Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 2.0e-261 905.2 449 100.0
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 4.1e-113 412.5 523 48.4
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 5.7e-107 392.1 453 51.9
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 5.3e-105 385.6 529 43.3
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 6.5e-103 378.6 530 43.0
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 5.5e-102 375.6 530 42.5
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 2.7e-101 373.2 530 42.3
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 2.7e-101 373.2 532 42.7
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.0e-100 371.3 525 42.7
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 8.8e-100 368.2 526 42.4
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 5.7e-99 365.5 530 41.5
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 9.1e-97 358.2 527 41.4
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 1.9e-94 350.5 525 41.0
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 1.9e-94 350.5 519 41.0
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 1.9e-94 350.5 507 44.0
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 3.2e-94 349.7 526 40.1
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 3.6e-93 346.3 525 40.4
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 6.1e-93 345.5 424 46.5
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 1.8e-92 344.0 513 40.9
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 1.5e-91 340.9 420 46.7
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 2.0e-91 340.5 530 38.3
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 5.7e-91 339.0 526 40.1
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 5.7e-91 339.0 535 39.3
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 5.7e-91 339.0 525 39.4
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 1.1e-89 334.7 521 38.6
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 1.4e-89 334.3 526 39.2
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 2.4e-89 333.6 527 38.0
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 3.1e-89 333.2 527 38.3
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 9.1e-89 331.6 528 38.6
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 2.6e-88 330.1 527 38.9
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 7.7e-88 328.6 529 37.8
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 6.5e-87 325.5 530 37.5
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 1.2e-85 321.2 527 38.5
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 4.7e-85 319.3 525 37.7
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 1.4e-84 317.8 530 37.5
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 1.4e-84 317.8 530 36.6
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 2.3e-84 317.0 522 37.4
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 2.3e-84 317.0 515 37.3
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 3.0e-84 316.6 528 38.1
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 8.8e-84 315.1 528 36.6
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 2.6e-83 313.5 581 35.3
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 2.2e-82 310.5 527 36.6
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 2.8e-82 310.1 529 37.2
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 2.8e-82 310.1 516 37.4
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 4.8e-82 309.3 527 36.4
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.4e-81 307.8 508 38.0
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 2.4e-81 307.0 529 36.9
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 2.4e-81 307.0 530 37.2
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.1e-81 306.6 516 37.6
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 2.0e-80 303.9 529 36.3
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 2.0e-80 303.9 529 36.3
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 2.7e-80 303.5 521 37.4
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 3.5e-80 303.1 527 35.3
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 4.5e-80 302.8 412 42.7
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 1.0e-79 301.6 527 35.1
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 2.2e-79 300.4 412 42.5
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 2.9e-79 300.1 526 36.9
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 8.5e-79 298.5 529 35.9
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 1.1e-78 298.1 527 35.3
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 2.5e-78 297.0 526 35.9
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 4.2e-78 296.2 526 36.9
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 5.5e-78 295.8 530 34.0
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 9.4e-78 295.0 526 35.7
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 9.4e-78 295.0 527 35.3
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 1.2e-77 294.7 525 36.2
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 1.2e-77 294.7 424 40.6
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 2.7e-77 293.5 526 35.6
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 4.7e-77 292.7 526 35.6
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 1.0e-76 291.6 521 36.7
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 4.0e-76 289.7 532 35.0
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 5.2e-76 289.3 521 34.5
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 5.2e-76 289.3 532 35.5
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 6.8e-76 288.9 528 35.0
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 1.2e-75 288.1 533 36.6
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 1.2e-75 288.1 524 37.2
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 2.0e-75 287.3 525 35.2
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 5.7e-75 285.8 528 35.4
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 7.5e-75 285.4 530 34.9
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 7.5e-75 285.4 511 35.4
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 2.8e-74 283.5 527 35.1
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 4.8e-74 282.7 421 40.1
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 8.3e-74 282.0 524 34.9
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 1.1e-73 281.6 533 35.6
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 3.1e-73 280.0 420 39.3
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 3.1e-73 280.0 511 34.4
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 3.1e-73 280.0 428 40.0
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 5.4e-73 279.3 522 35.2
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 1.2e-72 278.1 526 35.0
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 2.7e-72 276.9 524 34.2
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 5.9e-72 275.8 525 34.3
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 5.9e-72 275.8 522 35.1
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 5.9e-72 275.8 524 34.5
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 2.9e-71 273.5 421 38.2
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 8.6e-71 271.9 522 34.1
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 2.5e-70 270.4 520 33.1
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 2.5e-70 270.4 509 36.0
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 2.1e-69 267.3 421 38.0
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 1.8e-68 264.2 517 34.6
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 7.5e-67 258.8 416 36.8
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 9.2e-65 251.9 390 39.2
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.1e-62 245.0 406 37.2
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.1e-62 245.0 424 35.4
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 2.5e-62 243.8 408 38.0
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 4.7e-61 239.6 358 39.1
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 5.2e-60 236.1 280 50.0
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 9.8e-59 231.9 439 35.5
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 2.7e-56 223.8 244 52.5
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 6.0e-48 196.1 333 36.9
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 6.0e-48 196.1 333 36.9
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 3.9e-47 193.4 428 32.2
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 4.0e-44 183.3 206 48.5
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 4.6e-40 169.9 188 50.5
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 6.0e-40 169.5 453 28.3
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 3.9e-39 166.8 410 28.8
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 1.1e-36 158.7 203 42.9
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 3.4e-35 153.7 208 40.4
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 1.6e-29 134.8 94 63.8
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 4.8e-29 133.3 124 51.6
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 6.2e-29 132.9 127 51.2
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 6.2e-29 132.9 127 51.2
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 6.9e-28 129.4 124 51.6
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 1.2e-24 118.6 455 23.1
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 8.7e-23 112.5 75 76.0
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 3.4e-19 100.5 470 21.9
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 6.2e-13 79.7 166 27.7
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 1.1e-12 79.0 88 47.7
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.8e-12 78.2 171 33.3
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 5.3e-12 76.6 88 45.5
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.3e-10 72.0 71 52.1
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 3.2e-09 67.4 46 63.0
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 9.3e-09 65.9 346 20.5
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 3.5e-08 63.9 40 67.5
Cc06_g10970 Coffea canephora HOM05D005294 ORTHO05D038989 7.9e-08 62.8 48 62.5
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 7.9e-08 62.8 56 53.6


User provided reference genes

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