Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 2.5e-182 642.1 358 100.0
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 3.6e-72 276.2 331 57.7
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 3.1e-63 246.5 380 46.8
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 5.2e-63 245.7 362 51.9
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 5.2e-63 245.7 362 51.9
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 4.4e-62 242.7 389 45.5
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 8.7e-58 228.4 376 46.0
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 9.0e-55 218.4 366 44.8
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 4.4e-54 216.1 383 46.2
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 5.8e-54 215.7 374 44.4
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 2.4e-52 210.3 375 45.9
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 1.6e-51 207.6 350 45.1
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 2.1e-51 207.2 372 44.6
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 4.6e-51 206.1 375 44.3
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 7.8e-51 205.3 375 44.0
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.3e-50 203.8 365 42.7
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.3e-50 203.8 365 42.7
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.5e-49 201.1 362 45.6
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 4.3e-49 199.5 346 44.2
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 7.3e-49 198.7 364 40.7
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 7.3e-49 198.7 338 42.0
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.2e-46 191.4 374 44.4
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 1.5e-46 191.0 395 42.3
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 2.6e-46 190.3 365 41.9
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 2.6e-46 190.3 365 41.9
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 3.4e-46 189.9 363 40.8
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 5.8e-46 189.1 365 44.7
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 5.8e-46 189.1 364 43.7
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 9.9e-46 188.3 363 43.0
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 6.4e-45 185.7 354 42.1
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 8.4e-45 185.3 334 43.4
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 1.1e-44 184.9 373 40.2
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.9e-44 184.1 328 46.3
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 5.4e-44 182.6 359 41.2
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 1.2e-43 181.4 386 40.9
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 3.5e-43 179.9 377 42.2
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 3.5e-43 179.9 377 41.9
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.3e-42 177.2 364 39.0
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 3.9e-42 176.4 362 43.9
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 3.9e-42 176.4 386 41.5
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 6.7e-42 175.6 375 37.6
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 1.1e-41 174.9 380 38.4
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 2.5e-41 173.7 362 41.2
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 2.5e-41 173.7 345 38.6
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 3.3e-41 173.3 383 38.9
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 9.6e-41 171.8 355 40.6
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 9.6e-41 171.8 409 39.4
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 2.8e-40 170.2 391 40.2
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 2.8e-40 170.2 380 40.3
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 3.7e-40 169.9 378 39.7
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 6.2e-40 169.1 378 39.4
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 1.1e-39 168.3 378 39.4
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 1.1e-39 168.3 356 37.4
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 1.8e-39 167.5 372 41.4
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 2.4e-39 167.2 382 36.1
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 3.1e-39 166.8 346 38.7
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 3.1e-39 166.8 378 39.2
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 3.1e-39 166.8 366 41.0
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 5.3e-39 166.0 373 40.8
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 6.9e-39 165.6 354 42.9
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 1.2e-38 164.9 382 39.8
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 3.4e-38 163.3 333 42.6
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 3.4e-38 163.3 358 37.2
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 3.4e-38 163.3 358 37.2
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 7.6e-38 162.2 360 41.4
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 9.9e-38 161.8 384 38.3
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 9.9e-38 161.8 356 40.4
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 1.7e-37 161.0 345 40.0
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 1.7e-37 161.0 380 37.6
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 1.7e-37 161.0 367 39.5
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 1.7e-37 161.0 368 40.2
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 1.7e-37 161.0 362 38.7
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 2.9e-37 160.2 363 42.4
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 8.4e-37 158.7 337 43.6
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 8.4e-37 158.7 387 35.9
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.1e-36 158.3 392 37.2
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.4e-36 157.9 391 40.7
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.4e-36 157.9 388 41.5
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 1.4e-36 157.9 366 38.5
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 2.4e-36 157.1 266 42.9
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 4.2e-36 156.4 390 40.8
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 7.1e-36 155.6 323 44.0
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 1.2e-35 154.8 323 44.3
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 1.2e-35 154.8 336 37.2
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 1.6e-35 154.5 401 35.4
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 4.6e-35 152.9 330 42.1
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 7.9e-35 152.1 360 36.1
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 3.9e-34 149.8 390 35.4
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 3.9e-34 149.8 283 41.7
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 5.1e-34 149.4 362 39.8
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 2.5e-33 147.1 382 37.4
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 4.3e-33 146.4 386 36.8
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 4.3e-33 146.4 384 38.8
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 5.6e-33 146.0 357 34.5
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 5.6e-33 146.0 305 36.4
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 7.4e-33 145.6 386 38.1
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.3e-32 144.8 328 37.8
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 1.6e-32 144.4 367 40.6
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 2.1e-32 144.1 330 38.8
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 4.8e-32 142.9 306 42.8
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 6.2e-32 142.5 376 38.3
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 8.2e-32 142.1 305 35.7
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 8.2e-32 142.1 278 48.9
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 2.0e-30 137.5 306 42.5
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 5.8e-30 136.0 366 38.5
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.0e-29 135.2 387 33.3
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 4.9e-29 132.9 342 36.3
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 4.9e-29 132.9 334 38.9
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 4.9e-29 132.9 334 38.3
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.1e-28 131.7 334 38.0
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 1.4e-28 131.3 251 36.3
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 3.2e-28 130.2 305 39.7
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 4.2e-28 129.8 351 34.8
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 4.2e-28 129.8 185 52.4
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 9.3e-28 128.6 298 44.0
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 3.5e-27 126.7 367 36.2
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 6.0e-27 125.9 354 34.5
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 1.8e-26 124.4 314 35.0
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 1.1e-25 121.7 293 38.6
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 3.3e-25 120.2 343 34.1
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 6.3e-24 115.9 299 43.5
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 1.4e-23 114.8 360 33.1
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 2.4e-23 114.0 318 40.9
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 4.1e-23 113.2 348 35.1
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 9.0e-23 112.1 294 38.8
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.2e-22 111.7 350 33.4
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 1.2e-22 111.7 363 29.5
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.3e-21 108.2 155 58.7
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 1.7e-21 107.8 264 41.3
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 1.7e-21 107.8 193 43.5
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.2e-21 107.5 348 31.9
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 3.8e-21 106.7 264 40.5
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 8.5e-21 105.5 290 34.1
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.4e-20 104.8 285 35.1
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 4.2e-20 103.2 266 37.2
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 4.6e-19 99.8 310 37.1
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 1.5e-17 94.7 258 33.7
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 2.5e-17 94.0 276 32.2
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 5.7e-17 92.8 258 33.3
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 1.3e-16 91.7 215 45.6
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 2.2e-16 90.9 329 30.7
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 6.3e-16 89.4 151 50.3
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 1.0e-13 82.0 269 31.2
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 2.2e-13 80.9 282 30.1
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 5.0e-13 79.7 277 30.3
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 5.0e-13 79.7 268 32.8
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 5.0e-13 79.7 277 30.3
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 4.2e-12 76.6 265 31.3
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 4.2e-12 76.6 283 29.3
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.6e-11 74.7 295 30.2
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 6.1e-11 72.8 311 30.5
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 1.0e-10 72.0 266 33.5
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 6.7e-10 69.3 264 32.6
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 6.7e-10 69.3 319 26.6
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 2.6e-09 67.4 311 30.2
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 7.4e-09 65.9 260 31.9
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 2.0e-06 57.8 259 31.3
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 2.0e-06 57.8 259 31.3


User provided reference genes

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