Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold10G05208 Striga asiatica HOM05D006274 ORTHO05D007782 1.5e-98 362.8 185 100.0
SalBow6G3082 Salvia bowleyana HOM05D006274 ORTHO05D007782 1.2e-84 316.6 185 87.6
MSTRG.19530 Avicennia marina HOM05D006274 ORTHO05D007782 2.1e-79 299.3 186 83.9
Migut.J00587 Erythranthe guttata HOM05D006274 ORTHO05D007782 3.5e-79 298.5 185 86.5
TWI56G1401 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 6.9e-75 284.3 184 79.3
Haze_22342 Corylus avellana HOM05D006274 ORTHO05D007782 5.8e-74 281.2 180 79.4
Cfa013698 Carpinus fangiana HOM05D006274 ORTHO05D007782 9.9e-74 280.4 180 79.4
Cc10_g15630 Coffea canephora HOM05D006274 ORTHO05D007782 3.8e-73 278.5 186 79.0
Oeu024592.1 Olea europaea HOM05D006274 ORTHO05D007782 1.4e-72 276.6 186 78.5
QL09p017221 Quercus lobata HOM05D006274 ORTHO05D007782 1.2e-71 273.5 181 79.0
CiPaw.07G167900 Carya illinoinensis HOM05D006274 ORTHO05D007782 4.6e-71 271.6 180 77.8
TAR381G0542 Trochodendron aralioides HOM05D006274 ORTHO05D007782 1.0e-70 270.4 183 76.5
PGR031G0701 Punica granatum HOM05D006274 ORTHO05D007782 4.3e-69 265.0 181 76.8
Thecc.08G068200 Theobroma cacao HOM05D006274 ORTHO05D007782 9.6e-69 263.8 185 74.1
Dinv44839 Davidia involucrata HOM05D006274 ORTHO05D007782 1.8e-67 259.6 193 72.0
Potri.002G103700 Populus trichocarpa HOM05D006274 ORTHO05D007782 1.2e-66 256.9 186 70.4
Duzib116G0317 Durio zibethinus HOM05D006274 ORTHO05D007782 2.0e-66 256.1 185 71.4
GSVIVG01009140001 Vitis vinifera HOM05D006274 ORTHO05D007782 2.0e-66 256.1 161 80.7
CSS0045542 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 3.4e-66 255.4 187 71.1
CSS0028463 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 5.8e-66 254.6 188 71.3
Hund27007 Selenicereus undatus HOM05D006274 ORTHO05D007782 5.8e-66 254.6 181 76.2
Sc01g0001050 Simmondsia chinensis HOM05D006274 ORTHO05D007782 5.8e-66 254.6 183 71.6
Manes.18G061000 Manihot esculenta HOM05D006274 ORTHO05D007782 7.6e-66 254.2 182 72.0
Actinidia19642 Actinidia chinensis HOM05D006274 ORTHO05D007782 9.9e-66 253.8 187 70.1
Dinv42635 Davidia involucrata HOM05D006274 ORTHO05D007782 1.3e-65 253.4 189 74.6
Hma1.2p1_0010F.1_g006970 Hydrangea macrophylla HOM05D006274 ORTHO05D007782 2.2e-65 252.7 187 73.3
Sed0009042 Sechium edule HOM05D006274 ORTHO05D007782 2.4e-64 249.2 178 73.0
Nn5g29933 Nelumbo nucifera HOM05D006274 ORTHO05D007782 5.5e-64 248.1 176 72.2
PGSC0003DMG400012912 Solanum tuberosum HOM05D006274 ORTHO05D007782 7.1e-64 247.7 184 71.2
MBI02_g18284_MAGBIO Magnolia biondii HOM05D006274 ORTHO05D007782 6.0e-63 244.6 189 68.3
Prupe.1G528000 Prunus persica HOM05D006274 ORTHO05D007782 7.9e-63 244.2 184 71.2
Solyc04g076050.4 Solanum lycopersicum HOM05D006274 ORTHO05D007782 1.0e-62 243.8 180 71.1
CsaV3_2G030110 Cucumis sativus L. HOM05D006274 ORTHO05D007782 2.3e-62 242.7 190 68.4
Ciclev10002605m.g Citrus clementina HOM05D006274 ORTHO05D007782 3.9e-62 241.9 186 69.4
Sopen00g007030 Solanum pennellii HOM05D006274 ORTHO05D007782 8.7e-62 240.7 181 70.2
Sopen00g007710 Solanum pennellii HOM05D006274 ORTHO05D007782 8.7e-62 240.7 181 70.2
MD15G1382000 Malus domestica HOM05D006274 ORTHO05D007782 1.9e-61 239.6 184 69.0
CDE10G0432 Ceratophyllum demersum HOM05D006274 ORTHO05D007782 1.6e-60 236.5 169 70.4
MD08G1193500 Malus domestica HOM05D006274 ORTHO05D007782 1.6e-60 236.5 184 68.5
Glyma.06G094500 Glycine max HOM05D006274 ORTHO05D007782 2.1e-60 236.1 180 70.6
Nitab4.5_0010618g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 2.8e-60 235.7 184 70.1
vmacro04670 Vaccinium macrocarpon HOM05D006274 ORTHO05D007782 2.8e-60 235.7 193 66.3
EL10Ac1g01111 Beta vulgaris HOM05D006274 ORTHO05D007782 3.7e-60 235.3 181 71.8
Thhalv10017289m.g Eutrema salsugineum HOM05D006274 ORTHO05D007782 4.8e-60 235.0 186 66.7
unitig_26.g9169 Utricularia gibba HOM05D006274 ORTHO05D007782 6.2e-60 234.6 188 70.2
A05p11860 Brassica napus HOM05D006274 ORTHO05D007782 8.1e-60 234.2 188 67.0
THA.LOC104814210 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 1.1e-59 233.8 182 67.0
C04p15430 Brassica napus HOM05D006274 ORTHO05D007782 1.4e-59 233.4 188 67.6
BcaB02g10587 Brassica carinata HOM05D006274 ORTHO05D007782 1.8e-59 233.0 187 67.4
BolC4t23114H Brassica oleracea HOM05D006274 ORTHO05D007782 2.4e-59 232.6 188 67.0
ClCG08G011520 Citrullus lanatus HOM05D006274 ORTHO05D007782 2.4e-59 232.6 202 62.9
Eucgr.F02129 Eucalyptus grandis HOM05D006274 ORTHO05D007782 3.1e-59 232.3 177 69.5
Glyma.04G092700 Glycine max HOM05D006274 ORTHO05D007782 4.0e-59 231.9 182 68.7
BcaC02g11449 Brassica carinata HOM05D006274 ORTHO05D007782 1.2e-58 230.3 190 66.3
Gohir.D06G032400 Gossypium hirsutum HOM05D006274 ORTHO05D007782 2.0e-58 229.6 185 65.4
BraA05t20127Z Brassica rapa HOM05D006274 ORTHO05D007782 2.6e-58 229.2 188 66.5
FAN04G0860 Fragaria x ananassa HOM05D006274 ORTHO05D007782 3.4e-58 228.8 185 65.9
Gorai.010G035700 Gossypium raimondii HOM05D006274 ORTHO05D007782 1.0e-57 227.3 185 64.9
FvH4_5g35790 Fragaria vesca HOM05D006274 ORTHO05D007782 1.3e-57 226.9 185 65.4
Lsat_1_v5_gn_9_74940 Lactuca sativa HOM05D006274 ORTHO05D007782 3.8e-57 225.3 183 68.9
Lj1g0015671 Lotus japonicus HOM05D006274 ORTHO05D007782 3.8e-57 225.3 183 67.2
Ca_22436_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 4.9e-57 224.9 180 66.7
Sp4g16090 Schrenkiella parvula HOM05D006274 ORTHO05D007782 4.9e-57 224.9 186 65.6
AT2G33740 Arabidopsis thaliana HOM05D006274 ORTHO05D007782 8.4e-57 224.2 187 65.8
Carub.0004s1538 Capsella rubella HOM05D006274 ORTHO05D007782 8.4e-57 224.2 185 65.9
Lalb_Chr08g0242401 Lupinus albus HOM05D006274 ORTHO05D007782 8.4e-57 224.2 180 66.1
Aa31LG9G13640 Aethionema arabicum HOM05D006274 ORTHO05D007782 1.4e-56 223.4 183 65.0
FAN18G0017 Fragaria x ananassa HOM05D006274 ORTHO05D007782 1.4e-56 223.4 185 64.9
VMungo1309G0647 Vigna mungo HOM05D006274 ORTHO05D007782 1.9e-56 223.0 182 66.5
CARHR127760 Cardamine hirsuta HOM05D006274 ORTHO05D007782 3.2e-56 222.2 186 64.0
Phvul.009G143300 Phaseolus vulgaris HOM05D006274 ORTHO05D007782 4.2e-56 221.9 180 65.6
AL4G29430 Arabidopsis lyrata HOM05D006274 ORTHO05D007782 5.5e-56 221.5 184 64.7
RcHm_v2.0_Chr7g0237451 Rosa chinensis HOM05D006274 ORTHO05D007782 9.3e-56 220.7 175 67.4
MELO3C011069.2 Cucumis melo HOM05D006274 ORTHO05D007782 1.2e-55 220.3 208 61.1
PSO210G3104 Papaver somniferum HOM05D006274 ORTHO05D007782 3.5e-55 218.8 181 66.9
ATR0022G028 Amborella trichopoda HOM05D006274 ORTHO05D007782 4.6e-55 218.4 176 66.5
THA.LOC104820685 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 6.0e-55 218.0 188 64.4
Hund16871 Selenicereus undatus HOM05D006274 ORTHO05D007782 7.9e-55 217.6 182 68.7
PSO170G6492 Papaver somniferum HOM05D006274 ORTHO05D007782 6.7e-54 214.5 186 65.6
TWI12G0161 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 8.7e-54 214.2 130 82.3
Aqoxy5G01327 Aquilegia oxysepala HOM05D006274 ORTHO05D007782 1.9e-53 213.0 184 64.7
ECA232G3909 Erigeron canadensis HOM05D006274 ORTHO05D007782 2.5e-53 212.6 184 65.8
TPR.G26025 Trifolium pratense HOM05D006274 ORTHO05D007782 4.3e-53 211.8 181 65.2
Gohir.A05G218200 Gossypium hirsutum HOM05D006274 ORTHO05D007782 1.3e-52 210.3 185 61.6
Medtr3g100630 Medicago truncatula HOM05D006274 ORTHO05D007782 2.1e-52 209.5 188 63.3
HanXRQChr09g0249401 Helianthus annuus HOM05D006274 ORTHO05D007782 4.8e-52 208.4 179 63.7
Peaxi162Scf00281g00415 Petunia axillaris HOM05D006274 ORTHO05D007782 8.2e-52 207.6 185 65.4
Sabra02G0081200 Salix brachista HOM05D006274 ORTHO05D007782 8.2e-52 207.6 230 52.6
Gorai.009G231100 Gossypium raimondii HOM05D006274 ORTHO05D007782 1.4e-51 206.8 185 60.5
Nitab4.5_0001507g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 6.9e-51 204.5 184 62.5
Cpa.g.sc309.7 Carica papaya HOM05D006274 ORTHO05D007782 3.4e-50 202.2 182 60.4
Ca_15989_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 3.4e-50 202.2 164 65.9
Zm00001eb006540 Zea mays HOM05D006274 ORTHO05D007782 5.9e-50 201.4 169 63.3
Gohir.A06G032628 Gossypium hirsutum HOM05D006274 ORTHO05D007782 7.6e-50 201.1 169 64.5
Nn1g05513 Nelumbo nucifera HOM05D006274 ORTHO05D007782 3.8e-49 198.7 182 61.0
Actinidia29612 Actinidia chinensis HOM05D006274 ORTHO05D007782 6.5e-49 198.0 188 60.6
MSTRG.6044 Avicennia marina HOM05D006274 ORTHO05D007782 8.5e-49 197.6 113 87.6
AUR62019013 Chenopodium quinoa HOM05D006274 ORTHO05D007782 2.5e-48 196.1 113 86.7
Os03g0186950 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 3.2e-48 195.7 168 61.9
AUR62027854 Chenopodium quinoa HOM05D006274 ORTHO05D007782 4.2e-48 195.3 113 86.7
Sopen00g004300 Solanum pennellii HOM05D006274 ORTHO05D007782 7.9e-47 191.0 112 84.8
DCAR_012863 Daucus carota HOM05D006274 ORTHO05D007782 3.9e-46 188.7 113 81.4
Os10g0378300 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 1.6e-44 183.3 112 78.6
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 2.8e-44 182.6 158 62.7
Gohir.D05G223833 Gossypium hirsutum HOM05D006274 ORTHO05D007782 1.1e-43 180.6 185 55.7
CAN.G1658.2 Capsicum annuum HOM05D006274 ORTHO05D007782 1.8e-43 179.9 118 78.8
arahy.Tifrunner.gnm1.ann1.SMA5HD Arachis hypogaea HOM05D006274 ORTHO05D007782 3.2e-40 169.1 150 63.3
arahy.Tifrunner.gnm1.ann1.44X20L Arachis hypogaea HOM05D006274 ORTHO05D007782 4.2e-40 168.7 150 63.3
FAN13G2708 Fragaria x ananassa HOM05D006274 ORTHO05D007782 3.7e-36 155.6 92 79.3
FAN08G3216 Fragaria x ananassa HOM05D006274 ORTHO05D007782 3.1e-35 152.5 92 78.3
CANSAT64G0910 Cannabis sativa HOM05D006274 ORTHO05D007782 9.1e-35 151.0 120 65.0
Atru.chr13.1045 Acer truncatum HOM05D006274 ORTHO05D007782 2.6e-34 149.4 102 77.5
SMO119G0339 Selaginella moellendorffii HOM05D006274 ORTHO05D007782 5.9e-34 148.3 110 63.6
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 5.9e-34 148.3 88 83.0
Sed0010188 Sechium edule HOM05D006274 ORTHO05D007782 5.0e-33 145.2 92 79.3
Mapoly0011s0077 Marchantia polymorpha HOM05D006274 ORTHO05D007782 1.1e-32 144.1 129 55.8
Psat5g045880 Pisum sativum HOM05D006274 ORTHO05D007782 3.3e-29 132.5 134 57.5
SEGI_16140 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 4.8e-28 128.6 90 67.8
Rhsim07G0210300 Rhododendron simsii HOM05D006274 ORTHO05D007782 1.8e-27 126.7 70 84.3
SEGI_33866 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 2.4e-27 126.3 100 58.0
CBR_g39263 Chara braunii HOM05D002374 ORTHO05D003594 1.6e-26 123.6 101 57.4
EL10Ac9g22466 Beta vulgaris HOM05D006274 ORTHO05D007782 4.5e-26 122.1 70 82.9
Cre02.g082350 Chlamydomonas reinhardtii HOM05D006274 ORTHO05D007782 2.9e-25 119.4 97 58.8
PRCOL_00002052 Prasinoderma coloniale HOM05D006274 ORTHO05D007782 1.2e-23 114.0 94 56.4
AagrBONN_evm.TU.Sc2ySwM_228.3755 Anthoceros agrestis HOM05D006274 ORTHO05D007782 6.7e-22 108.2 109 52.3
Pp3c21_2600 Physcomitrium patens HOM05D006274 ORTHO05D007782 8.8e-22 107.8 103 53.4
CBR_g7959 Chara braunii HOM05D006274 ORTHO05D007782 1.0e-17 94.4 92 53.3
Ca_28793_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 4.7e-07 58.9 85 34.1


User provided reference genes

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