Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 9.5e-116 420.2 219 100.0
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 5.4e-95 351.3 225 81.8
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 1.2e-94 350.1 220 85.0
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 1.9e-92 342.8 225 82.2
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 2.7e-86 322.4 222 77.0
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 1.0e-85 320.5 225 77.3
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 1.3e-85 320.1 213 79.8
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 3.0e-85 318.9 220 78.6
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 3.9e-85 318.5 220 77.7
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 1.9e-84 316.2 222 74.3
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 4.3e-84 315.1 218 75.2
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 4.3e-84 315.1 222 77.0
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 5.6e-84 314.7 205 80.0
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 1.3e-83 313.5 221 75.1
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 1.3e-83 313.5 222 75.7
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 6.2e-83 311.2 228 74.1
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 8.1e-83 310.8 218 76.1
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 1.1e-82 310.5 221 73.3
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 1.8e-82 309.7 205 78.5
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 1.8e-82 309.7 205 78.5
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 6.9e-82 307.8 217 76.5
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 1.2e-81 307.0 195 80.0
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.2e-81 307.0 204 76.0
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 3.4e-81 305.4 222 72.1
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 7.6e-81 304.3 190 83.7
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 7.6e-81 304.3 228 73.7
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 9.9e-81 303.9 218 74.3
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 1.3e-80 303.5 216 75.5
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 1.3e-80 303.5 204 75.0
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 1.3e-80 303.5 223 73.1
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 3.8e-80 302.0 203 78.8
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 3.8e-80 302.0 204 74.5
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 3.8e-80 302.0 217 74.7
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 4.9e-80 301.6 216 74.5
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 4.9e-80 301.6 218 72.0
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 6.4e-80 301.2 230 71.7
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 6.4e-80 301.2 222 76.1
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 1.4e-79 300.1 220 74.5
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.4e-79 299.3 199 76.9
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 3.2e-79 298.9 222 71.6
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 4.2e-79 298.5 219 74.4
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 5.4e-79 298.1 202 77.2
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.2e-78 297.0 202 76.7
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.6e-78 296.6 202 76.7
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 2.1e-78 296.2 221 72.4
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 3.5e-78 295.4 194 76.3
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 6.0e-78 294.7 180 83.9
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 6.0e-78 294.7 223 70.0
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 7.9e-78 294.3 217 71.0
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.0e-77 293.9 199 75.9
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 1.0e-77 293.9 218 71.6
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 1.7e-77 293.1 221 69.2
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 2.3e-77 292.7 199 72.9
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 3.0e-77 292.4 223 71.7
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 5.1e-77 291.6 208 74.0
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 6.6e-77 291.2 231 68.8
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 1.5e-76 290.0 207 73.4
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 1.9e-76 289.7 196 76.5
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 4.3e-76 288.5 194 74.7
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 9.6e-76 287.3 224 71.4
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 4.8e-75 285.0 220 70.0
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 9.0e-74 280.8 178 80.3
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 5.8e-73 278.1 218 70.2
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 1.3e-72 276.9 216 67.1
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 2.2e-72 276.2 172 82.6
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 3.8e-72 275.4 216 68.1
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 1.1e-71 273.9 208 68.8
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 1.4e-71 273.5 217 64.5
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 1.4e-71 273.5 206 69.4
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 1.9e-71 273.1 217 65.0
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 1.9e-71 273.1 175 82.9
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 4.2e-71 271.9 220 65.9
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 4.2e-71 271.9 206 68.4
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 5.5e-71 271.6 214 66.4
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 7.1e-71 271.2 216 65.3
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.2e-70 270.4 202 72.3
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 1.2e-70 270.4 219 67.6
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 2.1e-70 269.6 216 66.2
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 2.7e-70 269.2 175 81.7
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 1.3e-69 266.9 206 68.9
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 1.3e-69 266.9 216 66.2
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 1.3e-69 266.9 216 66.2
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 1.3e-69 266.9 216 66.2
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 1.3e-69 266.9 209 68.4
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 2.3e-69 266.2 178 75.3
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 2.3e-69 266.2 178 75.3
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 3.0e-69 265.8 219 65.3
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 2.5e-68 262.7 216 64.8
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 2.5e-68 262.7 216 64.8
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 4.3e-68 261.9 185 71.4
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 4.3e-68 261.9 216 64.4
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 1.3e-67 260.4 215 65.1
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 4.8e-67 258.5 209 64.1
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 6.2e-67 258.1 195 73.3
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 1.8e-66 256.5 189 73.0
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 2.4e-66 256.1 171 76.0
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 4.0e-66 255.4 181 69.6
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 7.6e-65 251.1 194 69.6
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 1.3e-64 250.4 169 73.4
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 4.6e-62 241.9 215 62.3
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 1.3e-61 240.4 208 63.9
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 1.3e-61 240.4 208 63.9
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 3.0e-61 239.2 221 63.8
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 1.5e-60 236.9 217 61.3
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 4.3e-60 235.3 155 80.6
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 1.3e-59 233.8 171 69.6
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 2.1e-59 233.0 164 73.8
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 2.1e-59 233.0 164 73.8
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 3.7e-59 232.3 164 73.2
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 5.9e-57 224.9 155 72.3
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 1.3e-56 223.8 156 73.1
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 1.7e-56 223.4 155 71.0
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 2.5e-55 219.5 155 73.5
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 4.2e-55 218.8 155 71.6
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 5.5e-55 218.4 157 73.9
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 9.3e-55 217.6 152 71.7
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 1.6e-54 216.9 156 72.4
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 7.9e-54 214.5 175 61.7
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 3.9e-53 212.2 155 69.7
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 5.1e-53 211.8 155 72.3
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 1.9e-52 209.9 156 67.3
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 2.5e-52 209.5 159 66.7
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 4.3e-52 208.8 137 78.8
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 7.4e-52 208.0 145 71.7
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 1.3e-51 207.2 148 72.3
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 4.8e-51 205.3 125 86.4
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 6.3e-51 204.9 155 65.8
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 1.5e-49 200.3 171 62.0
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 7.7e-49 198.0 151 67.5
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 1.3e-48 197.2 144 75.7
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 6.5e-48 194.9 177 61.6
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 6.5e-48 194.9 177 61.6
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 1.2e-46 190.7 212 50.5
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 2.7e-46 189.5 186 54.3
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.0e-45 187.6 118 83.1
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 2.4e-42 176.4 214 49.1
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 2.4e-42 176.4 183 50.3
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 3.1e-42 176.0 210 50.0
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 5.9e-41 171.8 205 45.9
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 1.0e-40 171.0 204 49.5
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 1.7e-40 170.2 137 64.2
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 2.9e-40 169.5 106 82.1
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 8.5e-40 167.9 106 81.1
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 1.3e-35 154.1 108 75.9
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 4.1e-34 149.1 157 49.0
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 1.2e-28 131.0 87 72.4
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 2.5e-23 113.2 207 35.7
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 3.0e-21 106.3 156 44.2
CSS0007759 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 2.0e-17 93.6 87 56.3
CSS0011379 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 3.5e-17 92.8 71 70.4
CSS0022164 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 3.5e-17 92.8 71 70.4


User provided reference genes

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