Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 1.4e-207 726.1 377 100.0
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 9.0e-114 414.5 390 58.7
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 6.2e-107 391.7 386 54.9
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 3.5e-102 375.9 393 53.9
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 1.5e-92 344.0 381 51.2
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 4.3e-92 342.4 364 51.1
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 5.7e-92 342.0 346 52.9
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 7.4e-92 341.7 321 54.8
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 9.6e-92 341.3 343 52.5
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 1.1e-90 337.8 349 51.6
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 1.4e-90 337.4 361 50.1
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 1.8e-90 337.0 371 49.1
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 1.8e-90 337.0 376 50.0
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 3.1e-90 336.3 346 50.9
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 3.1e-90 336.3 371 49.1
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 5.3e-90 335.5 343 51.3
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 2.6e-89 333.2 381 49.9
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 1.0e-88 331.3 300 56.7
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 1.7e-88 330.5 293 57.0
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 2.9e-88 329.7 346 50.6
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 8.5e-88 328.2 291 58.1
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 1.4e-87 327.4 293 55.6
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 3.2e-87 326.2 346 50.6
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 5.5e-87 325.5 344 52.3
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 5.5e-87 325.5 361 51.5
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 9.3e-87 324.7 368 49.2
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 1.6e-86 323.9 345 51.3
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 4.6e-86 322.4 296 56.4
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 4.6e-86 322.4 297 56.9
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.0e-85 321.2 340 52.9
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 1.3e-85 320.9 344 52.0
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 2.3e-85 320.1 344 51.7
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 3.0e-85 319.7 298 53.7
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 3.9e-85 319.3 345 49.3
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 3.9e-85 319.3 344 51.7
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 1.9e-84 317.0 345 48.7
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 4.3e-84 315.8 343 50.4
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 5.7e-84 315.5 365 45.8
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 7.4e-84 315.1 361 48.8
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 2.8e-83 313.2 353 47.6
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 3.7e-83 312.8 286 55.2
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 1.4e-82 310.8 324 52.8
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 1.4e-82 310.8 297 52.5
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 3.1e-82 309.7 350 48.9
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 3.1e-82 309.7 349 51.0
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 5.3e-82 308.9 362 47.2
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 1.2e-81 307.8 332 50.3
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 2.0e-81 307.0 306 52.9
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 2.6e-81 306.6 358 45.3
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 2.6e-81 306.6 358 45.3
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 7.7e-81 305.1 296 55.7
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 1.3e-80 304.3 336 51.8
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 1.3e-80 304.3 353 47.3
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 1.7e-80 303.9 319 49.2
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 1.7e-80 303.9 306 49.0
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 1.7e-80 303.9 308 52.6
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 1.7e-80 303.9 297 50.5
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 2.2e-80 303.5 310 48.7
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 2.2e-80 303.5 378 44.7
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 3.8e-80 302.8 294 54.8
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 3.8e-80 302.8 294 54.8
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 3.8e-80 302.8 275 55.6
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 6.5e-80 302.0 294 50.0
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 1.1e-79 301.2 348 46.0
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 1.4e-79 300.8 368 44.3
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 1.9e-79 300.4 303 49.5
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 1.9e-79 300.4 370 47.0
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 3.2e-79 299.7 308 51.9
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 3.2e-79 299.7 345 49.9
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 4.2e-79 299.3 285 53.3
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 4.2e-79 299.3 346 48.8
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 5.5e-79 298.9 398 41.7
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 1.2e-78 297.7 297 49.5
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 7.9e-78 295.0 306 52.3
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 1.0e-77 294.7 296 50.3
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 1.0e-77 294.7 362 43.4
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 1.0e-77 294.7 323 47.7
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 1.4e-77 294.3 346 45.7
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 6.7e-77 292.0 340 46.8
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 1.5e-76 290.8 286 52.8
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 1.5e-76 290.8 286 52.8
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 1.3e-75 287.7 283 50.5
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 4.1e-74 282.7 297 48.8
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 4.1e-74 282.7 294 50.7
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 3.4e-73 279.6 323 47.1
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 9.4e-71 271.6 323 45.8
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 7.9e-70 268.5 332 44.9
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 3.3e-68 263.1 281 46.6
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 1.7e-67 260.8 265 49.1
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 2.8e-67 260.0 237 57.8
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 4.8e-67 259.2 259 49.0
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 1.1e-66 258.1 386 45.1
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 7.2e-63 245.4 379 41.4
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 1.2e-62 244.6 247 53.8
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 4.7e-62 242.7 237 51.5
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 8.0e-62 241.9 307 39.4
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 4.8e-59 232.6 295 42.0
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 2.4e-58 230.3 297 42.4
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 2.7e-57 226.9 375 35.5
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 1.2e-54 218.0 296 40.5
SGA_v2.0_scaffold132G34545 Striga asiatica HOM05D005912 ORTHO05D007329 1.5e-52 211.1 252 52.0
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 6.3e-51 205.7 293 39.6
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 3.8e-48 196.4 216 48.1
Peaxi162Scf00300g00017 Petunia axillaris HOM05D005912 ORTHO05D007329 2.4e-42 177.2 223 47.5
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 1.3e-40 171.4 116 66.4
DCAR_011589 Daucus carota HOM05D005912 ORTHO05D007329 2.3e-40 170.6 255 43.1
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 2.3e-40 170.6 366 33.3
BolC3t20343H Brassica oleracea HOM05D000088 ORTHO05D000933 2.9e-40 170.2 295 36.6
C03p80880 Brassica napus HOM05D000088 ORTHO05D000933 8.6e-40 168.7 295 36.9
A08p21710 Brassica napus HOM05D000088 ORTHO05D000933 1.1e-39 168.3 296 36.8
BcaC01g00519 Brassica carinata HOM05D005912 ORTHO05D007329 7.3e-39 165.6 211 43.1
VMungo1215G0927 Vigna mungo HOM05D005912 ORTHO05D007329 2.8e-38 163.7 168 50.6
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 2.3e-37 160.6 133 58.6
BcaNung05729 Brassica carinata HOM05D005912 ORTHO05D007329 3.0e-37 160.2 182 45.6
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 1.5e-36 157.9 140 53.6
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 2.7e-33 147.1 295 34.6
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 5.9e-33 146.0 284 36.3
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 1.8e-29 134.4 168 41.7
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 2.4e-26 124.0 136 42.6
Lj2A933T26 Lonicera japonica HOM05D005912 ORTHO05D007329 3.3e-23 113.6 116 56.9
AagrBONN_evm.TU.Sc2ySwM_340.180 Anthoceros agrestis HOM05D005912 ORTHO05D007329 2.6e-20 104.0 166 35.5
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 1.2e-17 95.1 112 42.9
AagrBONN_evm.TU.Sc2ySwM_228.1421 Anthoceros agrestis HOM05D005912 ORTHO05D007329 2.7e-17 94.0 214 29.9
arahy.Tifrunner.gnm1.ann1.SP2XL4 Arachis hypogaea HOM05D005912 ORTHO05D007329 1.0e-16 92.0 99 48.5
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 3.0e-16 90.5 71 54.9
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 3.0e-16 90.5 70 55.7
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 5.1e-16 89.7 67 58.2
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 3.3e-15 87.0 62 61.3
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 6.2e-14 82.8 52 63.5
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 2.3e-13 80.9 70 52.9
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 7.6e-12 75.9 112 36.6
unitig_88.g27770 Utricularia gibba HOM05D005912 ORTHO05D007329 1.6e-09 68.2 104 38.5
Hma1.2p1_4017F.1_g338140 Hydrangea macrophylla HOM05D005912 ORTHO05D007329 1.1e-07 62.0 56 48.2


User provided reference genes

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