Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 6.1e-116 421.0 241 100.0
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 3.4e-50 202.6 226 56.6
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 1.0e-49 201.1 244 56.6
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 3.8e-49 199.1 234 58.5
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 6.5e-49 198.4 229 57.6
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 1.4e-48 197.2 229 57.6
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 1.4e-48 197.2 231 63.6
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 5.5e-48 195.3 248 53.6
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 5.5e-48 195.3 248 53.6
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 9.3e-48 194.5 248 53.2
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 9.3e-48 194.5 246 54.5
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 1.2e-47 194.1 261 50.6
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 1.6e-47 193.7 250 54.4
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.6e-47 193.7 248 53.6
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 2.1e-47 193.4 258 50.8
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 2.7e-47 193.0 247 54.7
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 6.0e-47 191.8 252 54.8
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 7.9e-47 191.4 231 56.7
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 2.3e-46 189.9 246 55.7
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 2.3e-46 189.9 251 53.8
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 2.3e-46 189.9 259 57.1
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 3.9e-46 189.1 262 57.3
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 6.7e-46 188.3 245 50.6
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 1.1e-45 187.6 257 51.8
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 1.5e-45 187.2 246 59.8
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 2.5e-45 186.4 231 54.1
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 2.5e-45 186.4 246 54.9
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 3.3e-45 186.0 250 52.0
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 3.3e-45 186.0 234 52.6
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 3.3e-45 186.0 247 53.0
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 4.3e-45 185.7 243 54.7
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 4.3e-45 185.7 225 53.8
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 7.4e-45 184.9 234 57.3
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 1.3e-44 184.1 248 57.7
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 2.1e-44 183.3 225 55.1
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 2.8e-44 183.0 245 49.0
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 4.8e-44 182.2 228 55.7
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 4.8e-44 182.2 249 55.8
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 8.2e-44 181.4 257 56.0
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 8.2e-44 181.4 254 52.0
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 1.1e-43 181.0 236 50.0
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 1.8e-43 180.3 230 52.6
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 2.4e-43 179.9 242 52.1
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 3.1e-43 179.5 228 50.9
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 3.1e-43 179.5 232 50.4
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 4.1e-43 179.1 231 55.0
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 5.3e-43 178.7 230 54.3
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 5.3e-43 178.7 244 52.9
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 9.0e-43 177.9 248 56.0
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 1.2e-42 177.6 234 55.6
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.5e-42 177.2 234 55.6
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 1.5e-42 177.2 244 54.1
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 2.0e-42 176.8 232 54.7
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 2.6e-42 176.4 244 57.8
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 2.6e-42 176.4 225 56.0
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 7.6e-42 174.9 266 48.1
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 1.0e-41 174.5 227 55.1
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.3e-41 174.1 230 50.4
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 2.9e-41 172.9 246 47.6
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 2.9e-41 172.9 247 51.0
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 5.0e-41 172.2 242 53.7
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 6.5e-41 171.8 247 45.7
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.4e-40 170.6 232 50.9
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 1.9e-40 170.2 229 55.5
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 2.5e-40 169.9 235 58.3
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 2.5e-40 169.9 231 55.0
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 3.2e-40 169.5 247 50.6
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 5.5e-40 168.7 231 54.1
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 7.2e-40 168.3 235 57.9
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 7.2e-40 168.3 288 53.5
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 9.3e-40 167.9 231 54.1
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 1.2e-39 167.5 238 57.6
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 1.6e-39 167.2 249 48.6
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 2.1e-39 166.8 232 52.6
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 3.6e-39 166.0 244 55.7
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 1.0e-38 164.5 271 45.0
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 5.1e-38 162.2 240 51.7
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 6.7e-38 161.8 287 45.6
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 8.7e-38 161.4 246 45.5
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 2.5e-37 159.8 229 56.3
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 7.4e-37 158.3 163 62.6
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 4.8e-36 155.6 237 49.4
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 8.2e-36 154.8 243 46.9
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 1.4e-35 154.1 236 53.8
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.8e-35 153.7 245 51.8
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 6.9e-35 151.8 245 43.7
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 2.6e-34 149.8 146 56.8
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 4.5e-34 149.1 246 52.0
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 1.3e-33 147.5 220 46.8
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 2.9e-33 146.4 236 55.5
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 2.9e-33 146.4 225 53.3
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 2.9e-33 146.4 165 52.7
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 3.8e-33 146.0 224 50.4
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 3.8e-33 146.0 240 52.9
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 5.0e-33 145.6 248 48.8
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 5.0e-33 145.6 238 50.8
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 6.5e-33 145.2 220 54.5
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 8.5e-33 144.8 249 48.2
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 1.1e-32 144.4 226 53.1
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 7.2e-32 141.7 225 52.4
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 9.4e-32 141.4 238 48.7
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 1.2e-31 141.0 230 53.5
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 1.2e-31 141.0 230 53.5
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 2.1e-31 140.2 230 50.9
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 2.7e-31 139.8 224 44.6
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 7.9e-31 138.3 255 51.4
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 2.3e-30 136.7 248 47.2
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 3.0e-30 136.3 249 47.0
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 8.8e-30 134.8 240 50.8
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 1.1e-29 134.4 276 38.0
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 1.5e-29 134.0 240 50.8
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 4.4e-29 132.5 241 50.2
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 5.7e-29 132.1 233 47.6
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 5.7e-29 132.1 238 47.5
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 4.8e-28 129.0 234 47.4
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 6.3e-28 128.6 196 56.6
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 8.2e-28 128.3 236 47.0
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 1.8e-27 127.1 196 54.6
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 4.1e-27 125.9 244 49.6
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 4.1e-27 125.9 244 49.6
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 6.9e-27 125.2 164 53.0
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 2.0e-26 123.6 246 48.8
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 2.0e-26 123.6 246 48.8
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 7.7e-26 121.7 261 47.5
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 6.5e-25 118.6 251 45.4
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 6.5e-25 118.6 265 43.0
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 5.5e-24 115.5 244 37.7
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 2.3e-22 110.2 143 47.6
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 5.2e-22 109.0 245 35.9
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 1.1e-21 107.8 247 42.5
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 2.6e-21 106.7 156 46.8
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 5.7e-21 105.5 270 40.7
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 1.4e-19 100.9 158 43.7
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 1.8e-19 100.5 245 43.7
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 3.1e-19 99.8 238 45.4
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 7.7e-18 95.1 233 44.6
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 1.5e-16 90.9 225 36.4
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 4.4e-13 79.3 42 78.6
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 6.3e-12 75.5 153 37.9
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 3.8e-09 66.2 85 43.5
Nitab4.5_0000728g0040 Nicotiana tabacum HOM05D002458 ORTHO05D002603 8.0e-07 58.5 134 34.3
Potri.007G042600 Populus trichocarpa HOM05D002458 ORTHO05D002603 8.0e-07 58.5 131 36.6
MBI06_g24647_MAGBIO Magnolia biondii HOM05D002458 ORTHO05D002603 1.4e-06 57.8 134 35.8
CiPaw.01G019100 Carya illinoinensis HOM05D002458 ORTHO05D002603 1.8e-06 57.4 132 37.9
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 2.3e-06 57.0 135 36.3
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 2.3e-06 57.0 94 48.9
TAR628G0915 Trochodendron aralioides HOM05D002458 ORTHO05D002603 2.3e-06 57.0 134 35.8
CARHR045750 Cardamine hirsuta HOM05D003370 ORTHO05D003848 3.0e-06 56.6 128 35.9
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 3.0e-06 56.6 150 32.0
Gohir.D13G157800 Gossypium hirsutum HOM05D003370 ORTHO05D003848 4.0e-06 56.2 109 36.7
PSO675G2615 Papaver somniferum HOM05D002458 ORTHO05D002603 5.2e-06 55.8 136 38.2
Solyc02g065020.2 Solanum lycopersicum HOM05D002458 ORTHO05D002603 5.2e-06 55.8 132 37.1
ATR0626G396 Amborella trichopoda HOM05D005221 ORTHO05D006355 6.8e-06 55.5 158 32.3
AL1G64260 Arabidopsis lyrata HOM05D003370 ORTHO05D003848 6.8e-06 55.5 117 35.0
BcaB04g18740 Brassica carinata HOM05D003370 ORTHO05D003848 8.8e-06 55.1 133 34.6
BcaC08g43669 Brassica carinata HOM05D003370 ORTHO05D003848 8.8e-06 55.1 101 36.6
C06p10920 Brassica napus HOM05D003370 ORTHO05D003848 8.8e-06 55.1 101 36.6
BolC6t36173H Brassica oleracea HOM05D003370 ORTHO05D003848 8.8e-06 55.1 101 36.6
Gorai.013G178500 Gossypium raimondii HOM05D003370 ORTHO05D003848 8.8e-06 55.1 109 36.7


User provided reference genes

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