Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 2.4e-129 465.7 265 100.0
SGA_v2.0_scaffold96G28968 Striga asiatica HOM05D020555 ORTHO05D401972 2.3e-63 246.5 138 93.5
SGA_v2.0_scaffold89G27598 Striga asiatica HOM05D020555 ORTHO05D403968 5.1e-63 245.4 150 87.3
SGA_v2.0_scaffold15G07388 Striga asiatica HOM05D020555 ORTHO05D401249 4.2e-57 225.7 138 89.9
SGA_v2.0_scaffold69G23244 Striga asiatica HOM05D020555 ORTHO05D401052 4.3e-54 215.7 124 92.7
SGA_v2.0_scaffold232G43522 Striga asiatica HOM05D020555 ORTHO05D399585 1.0e-18 98.2 89 67.4
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 8.5e-18 95.1 70 77.1
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.9e-17 94.0 70 78.6
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 5.5e-17 92.4 70 77.1
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 5.5e-17 92.4 70 77.1
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 2.1e-16 90.5 70 75.7
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.7e-16 90.1 70 77.1
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.7e-16 90.1 70 77.1
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.6e-16 89.7 70 74.3
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 4.6e-16 89.4 70 74.3
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 4.6e-16 89.4 70 74.3
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 6.1e-16 89.0 70 74.3
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 6.1e-16 89.0 70 72.9
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 7.9e-16 88.6 70 72.9
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 7.9e-16 88.6 70 74.3
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 7.9e-16 88.6 81 67.9
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 7.9e-16 88.6 70 72.9
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 7.9e-16 88.6 70 72.9
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.0e-15 88.2 70 74.3
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 1.4e-15 87.8 70 72.9
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 1.8e-15 87.4 70 74.3
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 2.3e-15 87.0 70 72.9
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 2.3e-15 87.0 70 72.9
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 2.3e-15 87.0 70 71.4
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 3.0e-15 86.7 70 71.4
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 3.0e-15 86.7 70 72.9
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 3.0e-15 86.7 70 74.3
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 3.0e-15 86.7 70 71.4
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 3.9e-15 86.3 70 74.3
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 5.1e-15 85.9 70 71.4
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 5.1e-15 85.9 69 73.9
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 5.1e-15 85.9 70 72.9
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 5.1e-15 85.9 70 72.9
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 5.1e-15 85.9 70 72.9
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 6.7e-15 85.5 70 71.4
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 6.7e-15 85.5 70 72.9
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 6.7e-15 85.5 70 72.9
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 6.7e-15 85.5 70 71.4
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 6.7e-15 85.5 70 71.4
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 6.7e-15 85.5 70 71.4
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 6.7e-15 85.5 70 70.0
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 6.7e-15 85.5 70 71.4
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 8.8e-15 85.1 70 72.9
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 8.8e-15 85.1 70 72.9
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 8.8e-15 85.1 70 71.4
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 8.8e-15 85.1 81 66.7
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 8.8e-15 85.1 81 66.7
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 8.8e-15 85.1 81 66.7
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 8.8e-15 85.1 81 66.7
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 8.8e-15 85.1 70 72.9
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 1.1e-14 84.7 70 72.9
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 1.1e-14 84.7 70 71.4
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 1.1e-14 84.7 70 72.9
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.1e-14 84.7 70 71.4
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.1e-14 84.7 70 71.4
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 1.1e-14 84.7 70 71.4
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 1.1e-14 84.7 70 71.4
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 1.5e-14 84.3 70 71.4
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.5e-14 84.3 70 71.4
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 2.0e-14 84.0 70 71.4
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 2.0e-14 84.0 70 71.4
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 2.0e-14 84.0 70 71.4
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.0e-14 84.0 72 69.4
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 2.5e-14 83.6 70 71.4
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 2.5e-14 83.6 70 71.4
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 2.5e-14 83.6 70 70.0
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 2.5e-14 83.6 70 71.4
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 3.3e-14 83.2 70 71.4
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.3e-14 83.2 70 71.4
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 3.3e-14 83.2 70 71.4
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 3.3e-14 83.2 70 71.4
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 4.3e-14 82.8 70 71.4
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 4.3e-14 82.8 70 68.6
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 7.4e-14 82.0 70 71.4
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 9.7e-14 81.6 70 70.0
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 9.7e-14 81.6 70 67.1
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 1.3e-13 81.3 70 68.6
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 1.3e-13 81.3 70 70.0
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 1.7e-13 80.9 71 67.6
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 2.2e-13 80.5 70 72.9
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 2.2e-13 80.5 72 66.7
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 2.8e-13 80.1 70 68.6
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 2.8e-13 80.1 71 67.6
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 2.8e-13 80.1 70 67.1
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 3.7e-13 79.7 70 68.6
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 3.7e-13 79.7 70 68.6
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 3.7e-13 79.7 70 68.6
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 3.7e-13 79.7 70 68.6
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 3.7e-13 79.7 70 68.6
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 4.8e-13 79.3 70 65.7
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 4.8e-13 79.3 70 65.7
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 4.8e-13 79.3 70 65.7
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 4.8e-13 79.3 72 65.3
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 4.8e-13 79.3 72 65.3
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 6.3e-13 79.0 70 67.1
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 6.3e-13 79.0 70 68.6
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 6.3e-13 79.0 72 65.3
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 6.3e-13 79.0 70 70.0
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 8.2e-13 78.6 70 70.0
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 1.1e-12 78.2 71 67.6
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 1.1e-12 78.2 70 67.1
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.4e-12 77.8 70 68.6
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 1.8e-12 77.4 70 68.6
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 1.8e-12 77.4 70 68.6
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 1.8e-12 77.4 70 68.6
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 2.4e-12 77.0 70 68.6
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 2.4e-12 77.0 70 68.6
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 2.4e-12 77.0 70 68.6
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 3.1e-12 76.6 71 66.2
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 3.1e-12 76.6 71 66.2
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 3.1e-12 76.6 70 65.7
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 3.1e-12 76.6 70 65.7
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 5.3e-12 75.9 70 67.1
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 6.9e-12 75.5 70 62.9
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 6.9e-12 75.5 70 64.3
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.2e-11 74.7 70 64.3
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 1.2e-11 74.7 70 64.3
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.5e-11 74.3 70 64.3
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.5e-11 74.3 70 64.3
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 3.4e-11 73.2 61 63.9
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 3.4e-11 73.2 70 65.7
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 4.5e-11 72.8 70 67.1
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 1.0e-10 71.6 70 65.7
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 1.0e-10 71.6 70 65.7
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 1.0e-10 71.6 70 65.7
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 1.0e-10 71.6 70 65.7
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 1.0e-10 71.6 70 65.7
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.3e-10 71.2 70 67.1
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 2.2e-10 70.5 71 64.8
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 3.8e-10 69.7 70 65.7
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 5.0e-10 69.3 70 57.1
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 6.5e-10 68.9 70 64.3
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.1e-09 68.2 71 54.9
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 2.5e-09 67.0 70 64.3
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 2.5e-09 67.0 70 64.3
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 2.5e-09 67.0 70 64.3
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.5e-09 67.0 70 60.0
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 4.2e-09 66.2 70 58.6
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 5.5e-09 65.9 55 72.7
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 7.2e-09 65.5 69 59.4
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.2e-09 65.5 70 60.0
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 9.4e-09 65.1 70 58.6
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 1.2e-08 64.7 70 55.7
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.6e-08 64.3 70 57.1
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 2.1e-08 63.9 70 57.1
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.6e-08 63.2 70 57.1
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.1e-06 58.2 70 51.4
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 7.4e-06 55.5 70 50.0


User provided reference genes

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