64 249.2 283 55.5
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 1.4e-63 247.3 247 60.7
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 1.8e-63 246.9 260 60.4
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 5.3e-63 245.4 255 56.9
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 6.9e-63 245.0 252 58.3
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 6.9e-63 245.0 254 61.8
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 9.0e-63 244.6 250 59.6
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 1.5e-62 243.8 242 61.2
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 1.5e-62 243.8 247 61.5
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.0e-62 243.4 250 59.2
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 2.6e-62 243.0 247 58.7
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 5.8e-62 241.9 242 61.2
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.7e-61 240.4 250 58.8
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 3.8e-61 239.2 264 57.6
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 1.1e-60 237.7 240 60.4
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 1.1e-60 237.7 252 59.5
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 1.1e-60 237.7 266 58.6
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 1.4e-60 237.3 238 60.5
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 1.9e-60 236.9 250 59.6
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 2.4e-60 236.5 259 57.5
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 3.2e-60 236.1 240 60.4
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 3.2e-60 236.1 246 58.9
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 4.2e-60 235.7 241 60.2
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 5.4e-60 235.3 240 60.0
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 7.1e-60 235.0 242 59.5
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 9.3e-60 234.6 262 57.6
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 1.2e-59 234.2 267 55.8
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 1.2e-59 234.2 248 58.1
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 1.6e-59 233.8 224 62.9
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 2.1e-59 233.4 242 59.1
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 1.3e-58 230.7 250 57.2
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 1.3e-58 230.7 252 57.9
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 1.1e-57 227.6 253 58.5
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 1.5e-57 227.3 243 59.3
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 1.9e-57 226.9 221 62.9
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 1.9e-57 226.9 250 58.4
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 4.3e-57 225.7 262 58.0
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 7.3e-57 224.9 259 56.0
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 2.8e-56 223.0 253 56.5
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 4.8e-56 222.2 241 58.5
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 8.1e-56 221.5 260 55.8
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 1.1e-55 221.1 157 77.7
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 1.1e-55 221.1 243 57.6
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 1.8e-55 220.3 255 55.3
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 2.4e-55 219.9 253 56.9
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 9.0e-55 218.0 250 56.4
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 2.6e-54 216.5 244 55.3
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 3.4e-54 216.1 240 57.5
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 4.5e-54 215.7 245 55.9
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 5.8e-54 215.3 245 55.9
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 1.3e-53 214.2 252 53.6
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 1.3e-53 214.2 241 56.4
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 1.3e-53 214.2 253 52.2
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 2.2e-53 213.4 250 56.4
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 2.9e-53 213.0 243 56.0
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 4.9e-53 212.2 373 42.4
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 1.4e-52 210.7 240 55.8
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.9e-52 210.3 164 73.2
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 2.1e-51 206.8 226 60.2
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 4.6e-51 205.7 147 78.9
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 2.5e-49 199.9 262 48.9
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.3e-49 199.1 311 46.0
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 6.9e-47 191.8 190 62.6
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 1.3e-45 187.6 215 58.1
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 8.4e-45 184.9 241 53.1
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 5.1e-42 175.6 274 46.0
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 9.0e-39 164.9 244 45.9
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 3.8e-37 159.5 216 50.0
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 9.3e-36 154.8 174 57.5
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 3.0e-34 149.8 239 46.4
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 3.0e-34 149.8 279 39.4
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 1.5e-33 147.5 109 75.2
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 5.7e-33 145.6 201 51.7
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.1e-31 141.4 203 52.2
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 2.2e-29 133.7 278 41.7
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 2.9e-29 133.3 93 76.3
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.9e-28 130.6 179 53.1
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 9.4e-28 128.3 175 52.0
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 7.9e-27 125.2 122 59.0
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 2.0e-25 120.6 179 50.8
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 4.4e-17 92.8 107 52.3
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 1.4e-15 87.8 219 37.4
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 9.1e-15 85.1 123 41.5
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 9.1e-15 85.1 148 44.6
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 2.0e-14 84.0 71 62.0
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 3.5e-14 83.2 56 78.6
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 3.6e-11 73.2 61 68.9
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 3.0e-10 70.1 53 71.7
Duzib205G1338 Durio zibethinus HOM05D005135 ORTHO05D005810 1.1e-09 68.2 130 42.3
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.5e-09 67.8 41 73.2
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 3.3e-09 66.6 63 57.1
Duzib205G1376 Durio zibethinus HOM05D005135 ORTHO05D005810 5.7e-09 65.9 88 48.9
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 6.3e-08 62.4 172 34.9
Cpa.g.sc4.198 Carica papaya HOM05D005135 ORTHO05D005810 4.1e-07 59.7 81 48.1
PRCOL_00003096 Prasinoderma coloniale HOM05D005135 ORTHO05D005810 4.5e-06 56.2 100 40.0


User provided reference genes

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