Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 0.0e+00 2788.8 1405 100.0
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 0.0e+00 1908.6 1392 72.5
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 0.0e+00 1875.9 1392 71.4
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 0.0e+00 1731.5 1395 66.0
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1722.6 1396 65.5
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1718.4 1430 64.6
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 0.0e+00 1713.4 1416 65.1
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 0.0e+00 1704.5 1437 64.2
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 0.0e+00 1679.1 1419 63.9
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1662.5 1398 63.3
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 0.0e+00 1659.8 1402 63.1
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 0.0e+00 1659.4 1401 63.7
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 0.0e+00 1656.0 1394 62.4
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 0.0e+00 1654.8 1398 63.2
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1653.3 1405 63.3
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 0.0e+00 1650.6 1404 63.2
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 0.0e+00 1647.9 1397 63.1
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1641.7 1405 62.8
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 0.0e+00 1635.5 1411 62.1
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 0.0e+00 1634.8 1398 62.0
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 0.0e+00 1634.0 1398 62.2
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 0.0e+00 1632.5 1400 62.9
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 0.0e+00 1628.2 1407 62.2
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1617.4 1399 62.5
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1613.2 1396 61.4
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1612.8 1399 62.3
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 0.0e+00 1612.8 1403 61.6
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1612.4 1397 61.3
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1611.3 1397 61.3
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1608.6 1397 61.1
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 0.0e+00 1602.8 1403 61.2
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1601.6 1403 61.2
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1601.6 1402 60.3
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 0.0e+00 1598.6 1354 62.9
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1593.9 1434 60.1
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 0.0e+00 1592.0 1403 60.4
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1590.5 1426 60.3
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1585.9 1399 61.0
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 0.0e+00 1585.5 1389 62.1
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1584.3 1395 59.9
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 0.0e+00 1584.3 1401 61.3
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 0.0e+00 1583.2 1413 60.6
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 0.0e+00 1582.8 1410 60.4
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 0.0e+00 1582.8 1403 61.4
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 0.0e+00 1572.4 1411 60.7
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1565.8 1402 60.0
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 0.0e+00 1564.3 1614 54.4
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1562.7 1398 59.9
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1561.2 1402 60.1
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1555.0 1399 60.4
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1552.3 1411 59.6
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1550.4 1412 59.8
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 0.0e+00 1550.0 1399 59.7
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1547.7 1402 60.0
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1545.8 1399 59.8
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1537.3 1403 59.4
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1535.0 1400 59.3
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 0.0e+00 1531.9 1410 58.9
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1526.5 1401 58.0
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1526.5 1404 57.3
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1523.8 1402 57.8
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1523.5 1436 58.0
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 0.0e+00 1523.1 1391 59.9
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1522.7 1395 59.4
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1522.3 1387 60.1
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1513.0 1399 58.6
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 0.0e+00 1510.4 1411 58.3
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1510.0 1395 57.9
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1508.4 1400 58.4
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1508.4 1398 58.1
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1508.4 1416 58.5
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1505.0 1415 58.4
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1503.8 1399 58.5
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1501.1 1396 57.7
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1496.1 1401 58.0
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1493.4 1417 57.0
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 0.0e+00 1488.8 1410 57.9
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1487.6 1414 57.1
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1479.9 1390 56.8
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1474.5 1380 58.3
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1461.0 1428 56.4
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 0.0e+00 1458.0 1419 57.4
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 0.0e+00 1455.3 1399 58.0
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1440.2 1410 57.0
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1438.7 1397 55.7
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 0.0e+00 1431.0 1393 55.1
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1421.8 1091 67.8
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1417.9 1326 59.2
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 0.0e+00 1391.3 1302 57.7
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 0.0e+00 1375.1 1407 54.8
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1367.4 1383 54.1
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 0.0e+00 1359.7 1419 53.1
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1358.6 1387 54.1
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1353.2 1388 53.9
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1337.8 1402 53.6
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 0.0e+00 1313.5 1400 52.9
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 0.0e+00 1308.1 1304 57.8
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1285.8 1383 51.6
Sabra18G0109200 Salix brachista HOM05D004002 ORTHO05D004668 0.0e+00 1283.1 1185 60.1
Ca_06931_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1281.9 1151 61.9
Sed0028143 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1275.4 1161 60.8
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1261.5 1386 51.4
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1256.9 1387 51.3
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1256.9 1387 51.3
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1253.0 1386 51.2
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1248.0 1387 50.5
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1247.6 1385 51.2
Dinv41488 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1246.9 1077 63.7
Migut.K00437 Erythranthe guttata HOM05D004002 ORTHO05D004668 0.0e+00 1206.8 794 77.5
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 0.0e+00 1186.8 1417 48.8
Peaxi162Scf00891g00220 Petunia axillaris HOM05D004002 ORTHO05D004668 0.0e+00 1180.6 1143 58.7
Lj7C426G10 Lonicera japonica HOM05D004002 ORTHO05D004668 0.0e+00 1145.6 1147 57.8
ECA240G2868 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1144.0 978 63.4
VMungo1215G3423 Vigna mungo HOM05D004002 ORTHO05D004668 0.0e+00 1120.1 994 62.1
Phvul.003G167101 Phaseolus vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1117.1 995 62.5
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 6.2e-309 1064.7 1502 44.3
Psat4g037880 Pisum sativum HOM05D004002 ORTHO05D004668 3.2e-305 1052.4 871 63.8
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 6.6e-287 991.5 1415 42.7
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 6.9e-284 981.5 1434 42.5
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 7.3e-278 961.4 1461 42.0
Os02g0137000 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 4.9e-266 922.2 900 57.4
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 5.1e-247 859.0 772 61.7
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 5.1e-247 859.0 1211 43.8
AagrBONN_evm.TU.Sc2ySwM_368.2316 Anthoceros agrestis HOM05D004002 ORTHO05D004668 6.5e-242 842.0 1205 44.9
CARHR153610 Cardamine hirsuta HOM05D004002 ORTHO05D004668 8.8e-223 778.5 751 57.3
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 8.0e-208 728.8 1432 37.0
Haze_25541 Corylus avellana HOM05D004002 ORTHO05D004668 1.3e-205 721.5 1028 45.9
Haze_25542 Corylus avellana HOM05D004002 ORTHO05D004668 1.5e-182 644.8 578 59.0
Migut.K00436 Erythranthe guttata HOM05D004002 ORTHO05D004668 1.6e-179 634.8 520 67.9
SHI03370 Sapria himalayana HOM05D004002 ORTHO05D000023 2.1e-176 624.4 588 57.0
CsaV3_UNG026150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 1.3e-162 578.6 672 50.7
Oeu040328.1 Olea europaea HOM05D004002 ORTHO05D004668 1.8e-154 551.6 397 71.3
CsaV3_UNG023150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 2.1e-152 544.7 707 48.9
Haze_25536 Corylus avellana HOM05D004002 ORTHO05D004668 4.0e-151 540.4 523 58.3
Psat4g037920 Pisum sativum HOM05D004002 ORTHO05D004668 5.5e-148 530.0 527 56.9
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 2.0e-134 485.0 417 62.4
VMungo1215G0854 Vigna mungo HOM05D004002 ORTHO05D004668 3.6e-115 421.0 358 57.8
ECA240G1422 Erigeron canadensis HOM05D004002 ORTHO05D004668 8.2e-104 383.3 326 58.9
Solyc07g008090.4 Solanum lycopersicum HOM05D004002 ORTHO05D004668 1.8e-103 382.1 271 68.6
Lj7A426T59 Lonicera japonica HOM05D004002 ORTHO05D004668 2.0e-97 362.1 238 68.5
Solyc07g008075.1 Solanum lycopersicum HOM05D004002 ORTHO05D004668 2.1e-91 342.0 222 79.7
Ca_06930_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 4.5e-86 324.3 241 63.9
Hund09270 Selenicereus undatus HOM05D004002 ORTHO05D004668 4.3e-84 317.8 362 52.5
Haze_13487 Corylus avellana HOM05D004002 ORTHO05D004668 1.6e-83 315.8 238 62.6
Sabra18G0109300 Salix brachista HOM05D004002 ORTHO05D004668 6.1e-83 313.9 252 60.7
Aqoxy7G02287 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 9.8e-81 306.6 341 44.9
SHI03372 Sapria himalayana HOM05D004002 ORTHO05D004668 1.1e-74 286.6 245 56.3
SHI03368 Sapria himalayana HOM05D004002 ORTHO05D004668 3.6e-59 235.0 218 61.0
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 6.2e-59 234.2 267 52.1
SEGI_36835 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 1.1e-58 233.4 237 48.1
Os02g0136933 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 1.5e-52 213.0 240 45.4
Haze_18451 Corylus avellana HOM05D004002 ORTHO05D004668 4.3e-44 184.9 134 63.4
Dinv41489 Davidia involucrata HOM05D004002 ORTHO05D004668 2.8e-43 182.2 166 54.8
Oeu040327.1 Olea europaea HOM05D004002 ORTHO05D004668 5.3e-42 177.9 117 74.4
BcaB07g33170 Brassica carinata HOM05D004002 ORTHO05D002109 7.9e-38 164.1 232 45.7
SHI03369 Sapria himalayana HOM05D004002 ORTHO05D004668 7.4e-28 131.0 131 57.3
Lsat_1_v5_gn_0_43201 Lactuca sativa HOM05D004002 ORTHO05D004668 8.4e-24 117.5 218 39.0
Medtr8g073750 Medicago truncatula HOM05D004002 ORTHO05D004668 3.0e-21 109.0 129 48.8
ECA240G3712 Erigeron canadensis HOM05D004002 ORTHO05D004668 4.3e-20 105.1 86 60.5
Lsat_1_v5_gn_8_63461 Lactuca sativa HOM05D004002 ORTHO05D004668 5.7e-20 104.8 316 31.3
Hund09269 Selenicereus undatus HOM05D004002 ORTHO05D004668 9.7e-20 104.0 86 62.8
C09p47760 Brassica napus HOM05D004002 ORTHO05D004668 3.1e-18 99.0 60 75.0
Sp1g38940 Schrenkiella parvula HOM05D004002 ORTHO05D004668 5.3e-18 98.2 92 56.5
C04p60270 Brassica napus HOM05D004002 ORTHO05D004668 1.2e-17 97.1 60 73.3
BolC8t50699H Brassica oleracea HOM05D004002 ORTHO05D004668 1.2e-17 97.1 60 73.3
BolC6t36594H Brassica oleracea HOM05D004002 ORTHO05D004668 5.9e-17 94.7 60 71.7
C06p14160 Brassica napus HOM05D004002 ORTHO05D004668 1.0e-16 94.0 58 72.4
QL02p089531 Quercus lobata HOM05D004002 ORTHO05D004668 2.9e-16 92.4 71 66.2
TPR.G35745 Trifolium pratense HOM05D004002 ORTHO05D004668 2.5e-15 89.4 135 43.0
Cre10.g449950 Chlamydomonas reinhardtii HOM05D004002 ORTHO05D004668 1.8e-10 73.2 209 33.5
PSO541G4337 Papaver somniferum HOM05D004002 ORTHO05D004668 5.9e-09 68.2 75 49.3
Aqoxy7G02056 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 1.6e-06 60.1 89 43.8
HanXRQChr14g0456471 Helianthus annuus HOM05D000103 ORTHO05D000001 1.6e-06 60.1 97 41.2
HanXRQChr03g0064791 Helianthus annuus HOM05D004002 ORTHO05D004668 6.1e-06 58.2 48 58.3


User provided reference genes

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