Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 7.1e-185 650.6 362 100.0
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 6.8e-103 378.3 364 57.4
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 2.9e-101 372.9 364 60.4
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 8.4e-101 371.3 358 59.5
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 2.5e-97 359.8 358 58.9
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 6.2e-96 355.1 356 56.5
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 4.9e-93 345.5 351 57.3
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 4.2e-92 342.4 367 61.0
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 5.4e-92 342.0 356 57.6
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 9.3e-92 341.3 356 55.9
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 3.5e-91 339.3 360 57.8
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 1.3e-90 337.4 359 53.2
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 1.3e-90 337.4 349 57.6
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 3.0e-90 336.3 359 60.2
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 5.1e-90 335.5 354 52.8
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 5.1e-90 335.5 364 53.0
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 6.6e-90 335.1 355 53.8
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 6.6e-90 335.1 357 57.1
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 8.7e-90 334.7 358 58.7
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 1.5e-89 334.0 355 53.5
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 1.5e-89 334.0 355 52.4
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 9.6e-89 331.3 357 53.8
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 2.1e-88 330.1 357 59.1
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 3.6e-88 329.3 356 55.1
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 6.2e-88 328.6 363 52.6
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 8.1e-88 328.2 355 56.9
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 1.1e-87 327.8 353 57.8
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.1e-87 327.8 355 56.6
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.1e-87 327.8 355 56.6
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 1.1e-87 327.8 350 57.4
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 2.4e-87 326.6 362 52.2
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 2.4e-87 326.6 362 52.2
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 2.4e-87 326.6 356 53.1
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 3.1e-87 326.2 356 54.8
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 5.3e-87 325.5 349 56.7
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 1.5e-86 323.9 358 52.2
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 2.6e-86 323.2 352 55.1
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 3.4e-86 322.8 356 53.7
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 5.8e-86 322.0 364 52.2
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 7.6e-86 321.6 351 53.3
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.3e-85 320.9 357 53.2
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.3e-85 320.9 357 53.2
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 1.7e-85 320.5 353 55.8
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 2.9e-85 319.7 360 56.1
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.9e-85 319.7 357 52.9
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 3.8e-85 319.3 358 53.1
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 3.8e-85 319.3 357 51.3
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 4.9e-85 318.9 354 50.3
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 8.4e-85 318.2 357 52.7
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 8.4e-85 318.2 357 52.7
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 1.1e-84 317.8 358 53.9
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 2.4e-84 316.6 353 55.5
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 1.2e-83 314.3 356 51.7
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 1.2e-83 314.3 351 55.0
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 3.5e-83 312.8 361 49.6
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 1.8e-82 310.5 352 51.7
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 3.0e-82 309.7 354 52.0
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 3.9e-82 309.3 364 56.9
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 8.7e-82 308.1 359 50.1
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 8.7e-82 308.1 353 51.6
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 1.5e-81 307.4 350 56.3
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 2.1e-80 303.5 361 56.0
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 3.7e-80 302.8 354 50.0
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 6.2e-80 302.0 354 50.3
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 8.1e-80 301.6 355 49.0
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 8.1e-80 301.6 352 54.5
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 1.8e-79 300.4 352 49.7
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 2.4e-79 300.1 364 47.8
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 6.9e-79 298.5 365 50.1
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 9.0e-79 298.1 357 51.8
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 3.4e-78 296.2 365 50.1
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 3.4e-78 296.2 365 49.9
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 5.8e-78 295.4 353 53.0
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 5.8e-78 295.4 355 54.1
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 9.9e-78 294.7 367 49.9
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 1.7e-77 293.9 365 49.9
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 1.7e-77 293.9 360 50.3
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 3.8e-77 292.7 363 49.0
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 4.9e-77 292.4 372 46.5
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 8.4e-77 291.6 363 49.6
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 2.4e-76 290.0 368 50.5
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 5.5e-76 288.9 355 48.2
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 7.1e-76 288.5 365 46.3
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 9.3e-76 288.1 354 48.0
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 1.2e-75 287.7 341 45.7
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 1.2e-75 287.7 310 56.8
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 1.6e-75 287.3 362 48.3
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 2.1e-75 287.0 359 51.0
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 2.7e-75 286.6 366 49.2
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 4.6e-75 285.8 366 48.6
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 4.6e-75 285.8 371 47.7
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 4.6e-75 285.8 371 47.7
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 7.9e-75 285.0 356 49.4
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 1.0e-74 284.6 355 49.3
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 1.8e-74 283.9 353 48.7
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 5.1e-74 282.3 355 50.7
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 6.7e-74 282.0 319 50.2
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 1.5e-73 280.8 354 54.5
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 1.5e-73 280.8 360 49.4
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 1.9e-73 280.4 312 52.2
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 2.5e-73 280.0 326 54.9
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 4.3e-73 279.3 339 44.0
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 7.4e-73 278.5 358 51.7
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 9.6e-73 278.1 366 48.9
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 9.6e-73 278.1 337 49.0
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 1.6e-72 277.3 364 45.1
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 1.7e-69 267.3 367 49.9
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 4.9e-69 265.8 351 44.2
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 8.4e-69 265.0 350 44.0
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 2.5e-68 263.5 355 43.4
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 2.1e-67 260.4 277 53.4
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 6.0e-67 258.8 356 45.5
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 4.1e-63 246.1 335 44.8
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 3.4e-62 243.0 294 49.3
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 1.0e-61 241.5 374 43.9
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 1.3e-61 241.1 380 39.2
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 3.8e-61 239.6 309 46.6
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 8.5e-61 238.4 339 44.2
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 3.2e-60 236.5 287 54.0
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 3.2e-52 209.9 368 42.4
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 4.8e-48 196.1 272 44.1
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 1.8e-47 194.1 236 48.3
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 7.7e-46 188.7 372 36.3
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 7.7e-46 188.7 270 41.5
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 1.1e-39 168.3 248 40.3
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 1.4e-34 151.4 97 76.3
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 1.5e-33 147.9 359 31.2
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 2.2e-32 144.1 306 33.0
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 7.7e-30 135.6 111 64.0
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 3.8e-29 133.3 346 35.5
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 3.0e-26 123.6 146 45.9
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.6e-25 120.6 131 57.3
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.6e-25 120.6 131 57.3
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 1.2e-17 95.1 64 71.9
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 5.7e-17 92.8 62 72.6
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 9.8e-17 92.0 52 80.8
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 4.9e-16 89.7 125 40.0
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 4.9e-16 89.7 78 71.8
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 2.4e-15 87.4 252 27.0
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 1.2e-14 85.1 127 38.6
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 1.2e-14 85.1 284 26.4
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 2.9e-13 80.5 126 38.1
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 2.5e-12 77.4 76 50.0
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 3.3e-12 77.0 76 48.7
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 1.2e-11 75.1 50 72.0
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 6.1e-11 72.8 49 75.5
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 3.0e-10 70.5 58 56.9
unitig_26.g9167 Utricularia gibba HOM05D004932 ORTHO05D005622 8.9e-10 68.9 98 50.0
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 1.2e-06 58.5 129 35.7
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 4.6e-06 56.6 38 76.3


User provided reference genes

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