Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 7.5e-183 644.0 409 100.0
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 1.2e-98 364.4 332 78.0
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 3.5e-95 352.8 331 81.3
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 4.7e-92 342.4 340 77.9
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 6.1e-92 342.0 331 79.2
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 5.2e-91 339.0 334 76.3
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 3.7e-89 332.8 331 74.3
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 4.9e-89 332.4 312 77.2
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 1.1e-88 331.3 331 66.2
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 7.0e-88 328.6 310 75.8
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 2.0e-87 327.0 312 72.8
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 5.9e-87 325.5 321 72.6
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 1.0e-86 324.7 327 75.5
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 2.9e-86 323.2 331 64.4
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 1.5e-85 320.9 321 73.2
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 1.5e-85 320.9 320 72.8
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 4.3e-85 319.3 325 75.4
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 1.2e-84 317.8 320 73.8
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 2.8e-84 316.6 320 73.8
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 8.0e-84 315.1 320 73.1
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 8.0e-84 315.1 354 60.7
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 1.4e-83 314.3 329 74.8
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 2.3e-83 313.5 321 72.3
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 2.3e-83 313.5 317 72.9
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 5.2e-83 312.4 340 75.0
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 1.2e-82 311.2 302 77.2
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 2.6e-82 310.1 317 71.0
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 2.6e-82 310.1 327 66.7
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 7.5e-82 308.5 320 72.5
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 7.5e-82 308.5 320 72.5
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 1.7e-81 307.4 321 71.3
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 1.7e-81 307.4 323 71.8
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 2.2e-81 307.0 391 65.0
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 2.9e-81 306.6 332 66.3
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 6.4e-81 305.4 321 70.1
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 3.2e-80 303.1 332 66.0
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 3.2e-80 303.1 309 78.3
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 4.1e-80 302.8 324 65.4
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 7.0e-80 302.0 317 67.2
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 1.2e-79 301.2 313 70.6
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 2.7e-79 300.1 326 66.9
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 3.5e-79 299.7 315 66.3
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 1.3e-78 297.7 326 68.1
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 1.7e-78 297.4 326 69.3
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 3.0e-78 296.6 329 74.2
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 3.0e-78 296.6 321 70.1
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 5.0e-78 295.8 330 70.6
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 6.6e-78 295.4 315 74.3
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 8.6e-78 295.0 321 65.4
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 8.6e-78 295.0 329 71.1
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 8.6e-78 295.0 320 72.8
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 1.1e-77 294.7 333 67.0
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.1e-77 294.7 328 71.0
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 1.5e-77 294.3 330 70.6
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 1.9e-77 293.9 323 65.0
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 5.6e-77 292.4 326 69.6
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 7.3e-77 292.0 320 73.4
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 7.3e-77 292.0 322 72.7
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 9.5e-77 291.6 315 73.0
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 9.5e-77 291.6 315 73.0
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 9.5e-77 291.6 325 72.0
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.2e-76 291.2 315 73.0
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 2.1e-76 290.4 293 78.5
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.1e-76 290.4 322 71.1
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 2.8e-76 290.0 314 65.3
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 2.8e-76 290.0 314 65.3
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 2.8e-76 290.0 321 71.0
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 4.7e-76 289.3 330 63.9
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 8.0e-76 288.5 317 73.2
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 8.0e-76 288.5 332 64.5
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 8.0e-76 288.5 332 64.5
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 8.0e-76 288.5 333 64.0
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.4e-75 287.7 334 70.4
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 1.8e-75 287.3 323 61.3
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 4.0e-75 286.2 326 70.6
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 4.0e-75 286.2 321 72.3
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 5.2e-75 285.8 358 54.2
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 6.8e-75 285.4 317 72.2
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 6.8e-75 285.4 322 70.5
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 8.9e-75 285.0 317 72.6
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 7.5e-74 282.0 326 66.0
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 1.3e-73 281.2 334 71.3
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.3e-73 281.2 326 67.5
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 2.9e-73 280.0 326 62.9
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 8.3e-73 278.5 324 63.0
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 2.7e-71 273.5 319 69.0
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 4.6e-71 272.7 317 64.7
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 7.8e-71 271.9 295 71.9
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 7.8e-71 271.9 316 69.3
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 1.0e-70 271.6 326 65.0
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 2.3e-70 270.4 327 67.9
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 3.9e-70 269.6 309 70.2
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 8.6e-70 268.5 311 69.8
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 1.1e-69 268.1 309 70.6
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 1.5e-69 267.7 327 63.0
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.6e-68 264.2 307 72.0
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 3.6e-68 263.1 234 71.4
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 6.2e-68 262.3 326 63.2
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 1.1e-67 261.5 311 60.1
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 1.8e-67 260.8 330 67.9
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 2.3e-67 260.4 303 73.3
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 5.2e-67 259.2 300 71.0
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 8.9e-67 258.5 312 71.5
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 4.4e-66 256.1 303 72.3
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 1.3e-65 254.6 312 62.2
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 8.3e-65 251.9 296 70.9
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 5.4e-64 249.2 314 65.6
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 1.6e-63 247.7 295 62.4
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 2.7e-63 246.9 343 53.4
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.3e-62 244.6 322 59.0
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 5.1e-62 242.7 331 58.0
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 1.2e-60 238.0 216 63.9
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 1.2e-60 238.0 243 62.1
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 3.6e-60 236.5 291 70.4
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 1.4e-56 224.6 291 61.5
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 2.1e-55 220.7 174 64.4
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 2.7e-55 220.3 174 64.4
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 4.6e-55 219.5 216 61.6
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 1.3e-54 218.0 312 61.2
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 3.9e-54 216.5 166 68.7
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 7.3e-53 212.2 302 64.6
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 1.3e-52 211.5 216 69.4
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.8e-51 207.6 309 53.1
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 3.1e-51 206.8 175 67.4
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 7.6e-50 202.2 313 58.5
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 1.3e-49 201.4 175 64.6
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 6.4e-49 199.1 309 61.2
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 1.0e-46 191.8 174 62.1
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 1.7e-46 191.0 229 72.1
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 2.5e-45 187.2 184 62.5
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 5.6e-45 186.0 170 61.8
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 7.3e-45 185.7 310 56.1
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 2.1e-44 184.1 327 49.2
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 8.1e-44 182.2 153 63.4
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 1.4e-43 181.4 149 63.8
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 1.8e-43 181.0 218 55.0
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 5.3e-43 179.5 183 71.0
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 6.9e-43 179.1 333 44.7
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 7.1e-40 169.1 159 60.4
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 2.1e-39 167.5 212 78.8
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 1.0e-38 165.2 151 66.2
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 8.7e-38 162.2 122 70.5
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 9.0e-35 152.1 113 67.3
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 3.8e-33 146.7 152 57.9
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.5e-32 144.1 155 54.2
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 3.9e-30 136.7 167 53.9
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 4.3e-29 133.3 156 54.5
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.1e-27 128.6 207 66.2
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 6.5e-25 119.4 150 54.7
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 5.7e-21 106.3 182 65.4
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.2e-20 104.4 95 60.0
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.7e-20 103.6 95 60.0
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.7e-20 103.6 95 60.0
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 1.8e-19 101.3 147 41.5
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.8e-17 93.6 88 58.0
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.5e-16 90.9 94 54.3
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 6.1e-15 86.3 348 26.4
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 2.3e-14 84.3 95 49.5
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 3.3e-13 80.5 94 48.9
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 3.7e-12 77.0 94 47.9
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 5.3e-11 73.2 95 44.2
C03p68800 Brassica napus HOM05D004175 ORTHO05D004664 2.6e-10 70.9 55 61.8
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 3.8e-09 67.0 101 41.6
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 8.5e-09 65.9 61 54.1
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 1.2e-07 62.0 46 60.9
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.7e-07 60.8 62 53.2
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 4.7e-07 60.1 161 47.2
HPP92_002875 Vanilla planifolia HOM05D004175 ORTHO05D004664 1.0e-06 58.9 81 43.2


User provided reference genes

Program Settings