Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold109G31056 Striga asiatica HOM05D005333 ORTHO05D005776 1.1e-72 276.6 136 100.0
SGA_v2.0_scaffold49G18402 Striga asiatica HOM05D005333 ORTHO05D005776 6.0e-52 207.6 110 94.5
SGA_v2.0_scaffold3596G54365 Striga asiatica HOM05D005333 ORTHO05D005776 5.8e-47 191.0 100 94.0
Migut.H01282 Erythranthe guttata HOM05D005333 ORTHO05D005776 1.3e-38 163.3 100 78.0
MSTRG.12252 Avicennia marina HOM05D005333 ORTHO05D005776 1.7e-38 162.9 103 75.7
Oeu044201.1 Olea europaea HOM05D005333 ORTHO05D005776 2.8e-33 145.6 105 67.6
CANSAT11G0814 Cannabis sativa HOM05D005333 ORTHO05D005776 8.4e-30 134.0 102 65.7
Nitab4.5_0006661g0010 Nicotiana tabacum HOM05D005333 ORTHO05D005776 1.2e-28 130.2 107 65.4
Cc06_g08400 Coffea canephora HOM05D005333 ORTHO05D005776 2.1e-28 129.4 105 63.8
Nitab4.5_0000028g0370 Nicotiana tabacum HOM05D005333 ORTHO05D005776 2.1e-28 129.4 107 64.5
Peaxi162Scf00046g00622 Petunia axillaris HOM05D005333 ORTHO05D005776 2.3e-27 125.9 105 61.0
Dinv36517 Davidia involucrata HOM05D005333 ORTHO05D005776 5.1e-27 124.8 105 61.0
unitig_748.g8609 Utricularia gibba HOM05D005333 ORTHO05D005776 1.5e-26 123.2 129 49.6
Hma1.2p1_0018F.1_g012330 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 4.3e-26 121.7 103 58.3
vmacro20565 Vaccinium macrocarpon HOM05D005333 ORTHO05D005776 1.3e-25 120.2 105 61.9
CiPaw.03G244900 Carya illinoinensis HOM05D005333 ORTHO05D005776 3.7e-25 118.6 102 57.8
Solyc07g008270.3 Solanum lycopersicum HOM05D005333 ORTHO05D005776 4.8e-25 118.2 98 62.2
Sopen07g004160 Solanum pennellii HOM05D005333 ORTHO05D005776 4.8e-25 118.2 98 62.2
AL6G31740 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 6.3e-25 117.9 104 56.7
RcHm_v2.0_Chr2g0088271 Rosa chinensis HOM05D005333 ORTHO05D005776 8.2e-25 117.5 104 57.7
PGSC0003DMG400019893 Solanum tuberosum HOM05D005333 ORTHO05D005776 1.1e-24 117.1 98 61.2
TWI34G1084 Tripterygium wilfordii HOM05D005333 ORTHO05D005776 1.4e-24 116.7 102 58.8
DCAR_014887 Daucus carota HOM05D005333 ORTHO05D005776 2.4e-24 115.9 104 61.5
Cfa003386 Carpinus fangiana HOM05D005333 ORTHO05D005776 3.1e-24 115.5 104 57.7
DCAR_020918 Daucus carota HOM05D005333 ORTHO05D005776 3.1e-24 115.5 105 59.0
THA.LOC104799642 Tarenaya hassleriana HOM05D005333 ORTHO05D005776 3.1e-24 115.5 103 54.4
Prupe.7G066500 Prunus persica HOM05D005333 ORTHO05D005776 1.2e-23 113.6 106 54.7
FvH4_1g03150 Fragaria vesca HOM05D005333 ORTHO05D005776 1.5e-23 113.2 103 60.2
FAN19G1630 Fragaria x ananassa HOM05D005333 ORTHO05D005776 1.5e-23 113.2 103 60.2
Prupe.7G244000 Prunus persica HOM05D005333 ORTHO05D005776 2.0e-23 112.8 106 54.7
Carub.0006s1858 Capsella rubella HOM05D005333 ORTHO05D005776 2.6e-23 112.5 104 52.9
FAN26G1318 Fragaria x ananassa HOM05D005333 ORTHO05D005776 2.6e-23 112.5 102 59.8
AT5G20180 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 3.4e-23 112.1 105 57.1
GSVIVG01015545001 Vitis vinifera HOM05D005333 ORTHO05D005776 3.4e-23 112.1 100 59.0
Actinidia40477 Actinidia chinensis HOM05D001011 ORTHO05D000851 5.9e-23 111.3 81 67.9
Gohir.A06G055500 Gossypium hirsutum HOM05D005333 ORTHO05D005776 5.9e-23 111.3 104 55.8
Gorai.010G063500 Gossypium raimondii HOM05D005333 ORTHO05D005776 5.9e-23 111.3 104 55.8
Rhsim03G0248400 Rhododendron simsii HOM05D005333 ORTHO05D005776 5.9e-23 111.3 108 59.3
Ciclev10010005m.g Citrus clementina HOM05D005333 ORTHO05D005776 7.6e-23 110.9 102 53.9
Dinv41504 Davidia involucrata HOM05D005333 ORTHO05D005776 7.6e-23 110.9 88 63.6
Duzib187G1708 Durio zibethinus HOM05D005333 ORTHO05D005776 1.0e-22 110.5 104 53.8
Thhalv10015097m.g Eutrema salsugineum HOM05D005333 ORTHO05D005776 1.0e-22 110.5 104 51.9
Thecc.09G127500 Theobroma cacao HOM05D005333 ORTHO05D005776 1.7e-22 109.8 102 54.9
Atru.chr1.953 Acer truncatum HOM05D005333 ORTHO05D005776 2.9e-22 109.0 100 55.0
Haze_25566 Corylus avellana HOM05D005333 ORTHO05D005776 3.8e-22 108.6 94 57.4
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 3.8e-22 108.6 102 57.8
Gohir.D06G054400 Gossypium hirsutum HOM05D005333 ORTHO05D005776 3.8e-22 108.6 104 54.8
MBI01_g45309_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 3.8e-22 108.6 76 69.7
BolC3t13621H Brassica oleracea HOM05D005333 ORTHO05D005776 6.5e-22 107.8 104 51.9
BraA03t10304Z Brassica rapa HOM05D005333 ORTHO05D005776 6.5e-22 107.8 104 51.9
Sp6g24220 Schrenkiella parvula HOM05D005333 ORTHO05D005776 6.5e-22 107.8 104 51.0
Nn2g12046 Nelumbo nucifera HOM05D005333 ORTHO05D005776 8.5e-22 107.5 103 54.4
MBI01_g15682_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 1.9e-21 106.3 76 68.4
C03p11490 Brassica napus HOM05D005333 ORTHO05D005776 4.2e-21 105.1 104 51.0
Cpa.g.sc46.7 Carica papaya HOM05D005333 ORTHO05D005776 4.2e-21 105.1 100 57.0
Lalb_Chr12g0197971 Lupinus albus HOM05D005333 ORTHO05D005776 4.2e-21 105.1 97 56.7
FAN23G1698 Fragaria x ananassa HOM05D005333 ORTHO05D005776 5.5e-21 104.8 126 50.8
QL02p088661 Quercus lobata HOM05D005333 ORTHO05D005776 5.5e-21 104.8 100 55.0
Hma1.2p1_0931F.1_g238060 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 7.2e-21 104.4 75 68.0
Duzib168G0900 Durio zibethinus HOM05D005333 ORTHO05D005776 9.4e-21 104.0 120 49.2
A03p09910 Brassica napus HOM05D005333 ORTHO05D005776 1.2e-20 103.6 104 51.0
CsaV3_1G030220 Cucumis sativus L. HOM05D005333 ORTHO05D005776 1.6e-20 103.2 101 55.4
Sed0012264 Sechium edule HOM05D005333 ORTHO05D005776 1.6e-20 103.2 97 58.8
ClCG06G011210 Citrullus lanatus HOM05D005333 ORTHO05D005776 2.1e-20 102.8 100 54.0
arahy.Tifrunner.gnm1.ann1.83L7WY Arachis hypogaea HOM05D005333 ORTHO05D005776 2.7e-20 102.4 97 56.7
arahy.Tifrunner.gnm1.ann1.U3NP9C Arachis hypogaea HOM05D005333 ORTHO05D005776 4.6e-20 101.7 97 55.7
Eucgr.C01530 Eucalyptus grandis HOM05D005333 ORTHO05D005776 4.6e-20 101.7 98 53.1
Manes.14G133000 Manihot esculenta HOM05D005333 ORTHO05D005776 4.6e-20 101.7 100 55.0
Potri.018G131000 Populus trichocarpa HOM05D005333 ORTHO05D005776 4.6e-20 101.7 102 54.9
Aqoxy7G03689 Aquilegia oxysepala HOM05D005333 ORTHO05D005776 6.1e-20 101.3 98 53.1
CARHR192640 Cardamine hirsuta HOM05D005333 ORTHO05D005776 6.1e-20 101.3 106 53.8
Lj4g0022056 Lotus japonicus HOM05D005333 ORTHO05D005776 7.9e-20 100.9 100 54.0
MD15G1172100 Malus domestica HOM05D005333 ORTHO05D005776 1.4e-19 100.1 102 52.9
MELO3C010337.2 Cucumis melo HOM05D005333 ORTHO05D005776 5.1e-19 98.2 82 62.2
Glyma.17G114100 Glycine max HOM05D005333 ORTHO05D005776 5.1e-19 98.2 115 47.8
Lj4g0001981 Lotus japonicus HOM05D005333 ORTHO05D005776 5.1e-19 98.2 100 54.0
Medtr4g114610 Medicago truncatula HOM05D005333 ORTHO05D005776 5.1e-19 98.2 104 52.9
Hund09250 Selenicereus undatus HOM05D005333 ORTHO05D005776 5.1e-19 98.2 100 55.0
Rhsim01G0068900 Rhododendron simsii HOM05D005333 ORTHO05D005776 1.1e-18 97.1 104 54.8
TPR.G26498 Trifolium pratense HOM05D005333 ORTHO05D005776 1.1e-18 97.1 104 50.0
CDE10G0227 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 1.5e-18 96.7 82 59.8
MD02G1030500 Malus domestica HOM05D005333 ORTHO05D005776 1.5e-18 96.7 100 53.0
Eucgr.C01196 Eucalyptus grandis HOM05D005333 ORTHO05D005776 1.9e-18 96.3 100 52.0
Psat4g038680 Pisum sativum HOM05D005333 ORTHO05D005776 2.5e-18 95.9 104 51.0
SalBow6G5031 Salvia bowleyana HOM05D005333 ORTHO05D005776 2.5e-18 95.9 51 86.3
Nn2g12039 Nelumbo nucifera HOM05D005333 ORTHO05D005776 4.3e-18 95.1 53 83.0
PGR102G2059 Punica granatum HOM05D005333 ORTHO05D005776 5.7e-18 94.7 104 48.1
Sc08g0006540 Simmondsia chinensis HOM05D005333 ORTHO05D005776 5.7e-18 94.7 101 53.5
CDE04G2910 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 9.7e-18 94.0 81 55.6
Glyma.13G166400 Glycine max HOM05D005333 ORTHO05D005776 9.7e-18 94.0 97 51.5
Potri.006G069000 Populus trichocarpa HOM05D005333 ORTHO05D005776 9.7e-18 94.0 102 51.0
Aa31LG1G14430 Aethionema arabicum HOM05D005333 ORTHO05D005776 1.3e-17 93.6 50 84.0
EL10Ac8g18671 Beta vulgaris HOM05D005333 ORTHO05D005776 1.3e-17 93.6 105 47.6
ECA246G0448 Erigeron canadensis HOM05D005333 ORTHO05D005776 1.7e-17 93.2 105 52.4
Lalb_Chr07g0179001 Lupinus albus HOM05D005333 ORTHO05D005776 2.2e-17 92.8 80 61.2
COL.COLO4_35113 Corchorus olitorius HOM05D005333 ORTHO05D005776 2.8e-17 92.4 50 82.0
VMungo1215G0455 Vigna mungo HOM05D005333 ORTHO05D005776 4.8e-17 91.7 97 47.4
Phvul.003G165300 Phaseolus vulgaris HOM05D005333 ORTHO05D005776 8.2e-17 90.9 93 50.5
CDE10G0631 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 1.1e-16 90.5 81 59.3
Lsat_1_v5_gn_5_31321 Lactuca sativa HOM05D005333 ORTHO05D005776 1.4e-16 90.1 104 53.8
BcaC03g13741 Brassica carinata HOM05D005333 ORTHO05D005776 4.1e-16 88.6 104 43.3
BolC2t07023H Brassica oleracea HOM05D005333 ORTHO05D005776 4.1e-16 88.6 104 43.3
BraA02t05559Z Brassica rapa HOM05D005333 ORTHO05D005776 4.1e-16 88.6 104 43.3
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 5.3e-16 88.2 62 67.7
AUR62013349 Chenopodium quinoa HOM05D005333 ORTHO05D005776 6.9e-16 87.8 78 57.7
BcaB05g22866 Brassica carinata HOM05D005333 ORTHO05D005776 2.0e-15 86.3 102 42.2
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 4.5e-15 85.1 106 45.3
Ciclev10010320m.g Citrus clementina HOM05D005333 ORTHO05D005776 4.5e-15 85.1 102 43.1
AUR62011139 Chenopodium quinoa HOM05D005333 ORTHO05D005776 7.7e-15 84.3 78 56.4
A02p06080 Brassica napus HOM05D005333 ORTHO05D005776 1.0e-14 84.0 104 41.3
BNapus_Darmor_BZH_scaffold_38p01760 Brassica napus HOM05D005333 ORTHO05D005776 1.3e-14 83.6 105 41.9
HanXRQChr06g0182851 Helianthus annuus HOM05D005333 ORTHO05D005776 2.9e-14 82.4 97 49.5
Pp3c15_5230 Physcomitrium patens HOM05D005333 ORTHO05D005776 4.7e-12 75.1 53 60.4
AagrBONN_evm.TU.Sc2ySwM_344.103 Anthoceros agrestis HOM05D005333 ORTHO05D005776 1.8e-11 73.2 59 61.0
Mapoly0008s0076 Marchantia polymorpha HOM05D005333 ORTHO05D005776 2.3e-11 72.8 61 52.5
AagrBONN_evm.TU.Sc2ySwM_344.112 Anthoceros agrestis HOM05D005333 ORTHO05D005776 3.9e-11 72.0 43 76.7
AL5G13030 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 8.8e-11 70.9 53 62.3
Zm00001eb103590 Zea mays HOM05D001170 ORTHO05D006602 2.0e-10 69.7 87 44.8
PRCOL_00005826 Prasinoderma coloniale HOM05D005333 ORTHO05D005776 5.7e-10 68.2 100 35.0
CBR_g19308 Chara braunii HOM05D005333 ORTHO05D005776 9.7e-10 67.4 41 73.2
Zm00001eb212180 Zea mays HOM05D005333 ORTHO05D005776 9.7e-10 67.4 43 69.8
Actinidia21980 Actinidia chinensis HOM05D001011 ORTHO05D005776 3.7e-09 65.5 74 48.6
Os03g0811800 Oryza sativa ssp. japonica HOM05D005333 ORTHO05D005776 8.2e-09 64.3 43 65.1
ATR0618G145 Amborella trichopoda HOM05D005333 ORTHO05D005776 2.4e-08 62.8 53 54.7
SMO116G0310 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 4.1e-08 62.0 43 65.1
Sabra18G0111200 Salix brachista HOM05D002758 ORTHO05D005776 1.2e-07 60.5 108 38.0
Zm00001eb091680 Zea mays HOM05D001170 ORTHO05D006602 1.2e-07 60.5 90 42.2
Zm00001eb091690 Zea mays HOM05D001170 ORTHO05D006602 1.2e-07 60.5 90 42.2
SMO197G0073 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 3.4e-07 58.9 43 60.5
SGA_v2.0_scaffold80G25793 Striga asiatica HOM05D005333 ORTHO05D005776 5.9e-07 58.2 70 52.9
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 7.7e-07 57.8 66 51.5
ATCG00760 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 1.3e-06 57.0 38 63.2
BolC7t41709H Brassica oleracea HOM05D005333 ORTHO05D005776 1.3e-06 57.0 38 63.2
BolSC29t60528H Brassica oleracea HOM05D005333 ORTHO05D005776 1.3e-06 57.0 38 63.2
BolSC29t60609H Brassica oleracea HOM05D005333 ORTHO05D005776 1.3e-06 57.0 38 63.2
BolSC35t60669H Brassica oleracea HOM05D005333 ORTHO05D005776 1.3e-06 57.0 38 63.2
BolSC35t60730H Brassica oleracea HOM05D005333 ORTHO05D005776 1.3e-06 57.0 38 63.2
BraA06t25383Z Brassica rapa HOM05D005333 ORTHO05D005776 1.3e-06 57.0 38 63.2
BraSC103t45446Z Brassica rapa HOM05D005333 ORTHO05D005776 1.3e-06 57.0 38 63.2
BraSC138t45554Z Brassica rapa HOM05D005333 ORTHO05D005776 1.3e-06 57.0 38 63.2
BraSC143t45636Z Brassica rapa HOM05D005333 ORTHO05D005776 1.3e-06 57.0 38 63.2
BraSC58t46440Z Brassica rapa HOM05D005333 ORTHO05D005776 1.3e-06 57.0 38 63.2
BraSC58t46501Z Brassica rapa HOM05D005333 ORTHO05D005776 1.3e-06 57.0 38 63.2
BraSC59t46571Z Brassica rapa HOM05D005333 ORTHO05D005776 1.3e-06 57.0 38 63.2
DCAR_032519 Daucus carota HOM05D005333 ORTHO05D005776 1.3e-06 57.0 38 63.2
PSO548G0025 Papaver somniferum HOM05D005333 ORTHO05D005776 1.3e-06 57.0 38 63.2
PGR111G0044 Punica granatum HOM05D005333 ORTHO05D005776 1.3e-06 57.0 38 63.2
CARHR282240 Cardamine hirsuta HOM05D000964 ORTHO05D003870 2.2e-06 56.2 39 61.5
COL.COLO4_00391 Corchorus olitorius HOM05D006856 ORTHO05D008513 2.2e-06 56.2 43 55.8
Gorai.009G350300 Gossypium raimondii HOM05D005333 ORTHO05D005776 2.9e-06 55.8 38 63.2
Gohir.A09G245566 Gossypium hirsutum HOM05D019283 ORTHO05D005776 5.0e-06 55.1 46 54.3
Solyc12g035850.1 Solanum lycopersicum HOM05D000216 ORTHO05D004083 6.5e-06 54.7 38 63.2
Zm00001eb354800 Zea mays HOM05D002511 ORTHO05D005776 8.5e-06 54.3 67 43.3


User provided reference genes

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