Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 0.0e+00 1314.7 717 100.0
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 9.2e-293 1010.0 691 82.8
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 3.1e-288 995.0 691 81.3
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 2.1e-281 972.2 689 78.5
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 1.8e-280 969.1 682 78.2
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.5e-279 966.1 689 78.2
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 1.5e-279 966.1 689 78.4
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 3.2e-277 958.4 652 81.4
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 3.3e-274 948.3 755 72.2
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 3.3e-274 948.3 755 72.2
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 7.3e-274 947.2 687 77.4
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 7.3e-274 947.2 690 76.2
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 3.6e-273 944.9 689 76.8
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 4.7e-273 944.5 688 76.5
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 4.4e-271 937.9 687 76.9
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 9.9e-271 936.8 689 75.6
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 6.4e-270 934.1 689 76.1
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 6.4e-270 934.1 687 76.6
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 1.9e-269 932.6 683 75.7
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 2.4e-269 932.2 687 76.3
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 2.4e-269 932.2 687 76.6
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 3.2e-269 931.8 655 78.8
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 7.1e-269 930.6 665 76.7
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 6.0e-268 927.5 690 75.7
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 1.7e-267 926.0 674 76.1
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 3.0e-267 925.2 689 75.2
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 3.9e-267 924.9 688 76.3
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 5.1e-267 924.5 689 76.3
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 1.1e-266 923.3 688 74.6
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 1.5e-266 922.9 689 74.3
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 1.9e-266 922.5 690 74.2
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 2.5e-266 922.2 687 75.5
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 7.3e-266 920.6 690 75.2
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 7.3e-266 920.6 687 74.1
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 9.6e-266 920.2 689 73.3
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 2.8e-265 918.7 689 75.0
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 1.4e-264 916.4 690 74.9
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 1.2e-263 913.3 691 74.0
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 2.6e-263 912.1 687 74.8
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 5.8e-263 911.0 694 74.4
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 1.7e-262 909.4 688 73.0
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 2.2e-262 909.1 689 73.0
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 2.2e-262 909.1 673 75.0
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 2.2e-262 909.1 689 74.0
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 3.8e-262 908.3 665 75.6
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 6.4e-262 907.5 681 76.1
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 6.4e-262 907.5 687 73.4
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 8.4e-262 907.1 689 73.0
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 1.9e-261 906.0 694 73.8
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 3.2e-261 905.2 689 74.0
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 4.2e-261 904.8 671 75.1
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 1.6e-260 902.9 692 73.6
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 6.0e-260 901.0 682 74.9
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 7.8e-260 900.6 671 74.4
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 2.3e-259 899.0 656 76.5
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 3.0e-259 898.7 690 74.2
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 3.0e-259 898.7 690 72.9
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 5.1e-259 897.9 691 72.6
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 3.3e-258 895.2 720 71.0
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 9.6e-258 893.6 692 73.6
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 1.6e-257 892.9 690 73.8
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 2.8e-257 892.1 691 72.6
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 3.6e-257 891.7 689 72.1
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 4.8e-257 891.3 720 70.7
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 1.8e-256 889.4 689 72.1
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 2.4e-256 889.0 689 72.1
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 1.2e-255 886.7 690 71.7
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.2e-255 886.7 682 74.0
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 7.6e-255 884.0 682 73.5
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.3e-254 883.2 682 73.5
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 2.9e-254 882.1 688 71.1
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 1.4e-253 879.8 685 71.7
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 9.3e-253 877.1 690 72.3
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 1.3e-251 873.2 689 73.6
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 3.9e-251 871.7 688 72.8
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 2.5e-250 869.0 688 70.8
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 7.4e-250 867.5 688 70.3
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 7.4e-250 867.5 688 70.3
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 7.4e-250 867.5 689 71.8
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 1.4e-248 863.2 651 74.5
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 3.1e-248 862.1 690 71.2
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 1.2e-247 860.1 663 71.9
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 5.8e-247 857.8 581 81.8
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.9e-246 855.5 682 71.8
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 1.9e-245 852.8 689 70.2
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 3.2e-245 852.0 663 71.3
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 3.2e-245 852.0 731 68.4
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 5.5e-245 851.3 689 70.4
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 5.5e-245 851.3 689 70.4
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 7.1e-245 850.9 736 68.1
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 3.5e-244 848.6 689 70.0
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 2.5e-242 842.4 667 70.8
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 3.7e-241 838.6 698 69.6
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 4.2e-237 825.1 690 69.9
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 3.5e-236 822.0 670 71.0
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 2.3e-235 819.3 676 69.4
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 3.0e-235 818.9 686 68.8
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 3.0e-235 818.9 643 72.6
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.5e-234 816.6 669 70.0
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.9e-234 816.2 711 66.9
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 2.5e-234 815.8 669 70.0
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 4.8e-233 811.6 667 69.6
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 1.2e-231 807.0 602 76.4
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 7.7e-231 804.3 688 67.0
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 4.2e-229 798.5 720 66.0
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 9.4e-229 797.3 1039 50.4
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.1e-224 783.9 732 64.1
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 1.4e-224 783.5 656 68.1
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 2.2e-222 776.2 691 65.3
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 5.0e-222 775.0 671 66.3
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 3.2e-221 772.3 691 65.0
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 3.3e-218 762.3 670 64.9
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 9.7e-210 734.2 690 63.8
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 4.7e-204 715.3 559 72.6
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 4.0e-203 712.2 672 61.8
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.4e-200 703.7 674 61.1
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 1.1e-197 694.1 673 59.6
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.7e-190 670.2 650 60.0
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 2.0e-162 577.0 430 77.2
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 3.2e-152 543.1 406 76.1
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 5.1e-150 535.8 699 48.6
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 3.0e-134 483.4 365 73.4
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 1.2e-130 471.5 622 48.7
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 8.7e-118 428.7 359 64.3
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 3.6e-103 380.2 420 57.1
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 2.1e-87 327.8 505 46.9
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 8.3e-84 315.8 516 45.9
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 1.1e-75 288.9 708 32.8
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 2.0e-74 284.6 281 61.2
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 3.5e-50 204.1 126 84.9
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 2.6e-45 188.0 281 46.6
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 3.2e-43 181.0 566 31.4
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 8.6e-41 172.9 157 63.7
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 1.2e-39 169.1 133 69.9
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 8.1e-39 166.4 94 89.4
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 4.6e-34 150.6 185 52.4
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 6.0e-26 123.6 93 74.2
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 6.6e-25 120.2 602 25.6
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 9.9e-21 106.3 703 22.2
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 7.1e-19 100.1 74 74.3
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 3.9e-17 94.4 666 25.4
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 5.8e-13 80.5 105 52.4
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 6.5e-12 77.0 78 62.8
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 6.0e-10 70.5 46 76.1
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 4.3e-08 64.3 78 57.7
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 5.7e-08 63.9 206 34.5
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 3.7e-07 61.2 55 60.0


User provided reference genes

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