Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 1.2e-101 373.2 195 100.0
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 2.9e-63 245.7 201 69.7
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 7.1e-46 188.0 214 57.0
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 4.0e-41 172.2 210 53.8
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 7.6e-40 167.9 210 54.8
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 6.2e-34 148.3 212 50.0
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 6.2e-34 148.3 212 50.0
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 2.4e-33 146.4 199 51.3
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 2.6e-32 142.9 208 50.5
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 9.9e-32 141.0 191 52.4
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 2.9e-31 139.4 210 47.1
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 1.4e-30 137.1 212 47.2
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 4.2e-30 135.6 211 46.4
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 7.1e-30 134.8 211 47.9
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.6e-29 133.7 211 46.9
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 3.5e-29 132.5 206 47.6
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.0e-28 131.0 212 45.3
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.0e-28 131.0 212 45.3
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 1.3e-28 130.6 206 47.6
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 1.7e-28 130.2 203 49.3
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.7e-28 130.2 204 48.0
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 2.3e-28 129.8 208 47.1
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 5.1e-28 128.6 208 46.2
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 6.6e-28 128.3 211 46.4
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 6.6e-28 128.3 209 46.9
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 8.7e-28 127.9 207 47.8
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 1.1e-27 127.5 200 47.0
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 1.5e-27 127.1 207 48.3
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 2.5e-27 126.3 212 47.6
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 4.3e-27 125.6 205 44.9
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 9.6e-27 124.4 210 46.2
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 1.3e-26 124.0 214 47.7
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 1.6e-26 123.6 205 44.4
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 2.8e-26 122.9 200 48.0
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 3.6e-26 122.5 203 47.3
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 6.2e-26 121.7 204 48.5
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 8.1e-26 121.3 209 44.0
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 1.1e-25 120.9 199 47.7
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 1.4e-25 120.6 208 44.7
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 1.4e-25 120.6 206 45.6
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 1.8e-25 120.2 212 45.3
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 2.4e-25 119.8 218 45.9
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 3.1e-25 119.4 194 46.9
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 3.1e-25 119.4 191 48.2
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 4.0e-25 119.0 211 45.0
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 5.3e-25 118.6 196 46.9
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 5.3e-25 118.6 210 43.3
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 6.9e-25 118.2 196 47.4
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 9.0e-25 117.9 196 47.4
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 1.2e-24 117.5 197 48.2
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.2e-24 117.5 201 44.8
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 1.5e-24 117.1 201 47.8
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.5e-24 117.1 200 45.0
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 3.4e-24 115.9 202 46.5
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 3.4e-24 115.9 210 41.4
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 4.5e-24 115.5 204 44.6
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 4.5e-24 115.5 200 44.5
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 5.8e-24 115.2 208 43.8
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 7.6e-24 114.8 201 41.8
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 7.6e-24 114.8 194 46.9
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 7.6e-24 114.8 202 45.0
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 2.2e-23 113.2 187 47.1
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 2.2e-23 113.2 210 42.4
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 2.2e-23 113.2 188 44.1
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 2.9e-23 112.8 202 46.5
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 2.9e-23 112.8 194 46.4
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 2.9e-23 112.8 212 43.9
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 2.9e-23 112.8 201 47.8
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 2.9e-23 112.8 201 44.8
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 3.8e-23 112.5 198 46.0
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 8.4e-23 111.3 181 46.4
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 8.4e-23 111.3 209 43.5
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.4e-22 110.5 210 40.5
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 1.9e-22 110.2 200 43.0
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 1.9e-22 110.2 199 42.7
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 1.9e-22 110.2 199 43.2
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.4e-22 109.8 210 40.5
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 2.4e-22 109.8 204 42.2
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 4.2e-22 109.0 186 47.8
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 1.2e-21 107.5 194 44.3
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 1.2e-21 107.5 203 45.8
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 2.1e-21 106.7 194 43.3
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 2.1e-21 106.7 208 42.8
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 3.5e-21 105.9 208 42.3
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 6.0e-21 105.1 206 42.7
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 6.0e-21 105.1 212 42.0
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 1.0e-20 104.4 199 43.7
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.0e-20 104.4 183 45.4
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 1.0e-20 104.4 194 46.9
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 1.0e-20 104.4 211 41.2
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 1.8e-20 103.6 180 44.4
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 1.8e-20 103.6 211 41.2
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 2.3e-20 103.2 193 45.1
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 3.9e-20 102.4 205 41.0
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 3.9e-20 102.4 205 42.9
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 3.9e-20 102.4 190 42.1
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 5.1e-20 102.1 183 44.8
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 8.7e-20 101.3 206 42.7
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.1e-19 100.9 206 42.2
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.1e-19 100.9 206 42.2
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 2.5e-19 99.8 189 43.9
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 3.3e-19 99.4 149 53.7
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 3.3e-19 99.4 183 44.3
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 3.3e-19 99.4 192 41.1
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 3.3e-19 99.4 196 41.8
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 9.6e-19 97.8 199 42.7
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 1.3e-18 97.4 185 40.0
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 1.3e-18 97.4 189 43.9
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 1.6e-18 97.1 210 39.0
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 1.6e-18 97.1 192 43.8
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 1.6e-18 97.1 185 41.6
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 2.8e-18 96.3 209 41.6
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 2.8e-18 96.3 209 41.6
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 2.8e-18 96.3 198 43.4
CARHR265540 Cardamine hirsuta HOM05D002831 ORTHO05D004341 3.7e-18 95.9 97 63.9
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 8.1e-18 94.7 89 69.7
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 8.1e-18 94.7 89 69.7
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 8.1e-18 94.7 214 39.3
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 2.4e-17 93.2 101 58.4
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 2.4e-17 93.2 180 41.1
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 3.1e-17 92.8 187 40.1
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 6.9e-17 91.7 177 44.1
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 6.9e-17 91.7 73 76.7
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 1.5e-16 90.5 113 55.8
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 7.1e-14 81.6 209 35.4
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 1.2e-13 80.9 210 37.1
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 2.7e-13 79.7 81 66.7
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 7.9e-13 78.2 202 37.1
Carub.0007s1527 Capsella rubella HOM05D002831 ORTHO05D004341 1.3e-12 77.4 70 72.9
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 1.8e-12 77.0 211 36.0
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 1.8e-12 77.0 180 38.3
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 2.3e-12 76.6 208 36.5
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 3.9e-12 75.9 149 39.6
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 6.7e-12 75.1 208 36.1
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 6.7e-12 75.1 188 35.1
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 8.7e-12 74.7 212 34.4
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 7.4e-11 71.6 190 37.4
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 7.4e-11 71.6 187 36.4
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 7.4e-11 71.6 187 36.9
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 1.6e-10 70.5 205 33.7
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 2.1e-10 70.1 188 35.6
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 2.1e-10 70.1 186 39.2
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 2.8e-10 69.7 205 33.2
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 3.7e-10 69.3 176 40.9
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 3.7e-10 69.3 179 38.0
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 6.2e-10 68.6 180 36.1
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 6.2e-10 68.6 203 37.4
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 1.4e-09 67.4 182 38.5
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 1.4e-09 67.4 202 34.7
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 2.4e-09 66.6 210 35.2
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 4.0e-09 65.9 176 36.9
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 9.0e-09 64.7 208 32.7
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 2.0e-08 63.5 147 35.4
Lsat_1_v5_gn_9_56481 Lactuca sativa HOM05D002831 ORTHO05D004341 3.4e-08 62.8 201 34.3
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 4.5e-08 62.4 211 30.8
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.3e-07 60.8 212 33.0
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 1.7e-07 60.5 176 35.8
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.7e-07 60.5 204 33.3
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.2e-07 60.1 212 32.5
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 2.2e-07 60.1 211 31.8
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 4.9e-07 58.9 212 32.5
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 6.5e-07 58.5 85 54.1
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 8.4e-07 58.2 212 32.5
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 8.4e-07 58.2 212 32.5
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 8.4e-07 58.2 212 32.1
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 1.1e-06 57.8 97 47.4
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 1.1e-06 57.8 176 31.8
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 1.9e-06 57.0 193 32.6
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 4.2e-06 55.8 134 35.8
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 5.5e-06 55.5 208 37.0
BcaB01g02976 Brassica carinata HOM05D003229 ORTHO05D003835 7.1e-06 55.1 48 75.0


User provided reference genes

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