Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold109G31125 Striga asiatica HOM05D000421 ORTHO05D001007 1.5e-138 496.1 234 100.0
Migut.F02139 Erythranthe guttata HOM05D000421 ORTHO05D001007 7.7e-23 111.7 97 59.8
SalBow1G3496 Salvia bowleyana HOM05D000421 ORTHO05D001007 4.0e-19 99.4 99 54.5
MSTRG.27381 Avicennia marina HOM05D000421 ORTHO05D001007 3.1e-16 89.7 108 45.4
Dinv06975 Davidia involucrata HOM05D000421 ORTHO05D001007 2.3e-14 83.6 99 47.5
Solyc11g008930.3 Solanum lycopersicum HOM05D000421 ORTHO05D001007 1.9e-13 80.5 93 49.5
Sopen11g004710 Solanum pennellii HOM05D000421 ORTHO05D001007 2.5e-13 80.1 93 49.5
Cc09_g03510 Coffea canephora HOM05D000421 ORTHO05D001007 7.2e-13 78.6 95 49.5
Dinv29112 Davidia involucrata HOM05D000421 ORTHO05D001007 2.8e-12 76.6 99 42.4
Actinidia38925 Actinidia chinensis HOM05D000421 ORTHO05D001007 2.6e-10 70.1 97 40.2
CAN.G1177.11 Capsicum annuum HOM05D000421 ORTHO05D001007 3.4e-10 69.7 56 60.7
Nitab4.5_0012961g0020 Nicotiana tabacum HOM05D000421 ORTHO05D001007 3.4e-10 69.7 63 55.6
PGR031G3074 Punica granatum HOM05D000421 ORTHO05D001007 5.7e-10 68.9 79 44.3
Actinidia34766 Actinidia chinensis HOM05D000421 ORTHO05D001007 9.8e-10 68.2 97 39.2
Nn3g18509 Nelumbo nucifera HOM05D000421 ORTHO05D001007 1.3e-09 67.8 107 37.4
Nitab4.5_0001653g0070 Nicotiana tabacum HOM05D000421 ORTHO05D001007 2.2e-09 67.0 35 80.0
Oeu040491.1 Olea europaea HOM05D000421 ORTHO05D001007 3.7e-09 66.2 48 60.4
Peaxi162Scf00344g01113 Petunia axillaris HOM05D000421 ORTHO05D001007 3.7e-09 66.2 33 84.8
GSVIVG01019122001 Vitis vinifera HOM05D000421 ORTHO05D001007 3.7e-09 66.2 97 43.3
A04p09110 Brassica napus HOM05D000421 ORTHO05D001007 4.9e-09 65.9 104 35.6
BraA04t16605Z Brassica rapa HOM05D000421 ORTHO05D001007 4.9e-09 65.9 104 35.6
CANSAT54G0255 Cannabis sativa HOM05D000421 ORTHO05D001007 4.9e-09 65.9 104 40.4
AUR62000321 Chenopodium quinoa HOM05D000421 ORTHO05D001007 4.9e-09 65.9 34 82.4
AUR62006667 Chenopodium quinoa HOM05D000421 ORTHO05D001007 4.9e-09 65.9 34 82.4
PSO017G7196 Papaver somniferum HOM05D000421 ORTHO05D001007 6.3e-09 65.5 75 46.7
PSO675G2034 Papaver somniferum HOM05D000421 ORTHO05D001007 6.3e-09 65.5 75 46.7
EL10Ac4g09978 Beta vulgaris HOM05D000421 ORTHO05D001007 8.3e-09 65.1 34 82.4
Cfa006271 Carpinus fangiana HOM05D000421 ORTHO05D001007 1.1e-08 64.7 75 46.7
Gohir.D04G026300 Gossypium hirsutum HOM05D000421 ORTHO05D001007 1.1e-08 64.7 57 52.6
Gorai.012G028900 Gossypium raimondii HOM05D000421 ORTHO05D001007 1.1e-08 64.7 57 52.6
Aa31LG9G5570 Aethionema arabicum HOM05D000421 ORTHO05D001007 1.4e-08 64.3 130 31.5
arahy.Tifrunner.gnm1.ann1.5R7M77 Arachis hypogaea HOM05D000421 ORTHO05D001007 1.4e-08 64.3 72 50.0
arahy.Tifrunner.gnm1.ann1.R60S0X Arachis hypogaea HOM05D000421 ORTHO05D001007 1.4e-08 64.3 72 50.0
CSS0004226 Camellia sinensis var. sinensis HOM05D000421 ORTHO05D001007 1.4e-08 64.3 73 46.6
Actinidia01626 Actinidia chinensis HOM05D000421 ORTHO05D001007 1.8e-08 63.9 70 47.1
Actinidia26188 Actinidia chinensis HOM05D000421 ORTHO05D001007 1.8e-08 63.9 70 48.6
Gohir.A05G390900 Gossypium hirsutum HOM05D000421 ORTHO05D001007 1.8e-08 63.9 57 50.9
Manes.08G104300 Manihot esculenta HOM05D000421 ORTHO05D001007 1.8e-08 63.9 73 45.2
TAR362G1237 Trochodendron aralioides HOM05D000421 ORTHO05D001007 1.8e-08 63.9 39 71.8
Atru.chr6.352 Acer truncatum HOM05D000421 ORTHO05D001007 2.4e-08 63.5 61 50.8
BcaC02g09461 Brassica carinata HOM05D000421 ORTHO05D001007 2.4e-08 63.5 104 34.6
Atru.chr6.401 Acer truncatum HOM05D000421 ORTHO05D001007 3.1e-08 63.2 61 50.8
FAN09G3637 Fragaria x ananassa HOM05D000421 ORTHO05D001007 3.1e-08 63.2 71 45.1
FAN14G3856 Fragaria x ananassa HOM05D000421 ORTHO05D001007 3.1e-08 63.2 71 45.1
Thecc.05G201100 Theobroma cacao HOM05D000421 ORTHO05D001007 3.1e-08 63.2 59 50.8
Cc02_g23450 Coffea canephora HOM05D000421 ORTHO05D001007 4.1e-08 62.8 99 41.4
FvH4_6g00590 Fragaria vesca HOM05D000421 ORTHO05D001007 4.1e-08 62.8 71 45.1
Nn1g09789 Nelumbo nucifera HOM05D000421 ORTHO05D001007 4.1e-08 62.8 81 44.4
Psat6g052240 Pisum sativum HOM05D000421 ORTHO05D001007 4.1e-08 62.8 75 44.0
Cpa.g.sc113.3 Carica papaya HOM05D000421 ORTHO05D001007 5.4e-08 62.4 36 75.0
COL.COLO4_27390 Corchorus olitorius HOM05D000421 ORTHO05D001007 5.4e-08 62.4 61 50.8
Hund07336 Selenicereus undatus HOM05D000421 ORTHO05D001007 5.4e-08 62.4 49 61.2
Sc07g0005040 Simmondsia chinensis HOM05D000421 ORTHO05D001007 5.4e-08 62.4 70 47.1
TWI75G0657 Tripterygium wilfordii HOM05D000421 ORTHO05D001007 5.4e-08 62.4 100 41.0
Actinidia00155 Actinidia chinensis HOM05D000421 ORTHO05D001007 7.0e-08 62.0 70 42.9
BcaB03g16186 Brassica carinata HOM05D000421 ORTHO05D001007 7.0e-08 62.0 104 33.7
Haze_04542 Corylus avellana HOM05D000421 ORTHO05D001007 7.0e-08 62.0 72 47.2
Eucgr.I02788 Eucalyptus grandis HOM05D000421 ORTHO05D001007 7.0e-08 62.0 73 43.8
Gohir.A04G134300 Gossypium hirsutum HOM05D000421 ORTHO05D001007 7.0e-08 62.0 85 41.2
Manes.09G184701 Manihot esculenta HOM05D000423 ORTHO05D000284 7.0e-08 62.0 36 69.4
Prupe.1G583200 Prunus persica HOM05D000421 ORTHO05D001007 7.0e-08 62.0 74 45.9
C04p43030 Brassica napus HOM05D000421 ORTHO05D001007 9.2e-08 61.6 104 34.6
BolC4t25881H Brassica oleracea HOM05D000421 ORTHO05D001007 9.2e-08 61.6 104 34.6
Phvul.008G055100 Phaseolus vulgaris HOM05D000421 ORTHO05D001007 9.2e-08 61.6 83 38.6
THA.LOC104826643 Tarenaya hassleriana HOM05D000421 ORTHO05D001007 9.2e-08 61.6 65 46.2
HanXRQChr06g0180741 Helianthus annuus HOM05D000421 ORTHO05D001007 1.2e-07 61.2 95 40.0
MD12G1259600 Malus domestica HOM05D000421 ORTHO05D001007 1.2e-07 61.2 101 34.7
Sp7g09540 Schrenkiella parvula HOM05D000421 ORTHO05D001007 1.2e-07 61.2 102 33.3
CiPaw.05G002400 Carya illinoinensis HOM05D000421 ORTHO05D001007 1.6e-07 60.8 79 40.5
ClCG03G010860 Citrullus lanatus HOM05D000421 ORTHO05D001007 1.6e-07 60.8 71 47.9
MELO3C010070.2 Cucumis melo HOM05D000421 ORTHO05D001007 1.6e-07 60.8 69 46.4
Lj5g0003809 Lotus japonicus HOM05D000421 ORTHO05D001007 1.6e-07 60.8 104 40.4
EL10Ac5g10590 Beta vulgaris HOM05D000421 ORTHO05D001007 2.0e-07 60.5 50 52.0
CsaV3_5G014000 Cucumis sativus L. HOM05D000421 ORTHO05D001007 2.0e-07 60.5 96 38.5
Eucgr.H01384 Eucalyptus grandis HOM05D000421 ORTHO05D001007 2.0e-07 60.5 71 40.8
Nitab4.5_0002240g0060 Nicotiana tabacum HOM05D000421 ORTHO05D001007 2.0e-07 60.5 77 44.2
TWI23G0288 Tripterygium wilfordii HOM05D000421 ORTHO05D001007 2.0e-07 60.5 96 37.5
MD04G1243900 Malus domestica HOM05D000421 ORTHO05D001007 2.7e-07 60.1 95 34.7
TWI36G1749 Tripterygium wilfordii HOM05D000421 ORTHO05D001007 2.7e-07 60.1 105 34.3
Aqoxy2G04060 Aquilegia oxysepala HOM05D000421 ORTHO05D001007 3.5e-07 59.7 80 45.0
arahy.Tifrunner.gnm1.ann1.GZJ0B6 Arachis hypogaea HOM05D000421 ORTHO05D001007 3.5e-07 59.7 64 42.2
CsaV3_1G044610 Cucumis sativus L. HOM05D000421 ORTHO05D001007 3.5e-07 59.7 71 46.5
FAN04G1491 Fragaria x ananassa HOM05D000421 ORTHO05D001007 3.5e-07 59.7 95 36.8
Lj2A1112T46 Lonicera japonica HOM05D000421 ORTHO05D001007 3.5e-07 59.7 38 68.4
MD15G1440900 Malus domestica HOM05D000421 ORTHO05D001007 3.5e-07 59.7 56 53.6
Peaxi162Scf00841g00024 Petunia axillaris HOM05D000421 ORTHO05D001007 3.5e-07 59.7 33 75.8
arahy.Tifrunner.gnm1.ann1.2GL6KB Arachis hypogaea HOM05D000421 ORTHO05D001007 4.5e-07 59.3 64 42.2
Haze_10007 Corylus avellana HOM05D000421 ORTHO05D001007 4.5e-07 59.3 35 71.4
Glyma.18G241100 Glycine max HOM05D000421 ORTHO05D001007 4.5e-07 59.3 78 39.7
TAR365G0705 Trochodendron aralioides HOM05D000421 ORTHO05D001007 4.5e-07 59.3 33 75.8
Atru.chr12.1797 Acer truncatum HOM05D000421 ORTHO05D001007 5.9e-07 58.9 39 61.5
Ah.02g111040 Amaranthus hybridus HOM05D003050 ORTHO05D003513 5.9e-07 58.9 38 55.3
Carub.0007s2997 Capsella rubella HOM05D000421 ORTHO05D001007 5.9e-07 58.9 68 41.2
CiPaw.07G079400 Carya illinoinensis HOM05D000421 ORTHO05D001007 5.9e-07 58.9 78 43.6
DCAR_023851 Daucus carota HOM05D000421 ORTHO05D001007 5.9e-07 58.9 48 56.2
Gohir.D08G245000 Gossypium hirsutum HOM05D000421 ORTHO05D001007 5.9e-07 58.9 34 67.6
Gorai.004G261500 Gossypium raimondii HOM05D000421 ORTHO05D001007 5.9e-07 58.9 34 67.6
Potri.019G053000 Populus trichocarpa HOM05D000421 ORTHO05D001007 5.9e-07 58.9 34 67.6
QL02p102422 Quercus lobata HOM05D000421 ORTHO05D001007 5.9e-07 58.9 41 61.0
RcHm_v2.0_Chr7g0220251 Rosa chinensis HOM05D000421 ORTHO05D001007 5.9e-07 58.9 73 41.1
Sabra19G0062500 Salix brachista HOM05D000421 ORTHO05D001007 5.9e-07 58.9 76 42.1
Sed0000103 Sechium edule HOM05D000421 ORTHO05D001007 5.9e-07 58.9 57 49.1
CARHR218170 Cardamine hirsuta HOM05D000421 ORTHO05D001007 7.8e-07 58.5 97 35.1
Gohir.D04G177500 Gossypium hirsutum HOM05D000421 ORTHO05D001007 7.8e-07 58.5 74 41.9
Gorai.012G170400 Gossypium raimondii HOM05D000421 ORTHO05D001007 7.8e-07 58.5 74 41.9
Sc17g0001590 Simmondsia chinensis HOM05D003050 ORTHO05D003513 7.8e-07 58.5 38 63.2
THA.LOC104804705 Tarenaya hassleriana HOM05D000421 ORTHO05D001007 7.8e-07 58.5 65 44.6
ClCG11G000410 Citrullus lanatus HOM05D000421 ORTHO05D001007 1.0e-06 58.2 78 39.7
FAN02G0982 Fragaria x ananassa HOM05D000421 ORTHO05D206294 1.0e-06 58.2 104 33.7
MD08G1245700 Malus domestica HOM05D000421 ORTHO05D001007 1.0e-06 58.2 73 42.5
Sopen09g016020 Solanum pennellii HOM05D000421 ORTHO05D001007 1.0e-06 58.2 37 64.9
Duzib133G1190 Durio zibethinus HOM05D000421 ORTHO05D001007 1.3e-06 57.8 57 43.9
QL01p048960 Quercus lobata HOM05D000421 ORTHO05D001007 1.3e-06 57.8 73 46.6
PGSC0003DMG400029169 Solanum tuberosum HOM05D000421 ORTHO05D001007 1.3e-06 57.8 33 72.7
AUR62029917 Chenopodium quinoa HOM05D000421 ORTHO05D001007 1.7e-06 57.4 70 41.4
COL.COLO4_06892 Corchorus olitorius HOM05D000421 ORTHO05D001007 1.7e-06 57.4 36 63.9
Duzib248G1382 Durio zibethinus HOM05D000421 ORTHO05D001007 1.7e-06 57.4 73 42.5
Nitab4.5_0001057g0040 Nicotiana tabacum HOM05D000421 ORTHO05D001007 1.7e-06 57.4 31 74.2
Nitab4.5_0001129g0070 Nicotiana tabacum HOM05D000421 ORTHO05D001007 1.7e-06 57.4 31 74.2
PGR142G0493 Punica granatum HOM05D000421 ORTHO05D001007 1.7e-06 57.4 109 36.7
QL09p047601 Quercus lobata HOM05D000421 ORTHO05D001007 1.7e-06 57.4 36 69.4
Hund02804 Selenicereus undatus HOM05D000421 ORTHO05D001007 1.7e-06 57.4 38 63.2
Solyc01g103170.4 Solanum lycopersicum HOM05D000421 ORTHO05D001007 1.7e-06 57.4 31 74.2
Sopen01g045580 Solanum pennellii HOM05D000421 ORTHO05D001007 1.7e-06 57.4 31 74.2
GSVIVG01023201001 Vitis vinifera HOM05D000421 ORTHO05D001007 1.7e-06 57.4 36 66.7
Dinv29668 Davidia involucrata HOM05D000421 ORTHO05D001007 2.3e-06 57.0 30 80.0
Gohir.A11G143700 Gossypium hirsutum HOM05D000421 ORTHO05D001007 2.3e-06 57.0 36 66.7
Gohir.D11G150100 Gossypium hirsutum HOM05D000421 ORTHO05D001007 2.3e-06 57.0 36 66.7
Gorai.007G161000 Gossypium raimondii HOM05D000421 ORTHO05D001007 2.3e-06 57.0 36 66.7
PGSC0003DMG400024906 Solanum tuberosum HOM05D000421 ORTHO05D001007 2.3e-06 57.0 31 71.0
AT4G12840 Arabidopsis thaliana HOM05D000421 ORTHO05D001007 2.9e-06 56.6 68 41.2
Ciclev10001347m.g Citrus clementina HOM05D000421 ORTHO05D001007 2.9e-06 56.6 104 36.5
Cc01_g15910 Coffea canephora HOM05D000421 ORTHO05D001007 2.9e-06 56.6 75 40.0
FAN05G5596 Fragaria x ananassa HOM05D000421 ORTHO05D001007 2.9e-06 56.6 79 40.5
HanXRQChr12g0363991 Helianthus annuus HOM05D000421 ORTHO05D001007 2.9e-06 56.6 31 77.4
SalBow3G2490 Salvia bowleyana HOM05D000421 ORTHO05D001007 2.9e-06 56.6 38 60.5
SGA_v2.0_scaffold100G29545 Striga asiatica HOM05D000421 ORTHO05D001007 2.9e-06 56.6 31 67.7
Nitab4.5_0005686g0020 Nicotiana tabacum HOM05D000421 ORTHO05D001007 3.8e-06 56.2 32 75.0
Oeu000150.1 Olea europaea HOM05D000421 ORTHO05D001007 3.8e-06 56.2 31 74.2
Peaxi162Scf00011g01635 Petunia axillaris HOM05D000421 ORTHO05D001007 3.8e-06 56.2 31 71.0
Phvul.007G118700 Phaseolus vulgaris HOM05D000421 ORTHO05D001007 3.8e-06 56.2 69 37.7
QL02p103058 Quercus lobata HOM05D000421 ORTHO05D001007 3.8e-06 56.2 41 58.5
Thecc.01G208100 Theobroma cacao HOM05D000421 ORTHO05D001007 3.8e-06 56.2 32 71.9
Thecc.02G012700 Theobroma cacao HOM05D000421 ORTHO05D001007 3.8e-06 56.2 73 42.5
unitig_747.g21278 Utricularia gibba HOM05D000421 ORTHO05D001007 3.8e-06 56.2 37 62.2
CSS0000418 Camellia sinensis var. sinensis HOM05D000421 ORTHO05D001007 5.0e-06 55.8 36 66.7
FvH4_6g00630 Fragaria vesca HOM05D000421 ORTHO05D001007 5.0e-06 55.8 79 40.5
Rhsim09G0129500 Rhododendron simsii HOM05D000421 ORTHO05D001007 5.0e-06 55.8 76 42.1
THA.LOC104809032 Tarenaya hassleriana HOM05D000421 ORTHO05D001007 5.0e-06 55.8 72 41.7
VMungo0540G2356 Vigna mungo HOM05D000421 ORTHO05D001007 5.0e-06 55.8 35 65.7
FAN04G1644 Fragaria x ananassa HOM05D000421 ORTHO05D001007 6.6e-06 55.5 73 39.7
Glyma.20G219300 Glycine max HOM05D000421 ORTHO05D001007 6.6e-06 55.5 33 72.7
Lalb_Chr06g0168461 Lupinus albus HOM05D000421 ORTHO05D001007 6.6e-06 55.5 34 67.6
Os01g0919600 Oryza sativa ssp. japonica HOM05D000421 ORTHO05D001007 6.6e-06 55.5 55 50.9
Aa31LG9G7100 Aethionema arabicum HOM05D000421 ORTHO05D001007 8.6e-06 55.1 75 42.7
AL9U11670 Arabidopsis lyrata HOM05D000421 ORTHO05D001007 8.6e-06 55.1 50 52.0
Medtr1g078290 Medicago truncatula HOM05D000421 ORTHO05D001007 8.6e-06 55.1 69 47.8
Medtr2g005330 Medicago truncatula HOM05D000421 ORTHO05D001007 8.6e-06 55.1 35 65.7
RcHm_v2.0_Chr3g0447981 Rosa chinensis HOM05D000421 ORTHO05D001007 8.6e-06 55.1 85 35.3
Sed0019197 Sechium edule HOM05D000421 ORTHO05D001007 8.6e-06 55.1 31 77.4


User provided reference genes

Program Settings