Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold109G31146 Striga asiatica HOM05D000501 ORTHO05D399511 3.1e-84 315.1 158 100.0
SGA_v2.0_scaffold173G39129 Striga asiatica HOM05D000501 ORTHO05D000376 2.8e-16 89.4 61 82.0
Oeu019821.1 Olea europaea HOM05D000501 ORTHO05D000376 1.1e-12 77.4 65 64.6
MSTRG.25637 Avicennia marina HOM05D000501 ORTHO05D000376 3.2e-12 75.9 52 71.2
MSTRG.11950 Avicennia marina HOM05D000501 ORTHO05D000376 1.6e-11 73.6 52 71.2
Lj2A176G38 Lonicera japonica HOM05D000501 ORTHO05D000376 3.5e-11 72.4 58 67.2
CSS0001287 Camellia sinensis var. sinensis HOM05D000501 ORTHO05D000376 4.6e-11 72.0 55 69.1
CSS0043661 Camellia sinensis var. sinensis HOM05D000501 ORTHO05D000376 4.6e-11 72.0 55 69.1
CSS0047680 Camellia sinensis var. sinensis HOM05D000501 ORTHO05D000376 6.0e-11 71.6 58 62.1
Cc08_g15360 Coffea canephora HOM05D000501 ORTHO05D000376 6.0e-11 71.6 51 72.5
Hma1.2p1_0216F.1_g091160 Hydrangea macrophylla HOM05D000501 ORTHO05D000376 1.0e-10 70.9 55 69.1
Migut.O00661 Erythranthe guttata HOM05D000501 ORTHO05D000376 1.7e-10 70.1 64 60.9
Dinv37586 Davidia involucrata HOM05D000501 ORTHO05D000376 2.3e-10 69.7 53 64.2
Manes.02G016200 Manihot esculenta HOM05D000501 ORTHO05D000376 2.3e-10 69.7 52 69.2
Lsat_1_v5_gn_3_11620 Lactuca sativa HOM05D000501 ORTHO05D000376 3.0e-10 69.3 51 68.6
HanXRQChr06g0166241 Helianthus annuus HOM05D000501 ORTHO05D000376 5.1e-10 68.6 56 62.5
ECA246G1480 Erigeron canadensis HOM05D000501 ORTHO05D000376 6.6e-10 68.2 68 54.4
CANSAT21G1013 Cannabis sativa HOM05D000501 ORTHO05D000376 1.1e-09 67.4 58 62.1
TWI15G0637 Tripterygium wilfordii HOM05D000501 ORTHO05D000376 1.1e-09 67.4 48 70.8
Cpa.g.sc201.1 Carica papaya HOM05D000501 ORTHO05D000376 2.5e-09 66.2 54 66.7
Ca_10956_v3 Cicer arietinum L. HOM05D000501 ORTHO05D000376 2.5e-09 66.2 50 72.0
Nn7g37301 Nelumbo nucifera HOM05D000501 ORTHO05D000376 2.5e-09 66.2 54 63.0
Sabra03G0095600 Salix brachista HOM05D000501 ORTHO05D000376 2.5e-09 66.2 54 68.5
Atru.chr9.2101 Acer truncatum HOM05D000501 ORTHO05D000376 3.3e-09 65.9 49 69.4
DCAR_008349 Daucus carota HOM05D000501 ORTHO05D000376 3.3e-09 65.9 68 54.4
Manes.01G051545 Manihot esculenta HOM05D000501 ORTHO05D000376 4.3e-09 65.5 52 65.4
unitig_32.g11603 Utricularia gibba HOM05D000501 ORTHO05D000376 5.6e-09 65.1 73 53.4
arahy.Tifrunner.gnm1.ann1.CW6LLE Arachis hypogaea HOM05D000501 ORTHO05D000376 7.3e-09 64.7 49 67.3
arahy.Tifrunner.gnm1.ann1.IY723J Arachis hypogaea HOM05D000501 ORTHO05D000376 7.3e-09 64.7 49 67.3
Phvul.002G293700 Phaseolus vulgaris HOM05D000501 ORTHO05D000376 7.3e-09 64.7 54 68.5
VMungo0251G0501 Vigna mungo HOM05D000501 ORTHO05D000376 9.5e-09 64.3 52 69.2
Ciclev10018741m.g Citrus clementina HOM05D000501 ORTHO05D000376 1.2e-08 63.9 49 69.4
Dinv38892 Davidia involucrata HOM05D000501 ORTHO05D000376 1.2e-08 63.9 52 63.5
Potri.003G133300 Populus trichocarpa HOM05D000501 ORTHO05D000376 1.2e-08 63.9 65 60.0
TAR375G0814 Trochodendron aralioides HOM05D000501 ORTHO05D000376 1.2e-08 63.9 52 63.5
unitig_748.g8122 Utricularia gibba HOM05D000501 ORTHO05D000376 1.2e-08 63.9 48 64.6
Actinidia10614 Actinidia chinensis HOM05D000501 ORTHO05D000376 1.6e-08 63.5 57 57.9
Rhsim02G0236300 Rhododendron simsii HOM05D000501 ORTHO05D000376 1.6e-08 63.5 48 68.8
Potri.001G098300 Populus trichocarpa HOM05D000501 ORTHO05D000376 2.1e-08 63.2 53 67.9
vmacro11414 Vaccinium macrocarpon HOM05D000501 ORTHO05D000376 2.1e-08 63.2 52 63.5
MD06G1093000 Malus domestica HOM05D000501 ORTHO05D000376 2.8e-08 62.8 58 62.1
PGR042G1034 Punica granatum HOM05D000501 ORTHO05D000376 2.8e-08 62.8 54 61.1
Eucgr.E00785 Eucalyptus grandis HOM05D000501 ORTHO05D000376 4.7e-08 62.0 50 66.0
Glyma.05G212500 Glycine max HOM05D000501 ORTHO05D000376 4.7e-08 62.0 52 65.4
Glyma.08G018900 Glycine max HOM05D000501 ORTHO05D000376 4.7e-08 62.0 52 65.4
GSVIVG01019429001 Vitis vinifera HOM05D000501 ORTHO05D000376 4.7e-08 62.0 53 67.9
Aa31LG2G1130 Aethionema arabicum HOM05D000501 ORTHO05D000376 6.2e-08 61.6 52 63.5
AT1G64060 Arabidopsis thaliana HOM05D000501 ORTHO05D000376 8.1e-08 61.2 54 63.0
FAN04G2086 Fragaria x ananassa HOM05D000501 ORTHO05D000376 8.1e-08 61.2 53 64.2
FAN04G2876 Fragaria x ananassa HOM05D000501 ORTHO05D000376 8.1e-08 61.2 53 64.2
BcaC04g22527 Brassica carinata HOM05D000501 ORTHO05D000376 1.1e-07 60.8 55 60.0
A09p15080 Brassica napus HOM05D000501 ORTHO05D000376 1.1e-07 60.8 55 60.0
C09p18200 Brassica napus HOM05D000501 ORTHO05D000376 1.1e-07 60.8 55 60.0
BolC9t54716H Brassica oleracea HOM05D000501 ORTHO05D000376 1.1e-07 60.8 55 60.0
BraA09t37151Z Brassica rapa HOM05D000501 ORTHO05D000376 1.1e-07 60.8 55 60.0
CARHR046890 Cardamine hirsuta HOM05D000501 ORTHO05D000376 1.1e-07 60.8 52 63.5
Oeu059574.2 Olea europaea HOM05D000501 ORTHO05D000376 1.1e-07 60.8 54 64.8
RcHm_v2.0_Chr7g0196471 Rosa chinensis HOM05D000501 ORTHO05D000376 1.1e-07 60.8 87 44.8
MELO3C005719.2 Cucumis melo HOM05D000501 ORTHO05D000376 1.4e-07 60.5 52 63.5
FvH4_5g03310 Fragaria vesca HOM05D000501 ORTHO05D000376 1.4e-07 60.5 53 64.2
FAN08G3183 Fragaria x ananassa HOM05D000501 ORTHO05D000376 1.4e-07 60.5 87 46.0
FAN13G0252 Fragaria x ananassa HOM05D000501 ORTHO05D000376 1.4e-07 60.5 87 46.0
FAN13G0759 Fragaria x ananassa HOM05D000501 ORTHO05D000376 1.4e-07 60.5 87 46.0
FAN18G1707 Fragaria x ananassa HOM05D000501 ORTHO05D000376 1.4e-07 60.5 53 64.2
Medtr8g099030 Medicago truncatula HOM05D000501 ORTHO05D000376 1.4e-07 60.5 49 67.3
Psat7g029200 Pisum sativum HOM05D000501 ORTHO05D000376 1.4e-07 60.5 51 64.7
CAN.G532.76 Capsicum annuum HOM05D000501 ORTHO05D000376 1.8e-07 60.1 47 70.2
CsaV3_5G002350 Cucumis sativus L. HOM05D000501 ORTHO05D000376 1.8e-07 60.1 52 63.5
CiPaw.11G129000 Carya illinoinensis HOM05D000501 ORTHO05D000376 2.3e-07 59.7 51 64.7
COL.COLO4_08346 Corchorus olitorius HOM05D000501 ORTHO05D000376 2.3e-07 59.7 51 64.7
Carub.0002s0074 Capsella rubella HOM05D000501 ORTHO05D000376 3.1e-07 59.3 52 61.5
LjContig00312_ERROPOS870357g0020670 Lotus japonicus HOM05D000501 ORTHO05D000376 3.1e-07 59.3 55 60.0
AL2G11000 Arabidopsis lyrata HOM05D000501 ORTHO05D000376 4.0e-07 58.9 49 63.3
Prupe.5G107400 Prunus persica HOM05D000501 ORTHO05D000376 4.0e-07 58.9 52 63.5
Sabra01G0073600 Salix brachista HOM05D000501 ORTHO05D000376 4.0e-07 58.9 54 63.0
Solyc08g081690.3 Solanum lycopersicum HOM05D000501 ORTHO05D000376 4.0e-07 58.9 52 63.5
Sopen08g029980 Solanum pennellii HOM05D000501 ORTHO05D000376 4.0e-07 58.9 54 63.0
THA.LOC104809360 Tarenaya hassleriana HOM05D000501 ORTHO05D000376 4.0e-07 58.9 47 68.1
BcaB07g31430 Brassica carinata HOM05D000501 ORTHO05D000376 5.2e-07 58.5 56 57.1
CiPaw.12G088400 Carya illinoinensis HOM05D000501 ORTHO05D000376 5.2e-07 58.5 48 66.7
Duzib068G0417 Durio zibethinus HOM05D000501 ORTHO05D000376 5.2e-07 58.5 48 66.7
Duzib205G1747 Durio zibethinus HOM05D000501 ORTHO05D000376 5.2e-07 58.5 48 66.7
Gohir.A02G104800 Gossypium hirsutum HOM05D000501 ORTHO05D000376 5.2e-07 58.5 48 66.7
Gohir.D03G079000 Gossypium hirsutum HOM05D000501 ORTHO05D000376 5.2e-07 58.5 48 66.7
Gorai.003G085100 Gossypium raimondii HOM05D000501 ORTHO05D000376 5.2e-07 58.5 48 66.7
Thecc.03G287500 Theobroma cacao HOM05D000501 ORTHO05D000376 5.2e-07 58.5 48 66.7
arahy.Tifrunner.gnm1.ann1.0IH89K Arachis hypogaea HOM05D000501 ORTHO05D000376 6.8e-07 58.2 57 59.6
ClCG01G002290 Citrullus lanatus HOM05D000501 ORTHO05D000376 6.8e-07 58.2 52 61.5
Peaxi162Scf00074g01630 Petunia axillaris HOM05D000501 ORTHO05D000376 6.8e-07 58.2 51 62.7
Zm00001eb154010 Zea mays HOM05D000501 ORTHO05D000376 6.8e-07 58.2 48 68.8
Thhalv10023240m.g Eutrema salsugineum HOM05D000501 ORTHO05D000376 8.9e-07 57.8 50 62.0
Nitab4.5_0000966g0080 Nicotiana tabacum HOM05D000501 ORTHO05D000376 8.9e-07 57.8 52 61.5
Nitab4.5_0012300g0010 Nicotiana tabacum HOM05D000501 ORTHO05D000376 8.9e-07 57.8 52 61.5
HPP92_005477 Vanilla planifolia HOM05D000501 ORTHO05D000376 8.9e-07 57.8 47 66.0
Glyma.01G222700 Glycine max HOM05D000501 ORTHO05D000376 1.5e-06 57.0 50 62.0
Sp2g00650 Schrenkiella parvula HOM05D000501 ORTHO05D000376 1.5e-06 57.0 50 60.0
CsaV3_4G006160 Cucumis sativus L. HOM05D000501 ORTHO05D000376 2.0e-06 56.6 51 60.8
Gohir.A12G233100 Gossypium hirsutum HOM05D000501 ORTHO05D000376 2.0e-06 56.6 48 64.6
Gohir.D12G234200 Gossypium hirsutum HOM05D000501 ORTHO05D000376 2.0e-06 56.6 48 64.6
Gorai.008G250500 Gossypium raimondii HOM05D000501 ORTHO05D000376 2.0e-06 56.6 48 64.6
PSO170G3984 Papaver somniferum HOM05D000501 ORTHO05D000376 2.0e-06 56.6 56 58.9
ClCG07G007770 Citrullus lanatus HOM05D000501 ORTHO05D000376 2.6e-06 56.2 55 60.0
Lalb_Chr05g0224431 Lupinus albus HOM05D000501 ORTHO05D000376 2.6e-06 56.2 46 67.4
Sed0017953 Sechium edule HOM05D000501 ORTHO05D000376 2.6e-06 56.2 52 59.6
Lj4g0012002 Lotus japonicus HOM05D000501 ORTHO05D000376 3.4e-06 55.8 47 66.0
Os01g0734200 Oryza sativa ssp. japonica HOM05D000501 ORTHO05D000376 3.4e-06 55.8 61 55.7
Duzib084G0857 Durio zibethinus HOM05D000501 ORTHO05D000376 4.4e-06 55.5 48 62.5
arahy.Tifrunner.gnm1.ann1.NY0GHN Arachis hypogaea HOM05D000501 ORTHO05D000376 5.8e-06 55.1 48 64.6
Os05g0528000 Oryza sativa ssp. japonica HOM05D000501 ORTHO05D000376 5.8e-06 55.1 48 64.6
PSO063G6995 Papaver somniferum HOM05D000501 ORTHO05D000376 5.8e-06 55.1 58 58.6
QL02p033146 Quercus lobata HOM05D000501 ORTHO05D000376 5.8e-06 55.1 49 61.2
MELO3C016333.2 Cucumis melo HOM05D000501 ORTHO05D000376 7.6e-06 54.7 51 60.8
MD14G1113700 Malus domestica HOM05D000501 ORTHO05D000376 7.6e-06 54.7 50 62.0
Glyma.11G020700 Glycine max HOM05D000501 ORTHO05D000376 9.9e-06 54.3 50 60.0
Phvul.002G160700 Phaseolus vulgaris HOM05D000501 ORTHO05D000376 9.9e-06 54.3 50 58.0


User provided reference genes

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