Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold10G05185 Striga asiatica HOM05D000001 ORTHO05D022897 8.4e-82 307.0 158 100.0
SGA_v2.0_scaffold10G05189 Striga asiatica HOM05D000001 ORTHO05D022897 3.3e-78 295.0 155 97.4
SGA_v2.0_scaffold10G05186 Striga asiatica HOM05D000001 ORTHO05D022897 1.3e-74 283.1 157 93.6
SGA_v2.0_scaffold12G06307 Striga asiatica HOM05D000001 ORTHO05D000003 2.3e-55 219.2 150 79.3
SGA_v2.0_scaffold10G05181 Striga asiatica HOM05D000001 ORTHO05D022897 2.1e-48 196.1 115 89.6
Migut.H02526 Erythranthe guttata HOM05D000001 ORTHO05D000003 1.3e-26 123.6 104 61.5
CSS0009634 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 1.7e-18 96.7 104 50.0
Haze_15061 Corylus avellana HOM05D000001 ORTHO05D000003 6.6e-18 94.7 104 49.0
FvH4_1g12800 Fragaria vesca HOM05D000001 ORTHO05D000003 4.3e-17 92.0 94 45.7
Dinv39141 Davidia involucrata HOM05D000001 ORTHO05D000003 7.3e-17 91.3 104 49.0
QL06p047118 Quercus lobata HOM05D000001 ORTHO05D000003 9.5e-17 90.9 105 46.7
FAN19G2060 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.2e-16 90.5 94 44.7
Cc07_g09860 Coffea canephora HOM05D000001 ORTHO05D000003 2.8e-16 89.4 104 48.1
Dinv13497 Davidia involucrata HOM05D000001 ORTHO05D000003 1.1e-15 87.4 94 50.0
HanXRQChr07g0191641 Helianthus annuus HOM05D000001 ORTHO05D000003 4.0e-15 85.5 104 46.2
CiPaw.01G044600 Carya illinoinensis HOM05D000001 ORTHO05D000003 5.2e-15 85.1 106 44.3
RcHm_v2.0_Chr2g0100941 Rosa chinensis HOM05D000001 ORTHO05D000003 5.2e-15 85.1 104 44.2
Cfa004340 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.2e-14 84.0 104 47.1
ClCG07G001640 Citrullus lanatus HOM05D000001 ORTHO05D000003 1.2e-14 84.0 104 42.3
Lsat_1_v5_gn_2_79280 Lactuca sativa HOM05D000001 ORTHO05D000003 1.2e-14 84.0 104 48.1
SalBow1G0226 Salvia bowleyana HOM05D000001 ORTHO05D000003 1.2e-14 84.0 55 67.3
FvH4_1g12840 Fragaria vesca HOM05D000001 ORTHO05D012013 1.5e-14 83.6 105 41.9
MD02G1143600 Malus domestica HOM05D000001 ORTHO05D000003 2.6e-14 82.8 104 43.3
MELO3C030763.2 Cucumis melo HOM05D000001 ORTHO05D000003 4.4e-14 82.0 104 42.3
PGSC0003DMG400010442 Solanum tuberosum HOM05D000001 ORTHO05D000003 5.8e-14 81.6 94 44.7
Atru.BG.113.p Acer truncatum HOM05D000001 ORTHO05D000003 1.3e-13 80.5 68 55.9
Manes.01G138200 Manihot esculenta HOM05D000001 ORTHO05D000003 1.3e-13 80.5 104 46.2
Gohir.A11G182750 Gossypium hirsutum HOM05D000001 ORTHO05D000003 2.2e-13 79.7 62 59.7
Nitab4.5_0006282g0010 Nicotiana tabacum HOM05D000001 ORTHO05D000003 6.4e-13 78.2 94 43.6
CsaV3_4G027330 Cucumis sativus L. HOM05D000001 ORTHO05D000003 8.3e-13 77.8 110 41.8
Lalb_Chr07g0195431 Lupinus albus HOM05D000001 ORTHO05D000003 8.3e-13 77.8 79 49.4
Sabra07G0018800 Salix brachista HOM05D000001 ORTHO05D000003 8.3e-13 77.8 103 44.7
Sopen02g017800 Solanum pennellii HOM05D000001 ORTHO05D000003 8.3e-13 77.8 102 43.1
Eucgr.I02411 Eucalyptus grandis HOM05D000001 ORTHO05D000003 1.1e-12 77.4 98 44.9
Prupe.7G158100 Prunus persica HOM05D000001 ORTHO05D000003 1.4e-12 77.0 55 61.8
Thecc.01G031400 Theobroma cacao HOM05D000001 ORTHO05D000003 1.4e-12 77.0 104 42.3
Duzib187G1962 Durio zibethinus HOM05D000001 ORTHO05D000003 3.2e-12 75.9 105 40.0
Glyma.18G151600 Glycine max HOM05D000001 ORTHO05D000003 3.2e-12 75.9 70 55.7
GSVIVG01018922001 Vitis vinifera HOM05D000001 ORTHO05D000003 3.2e-12 75.9 97 42.3
Lsat_1_v5_gn_2_77520 Lactuca sativa HOM05D000001 ORTHO05D000003 4.1e-12 75.5 55 61.8
Cpa.g.sc6.154 Carica papaya HOM05D000001 ORTHO05D000003 5.4e-12 75.1 67 46.3
arahy.Tifrunner.gnm1.ann1.7QDM7Z Arachis hypogaea HOM05D000001 ORTHO05D000003 7.1e-12 74.7 56 60.7
Gohir.D11G189350 Gossypium hirsutum HOM05D000001 ORTHO05D000003 7.1e-12 74.7 117 41.0
Gorai.007G201600 Gossypium raimondii HOM05D000001 ORTHO05D000003 7.1e-12 74.7 117 41.0
SHI08638 Sapria himalayana HOM05D000001 ORTHO05D000003 7.1e-12 74.7 57 57.9
Actinidia19198 Actinidia chinensis HOM05D000001 ORTHO05D000003 9.2e-12 74.3 108 43.5
Ciclev10025033m.g Citrus clementina HOM05D000001 ORTHO05D000003 9.2e-12 74.3 53 64.2
Glyma.03G081800 Glycine max HOM05D000001 ORTHO05D000003 9.2e-12 74.3 59 61.0
Solyc02g068630.1 Solanum lycopersicum HOM05D000001 ORTHO05D000003 9.2e-12 74.3 94 42.6
HPP92_006257 Vanilla planifolia HOM05D000001 ORTHO05D000003 9.2e-12 74.3 53 62.3
Oeu023338.1 Olea europaea HOM05D000001 ORTHO05D000003 1.2e-11 73.9 55 56.4
Sed0004420 Sechium edule HOM05D000001 ORTHO05D000003 1.2e-11 73.9 109 42.2
Lj4g0019707 Lotus japonicus HOM05D000001 ORTHO05D000003 1.6e-11 73.6 55 58.2
Nitab4.5_0003379g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.6e-11 73.6 58 55.2
Rhsim08G0074500 Rhododendron simsii HOM05D000001 ORTHO05D000003 1.6e-11 73.6 96 41.7
Sc16g0002580 Simmondsia chinensis HOM05D000001 ORTHO05D000003 1.6e-11 73.6 55 58.2
arahy.Tifrunner.gnm1.ann1.57MQ1T Arachis hypogaea HOM05D000001 ORTHO05D000003 2.1e-11 73.2 56 60.7
HPP92_006194 Vanilla planifolia HOM05D000001 ORTHO05D000003 2.1e-11 73.2 53 62.3
VMungo0331G1884 Vigna mungo HOM05D000001 ORTHO05D000003 3.5e-11 72.4 59 55.9
Potri.007G021700 Populus trichocarpa HOM05D000001 ORTHO05D000003 4.6e-11 72.0 104 40.4
EL10Ac9g21485 Beta vulgaris HOM05D000001 ORTHO05D000003 7.8e-11 71.2 56 53.6
PSO063G6068 Papaver somniferum HOM05D000001 ORTHO05D000003 7.8e-11 71.2 72 48.6
Psat7g252960 Pisum sativum HOM05D000001 ORTHO05D000003 7.8e-11 71.2 56 60.7
Ca_20397_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 1.3e-10 70.5 56 60.7
arahy.Tifrunner.gnm1.ann1.ZJ2Y1P Arachis hypogaea HOM05D000001 ORTHO05D000003 1.7e-10 70.1 56 57.1
CAN.G149.21 Capsicum annuum HOM05D000001 ORTHO05D000003 1.7e-10 70.1 65 47.7
PGR119G0230 Punica granatum HOM05D000001 ORTHO05D000003 1.7e-10 70.1 105 41.0
Aqoxy6G01162 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 2.3e-10 69.7 55 54.5
Eucgr.A02405 Eucalyptus grandis HOM05D000001 ORTHO05D000003 2.3e-10 69.7 60 50.0
Nn7g38027 Nelumbo nucifera HOM05D000001 ORTHO05D000003 3.0e-10 69.3 104 41.3
Phvul.006G162500 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 3.0e-10 69.3 56 55.4
RcHm_v2.0_Chr3g0479601 Rosa chinensis HOM05D011771 ORTHO05D012013 3.0e-10 69.3 77 46.8
PSO832G1561 Papaver somniferum HOM05D000001 ORTHO05D000003 3.9e-10 68.9 57 49.1
Psat7g031160 Pisum sativum HOM05D000001 ORTHO05D023426 3.9e-10 68.9 56 57.1
DCAR_019056 Daucus carota HOM05D000001 ORTHO05D000003 5.1e-10 68.6 55 56.4
Psat7g031200 Pisum sativum HOM05D000001 ORTHO05D023426 6.6e-10 68.2 56 55.4
TAR381G0071 Trochodendron aralioides HOM05D000001 ORTHO05D000003 6.6e-10 68.2 73 41.1
TPR.G24194 Trifolium pratense HOM05D000001 ORTHO05D022897 8.6e-10 67.8 56 57.1
TPR.G29127 Trifolium pratense HOM05D000001 ORTHO05D000003 8.6e-10 67.8 56 57.1
BcaB02g10028 Brassica carinata HOM05D000001 ORTHO05D000003 3.3e-09 65.9 68 45.6
COL.COLO4_22037 Corchorus olitorius HOM05D000001 ORTHO05D000003 3.3e-09 65.9 55 52.7
Medtr4g014050 Medicago truncatula HOM05D000001 ORTHO05D000003 3.3e-09 65.9 56 55.4
FAN15G1754 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.3e-09 65.5 53 54.7
ClCG01G019740 Citrullus lanatus HOM05D000001 ORTHO05D000003 1.6e-08 63.5 64 39.1
Ah.01g009720 Amaranthus hybridus HOM05D000001 ORTHO05D000003 2.1e-08 63.2 96 32.3
CANSAT01G0165 Cannabis sativa HOM05D000001 ORTHO05D000003 2.8e-08 62.8 68 44.1
Peaxi162Scf00149g00011 Petunia axillaris HOM05D000001 ORTHO05D000003 2.8e-08 62.8 55 50.9
A09p09980 Brassica napus HOM05D000001 ORTHO05D000003 3.6e-08 62.4 73 38.4
CARHR156560 Cardamine hirsuta HOM05D000001 ORTHO05D000003 4.7e-08 62.0 68 38.2
THA.LOC104819201 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 8.1e-08 61.2 80 33.8
BraA09t36644Z Brassica rapa HOM05D000001 ORTHO05D000424 1.1e-07 60.8 73 37.0
AUR62013136 Chenopodium quinoa HOM05D000001 ORTHO05D000003 1.1e-07 60.8 63 38.1
Aa31LG1G14980 Aethionema arabicum HOM05D000001 ORTHO05D000003 1.4e-07 60.5 73 37.0
MBI17_g12505_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 1.4e-07 60.5 53 50.9
A07p17500 Brassica napus HOM05D000001 ORTHO05D000003 3.1e-07 59.3 53 50.9
RcHm_v2.0_Chr7g0193871 Rosa chinensis HOM05D000001 ORTHO05D023426 3.1e-07 59.3 55 52.7
ATR0824G028 Amborella trichopoda HOM05D000001 ORTHO05D000003 5.2e-07 58.5 59 44.1
C07p25430 Brassica napus HOM05D000001 ORTHO05D000424 5.2e-07 58.5 53 50.9
BolC7t43066H Brassica oleracea HOM05D000001 ORTHO05D000003 5.2e-07 58.5 53 50.9
TPR.G22350 Trifolium pratense HOM05D000001 ORTHO05D009862 5.2e-07 58.5 65 40.0
Carub.0005s1398 Capsella rubella HOM05D000001 ORTHO05D000003 8.9e-07 57.8 60 38.3
Psat1g155120 Pisum sativum HOM05D000001 ORTHO05D009862 1.2e-06 57.4 60 40.0
C09p11840 Brassica napus HOM05D000001 ORTHO05D000424 2.0e-06 56.6 73 37.0
Sc07g0001490 Simmondsia chinensis HOM05D000001 ORTHO05D009295 2.6e-06 56.2 59 44.1
BcaC04g23128 Brassica carinata HOM05D000001 ORTHO05D000003 3.4e-06 55.8 73 35.6
BolC9t54074H Brassica oleracea HOM05D000001 ORTHO05D000424 3.4e-06 55.8 73 35.6
AL5G27160 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 4.4e-06 55.5 53 41.5
BcaNung05719 Brassica carinata HOM05D000001 ORTHO05D000003 4.4e-06 55.5 73 35.6
Sp2g30270 Schrenkiella parvula HOM05D000001 ORTHO05D000003 5.8e-06 55.1 60 40.0
Sed0002783 Sechium edule HOM05D000001 ORTHO05D000003 5.8e-06 55.1 65 44.6
MELO3C020045.2 Cucumis melo HOM05D000001 ORTHO05D000003 7.6e-06 54.7 65 38.5
Lj6g0009472 Lotus japonicus HOM05D000001 ORTHO05D000003 7.6e-06 54.7 51 49.0
Ciclev10005013m.g Citrus clementina HOM05D000001 ORTHO05D009340 9.9e-06 54.3 43 53.5
Manes.12G142900 Manihot esculenta HOM05D000001 ORTHO05D000003 9.9e-06 54.3 61 44.3
PGR142G3401 Punica granatum HOM05D000001 ORTHO05D009834 9.9e-06 54.3 56 42.9


User provided reference genes

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