Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold108G30989 Striga asiatica HOM05D004144 ORTHO05D004902 3.2e-192 674.9 330 100.0
SGA_v2.0_scaffold2G00964 Striga asiatica HOM05D004144 ORTHO05D004902 1.2e-125 453.8 274 84.3
SalBow3G3518 Salvia bowleyana HOM05D004144 ORTHO05D004902 5.8e-125 451.4 282 81.9
MSTRG.15643 Avicennia marina HOM05D004144 ORTHO05D004902 4.8e-119 431.8 280 78.2
Migut.H02241 Erythranthe guttata HOM05D004144 ORTHO05D004902 1.5e-109 400.2 310 70.6
Hma1.2p1_0034F.1_g021300 Hydrangea macrophylla HOM05D004144 ORTHO05D004902 4.8e-103 378.6 198 91.4
unitig_32.g10726 Utricularia gibba HOM05D004144 ORTHO05D004902 2.6e-101 372.9 274 73.0
Cc07_g12990 Coffea canephora HOM05D004144 ORTHO05D004902 3.4e-101 372.5 283 70.0
TAR629G3342 Trochodendron aralioides HOM05D004144 ORTHO05D004902 2.9e-100 369.4 286 68.9
Atru.chr1.1960 Acer truncatum HOM05D004144 ORTHO05D004902 6.5e-100 368.2 280 69.3
Peaxi162Scf00525g00621 Petunia axillaris HOM05D004144 ORTHO05D004902 6.5e-100 368.2 288 70.5
CSS0050506 Camellia sinensis var. sinensis HOM05D004144 ORTHO05D004902 1.1e-99 367.5 192 92.7
Ciclev10002120m.g Citrus clementina HOM05D004144 ORTHO05D004902 1.4e-99 367.1 281 70.1
Nitab4.5_0013309g0010 Nicotiana tabacum HOM05D004144 ORTHO05D004902 1.4e-99 367.1 288 69.8
CiPaw.04G048600 Carya illinoinensis HOM05D004144 ORTHO05D004902 1.9e-99 366.7 290 67.9
Oeu062160.1 Olea europaea HOM05D004144 ORTHO05D004902 1.9e-99 366.7 287 67.9
vmacro18517 Vaccinium macrocarpon HOM05D004144 ORTHO05D004902 3.2e-99 365.9 289 68.2
Phvul.001G227800 Phaseolus vulgaris HOM05D004144 ORTHO05D004902 7.1e-99 364.8 272 69.5
Lj4A255T25 Lonicera japonica HOM05D004144 ORTHO05D004902 1.2e-98 364.0 219 82.2
Sed0013521 Sechium edule HOM05D004144 ORTHO05D004902 2.1e-98 363.2 222 82.0
Lsat_1_v5_gn_3_67200 Lactuca sativa HOM05D004144 ORTHO05D004902 3.5e-98 362.5 283 66.8
Sed0015810 Sechium edule HOM05D004144 ORTHO05D004902 3.5e-98 362.5 195 90.8
VMungo1383G1060 Vigna mungo HOM05D004144 ORTHO05D004902 3.5e-98 362.5 283 68.9
Lalb_Chr18g0053671 Lupinus albus HOM05D004144 ORTHO05D004902 7.9e-98 361.3 192 89.6
Sc18g0000970 Simmondsia chinensis HOM05D004144 ORTHO05D004902 1.0e-97 360.9 198 86.4
CAN.G616.15 Capsicum annuum HOM05D004144 ORTHO05D004902 1.3e-97 360.5 246 76.0
ClCG07G009570 Citrullus lanatus HOM05D004144 ORTHO05D004902 1.3e-97 360.5 240 77.1
Glyma.18G043100 Glycine max HOM05D004144 ORTHO05D004902 1.3e-97 360.5 286 67.1
MELO3C017589.2 Cucumis melo HOM05D004144 ORTHO05D004902 1.8e-97 360.1 223 81.6
Lalb_Chr20g0117051 Lupinus albus HOM05D004144 ORTHO05D004902 1.8e-97 360.1 284 66.5
Sopen05g007260 Solanum pennellii HOM05D004144 ORTHO05D004902 1.8e-97 360.1 287 68.3
Glyma.11G213600 Glycine max HOM05D004144 ORTHO05D004902 5.1e-97 358.6 284 66.9
Prupe.7G012700 Prunus persica HOM05D004144 ORTHO05D004902 8.7e-97 357.8 192 90.6
RcHm_v2.0_Chr3g0452351 Rosa chinensis HOM05D004144 ORTHO05D004902 1.5e-96 357.1 192 89.6
MD07G1041100 Malus domestica HOM05D004144 ORTHO05D004902 1.9e-96 356.7 192 90.1
Hund18774 Selenicereus undatus HOM05D004144 ORTHO05D004902 1.9e-96 356.7 204 84.3
Eucgr.J01628 Eucalyptus grandis HOM05D004144 ORTHO05D004902 2.5e-96 356.3 219 80.4
RcHm_v2.0_Chr1g0359421 Rosa chinensis HOM05D004144 ORTHO05D004902 2.5e-96 356.3 240 75.0
Gorai.001G122400 Gossypium raimondii HOM05D004144 ORTHO05D004902 3.3e-96 355.9 223 80.3
EL10Ac1g00114 Beta vulgaris HOM05D004144 ORTHO05D004902 5.7e-96 355.1 189 89.4
Lj6g0015186 Lotus japonicus HOM05D004144 ORTHO05D004902 5.7e-96 355.1 192 87.5
arahy.Tifrunner.gnm1.ann1.87SQNY Arachis hypogaea HOM05D004144 ORTHO05D004902 7.4e-96 354.8 192 88.0
arahy.Tifrunner.gnm1.ann1.U9M4C7 Arachis hypogaea HOM05D004144 ORTHO05D004902 7.4e-96 354.8 192 88.0
Gohir.D07G114100 Gossypium hirsutum HOM05D004144 ORTHO05D004902 9.6e-96 354.4 223 79.8
BolC8t52845H Brassica oleracea HOM05D004144 ORTHO05D004902 1.3e-95 354.0 275 69.1
Gohir.A11G203400 Gossypium hirsutum HOM05D004144 ORTHO05D004902 1.3e-95 354.0 223 79.4
Sp1g01500 Schrenkiella parvula HOM05D004144 ORTHO05D004902 1.3e-95 354.0 193 88.1
BcaC07g42390 Brassica carinata HOM05D004144 ORTHO05D004902 2.1e-95 353.2 274 69.0
C08p53300 Brassica napus HOM05D004144 ORTHO05D004902 2.1e-95 353.2 275 68.4
ECA238G1245 Erigeron canadensis HOM05D004144 ORTHO05D004902 2.1e-95 353.2 198 83.8
MD02G1272100 Malus domestica HOM05D004144 ORTHO05D004902 2.1e-95 353.2 192 89.1
vmacro19339 Vaccinium macrocarpon HOM05D004144 ORTHO05D004902 2.8e-95 352.8 323 61.9
Thhalv10008363m.g Eutrema salsugineum HOM05D004144 ORTHO05D004902 3.7e-95 352.4 193 87.6
Prupe.3G281100 Prunus persica HOM05D004144 ORTHO05D004902 3.7e-95 352.4 191 89.0
Carub.0001s0149 Capsella rubella HOM05D004144 ORTHO05D004902 4.8e-95 352.1 276 69.2
TPR.G26653 Trifolium pratense HOM05D004144 ORTHO05D004902 8.2e-95 351.3 189 89.4
AT1G02410 Arabidopsis thaliana HOM05D004144 ORTHO05D004902 1.1e-94 350.9 193 87.0
A09p68730 Brassica napus HOM05D004144 ORTHO05D004902 1.1e-94 350.9 193 87.6
Gohir.A07G110500 Gossypium hirsutum HOM05D004144 ORTHO05D004902 1.1e-94 350.9 188 90.4
Ca_17077_v3 Cicer arietinum L. HOM05D004144 ORTHO05D004902 1.4e-94 350.5 189 88.4
Aa31LG1G10050 Aethionema arabicum HOM05D004144 ORTHO05D004902 2.4e-94 349.7 278 67.3
CARHR001740 Cardamine hirsuta HOM05D004144 ORTHO05D004902 2.4e-94 349.7 193 87.0
PGR042G3225 Punica granatum HOM05D004144 ORTHO05D004902 2.4e-94 349.7 193 87.6
AL1G11770 Arabidopsis lyrata HOM05D004144 ORTHO05D004902 3.1e-94 349.4 193 87.0
BcaC07g42317 Brassica carinata HOM05D004144 ORTHO05D004902 4.0e-94 349.0 192 87.5
Duzib170G0191 Durio zibethinus HOM05D004144 ORTHO05D004902 4.0e-94 349.0 228 77.2
THA.LOC104815917 Tarenaya hassleriana HOM05D004144 ORTHO05D004902 4.0e-94 349.0 199 83.9
Manes.16G049900 Manihot esculenta HOM05D004144 ORTHO05D004902 1.2e-93 347.4 189 85.7
PGR102G3261 Punica granatum HOM05D004144 ORTHO05D004902 1.2e-93 347.4 202 84.2
HanXRQChr16g0532751 Helianthus annuus HOM05D004144 ORTHO05D004902 1.5e-93 347.1 190 85.8
MBI16_g12479_MAGBIO Magnolia biondii HOM05D004144 ORTHO05D004902 1.5e-93 347.1 250 71.2
CDE04G3693 Ceratophyllum demersum HOM05D004144 ORTHO05D004902 2.6e-93 346.3 277 65.7
Psat5g142040 Pisum sativum HOM05D004144 ORTHO05D004902 4.5e-93 345.5 203 82.3
Thecc.09G283000 Theobroma cacao HOM05D004144 ORTHO05D004902 5.8e-93 345.1 176 94.9
Medtr3g053650 Medicago truncatula HOM05D004144 ORTHO05D004902 1.3e-92 344.0 215 79.5
Atru.chr4.1444 Acer truncatum HOM05D004144 ORTHO05D004902 1.7e-92 343.6 307 61.6
Cfa007770 Carpinus fangiana HOM05D004144 ORTHO05D004902 1.7e-92 343.6 290 64.5
A08p37680 Brassica napus HOM05D004144 ORTHO05D004902 2.2e-92 343.2 274 66.8
BraA08t35664Z Brassica rapa HOM05D004144 ORTHO05D004902 2.2e-92 343.2 274 66.8
C03p00140 Brassica napus HOM05D004144 ORTHO05D004902 3.8e-92 342.4 273 66.7
BraA09t42212Z Brassica rapa HOM05D004144 ORTHO05D004902 3.8e-92 342.4 202 83.2
Nn1g04486 Nelumbo nucifera HOM05D004144 ORTHO05D004902 5.0e-92 342.0 195 84.1
Haze_14304 Corylus avellana HOM05D004144 ORTHO05D004902 6.5e-92 341.7 252 69.4
BcaC05g24628 Brassica carinata HOM05D004144 ORTHO05D004902 1.1e-91 340.9 193 84.5
TWI23G0771 Tripterygium wilfordii HOM05D004144 ORTHO05D004902 2.5e-91 339.7 285 62.5
A10p01190 Brassica napus HOM05D004144 ORTHO05D004902 3.2e-91 339.3 192 83.9
CiPaw.03G077800 Carya illinoinensis HOM05D004144 ORTHO05D004902 7.1e-91 338.2 271 66.4
CsaV3_UNG144100 Cucumis sativus L. HOM05D004144 ORTHO05D004902 7.1e-91 338.2 262 69.5
Oeu048969.2 Olea europaea HOM05D004144 ORTHO05D004902 9.3e-91 337.8 308 60.1
PSO170G2172 Papaver somniferum HOM05D004144 ORTHO05D004902 1.2e-90 337.4 272 65.8
BcaB01g06136 Brassica carinata HOM05D004144 ORTHO05D004902 3.5e-90 335.9 272 65.4
BolC3t12580H Brassica oleracea HOM05D004144 ORTHO05D004902 3.5e-90 335.9 272 65.4
ATR0626G272 Amborella trichopoda HOM05D004144 ORTHO05D004902 6.1e-90 335.1 199 81.9
Duzib168G0342 Durio zibethinus HOM05D004144 ORTHO05D004902 1.3e-89 334.0 220 77.7
GSVIVG01024421001 Vitis vinifera HOM05D004144 ORTHO05D004902 1.8e-89 333.6 288 63.9
COL.COLO4_19858 Corchorus olitorius HOM05D004144 ORTHO05D004902 5.1e-89 332.0 225 74.7
CsaV3_4G004740 Cucumis sativus L. HOM05D004144 ORTHO05D004902 5.1e-89 332.0 218 77.5
Zm00001eb055360 Zea mays HOM05D004144 ORTHO05D004902 1.9e-88 330.1 185 83.8
arahy.Tifrunner.gnm1.ann1.F8HJNJ Arachis hypogaea HOM05D004144 ORTHO05D004902 2.5e-88 329.7 343 55.4
FAN06G4796 Fragaria x ananassa HOM05D004144 ORTHO05D004902 7.4e-88 328.2 191 84.3
C05p01210 Brassica napus HOM05D004144 ORTHO05D004902 2.2e-87 326.6 197 81.2
BolC5t28904H Brassica oleracea HOM05D004144 ORTHO05D004902 2.8e-87 326.2 198 80.3
FAN01G2657 Fragaria x ananassa HOM05D004144 ORTHO05D004902 2.8e-87 326.2 182 86.8
FAN10G1720 Fragaria x ananassa HOM05D004144 ORTHO05D004902 2.8e-87 326.2 182 86.8
FAN10G4152 Fragaria x ananassa HOM05D004144 ORTHO05D004902 2.8e-87 326.2 182 86.8
Os03g0718600 Oryza sativa ssp. japonica HOM05D004144 ORTHO05D004902 4.8e-87 325.5 179 84.4
BraA10t42397Z Brassica rapa HOM05D004144 ORTHO05D004902 8.2e-87 324.7 197 79.7
HPP92_002286 Vanilla planifolia HOM05D004144 ORTHO05D004902 1.4e-86 323.9 183 85.2
Potri.001G078500 Populus trichocarpa HOM05D004144 ORTHO05D004902 1.2e-85 320.9 166 91.6
SEGI_01185 Sequoiadendron giganteum HOM05D004144 ORTHO05D004902 4.5e-85 318.9 181 82.9
BcaNung06859 Brassica carinata HOM05D004144 ORTHO05D004902 1.3e-84 317.4 193 79.3
BcaB03g13513 Brassica carinata HOM05D004144 ORTHO05D004902 3.2e-83 312.8 277 62.1
Actinidia28789 Actinidia chinensis HOM05D004144 ORTHO05D004902 2.1e-82 310.1 221 73.3
Aqoxy3G04002 Aquilegia oxysepala HOM05D004144 ORTHO05D004902 7.9e-82 308.1 282 59.2
Lj2A513G59 Lonicera japonica HOM05D004144 ORTHO05D004902 1.1e-80 304.3 181 82.9
Solyc05g012440.4 Solanum lycopersicum HOM05D004144 ORTHO05D004902 4.3e-80 302.4 155 93.5
C04p03290 Brassica napus HOM05D004144 ORTHO05D004902 5.7e-80 302.0 179 82.1
BcaB01g06133 Brassica carinata HOM05D004144 ORTHO05D004902 4.1e-78 295.8 281 60.1
Dinv19068 Davidia involucrata HOM05D004144 ORTHO05D000107 3.4e-77 292.7 146 93.8
PSO782G2695 Papaver somniferum HOM05D004144 ORTHO05D004902 3.6e-74 282.7 152 88.2
FAN03G0820 Fragaria x ananassa HOM05D004144 ORTHO05D004902 4.7e-74 282.3 149 91.3
SMO169G0145 Selaginella moellendorffii HOM05D004144 ORTHO05D004902 6.1e-74 282.0 180 72.2
Sabra01G0055800 Salix brachista HOM05D004144 ORTHO05D004902 3.0e-73 279.6 372 46.0
Mapoly0070s0059 Marchantia polymorpha HOM05D004144 ORTHO05D004902 3.9e-73 279.3 181 71.8
Medtr3g064810 Medicago truncatula HOM05D004144 ORTHO05D004902 6.7e-73 278.5 191 74.3
Rhsim08G0020500 Rhododendron simsii HOM05D004144 ORTHO05D004902 6.5e-68 261.9 247 59.5
AagrBONN_evm.TU.Sc2ySwM_228.342 Anthoceros agrestis HOM05D004144 ORTHO05D004902 2.5e-67 260.0 165 73.9
CBR_g51986 Chara braunii HOM05D004144 ORTHO05D004902 2.5e-67 260.0 189 65.6
Rhsim05G0054900 Rhododendron simsii HOM05D004144 ORTHO05D004902 4.4e-64 249.2 219 63.9
AUR62023515 Chenopodium quinoa HOM05D004144 ORTHO05D004902 3.7e-63 246.1 177 68.9
Nitab4.5_0000905g0140 Nicotiana tabacum HOM05D004144 ORTHO05D004902 3.7e-63 246.1 228 64.5
QL02p060046 Quercus lobata HOM05D004144 ORTHO05D004902 9.1e-62 241.5 232 59.9
CANSAT35G0424 Cannabis sativa HOM05D004144 ORTHO05D004902 1.2e-61 241.1 227 59.9
MCO11G668 Micromonas commoda HOM05D004144 ORTHO05D004902 2.7e-58 229.9 176 60.2
AUR62037409 Chenopodium quinoa HOM05D004144 ORTHO05D004902 1.4e-57 227.6 137 82.5
Cre01.g055550 Chlamydomonas reinhardtii HOM05D004144 ORTHO05D004902 2.0e-56 223.8 198 57.1
SHI20752 Sapria himalayana HOM05D004144 ORTHO05D004902 2.6e-56 223.4 160 70.0
Hma1.2p1_0158F.1_g069830 Hydrangea macrophylla HOM05D004144 ORTHO05D004902 9.8e-48 194.9 226 51.3
PRCOL_00006103 Prasinoderma coloniale HOM05D004144 ORTHO05D004902 2.3e-44 183.7 188 50.5
Haze_26263 Corylus avellana HOM05D004144 ORTHO05D004902 4.2e-43 179.5 187 46.5
CsaV3_UNG141080 Cucumis sativus L. HOM05D004144 ORTHO05D004902 7.5e-40 168.7 127 70.9
CsaV3_UNG216460 Cucumis sativus L. HOM05D004144 ORTHO05D004902 7.5e-40 168.7 127 70.9
Haze_26986 Corylus avellana HOM05D004144 ORTHO05D004902 1.8e-38 164.1 178 43.3
BcaB03g15782 Brassica carinata HOM05D004144 ORTHO05D004902 4.6e-37 159.5 146 57.5
BcaNung07044 Brassica carinata HOM05D004144 ORTHO05D004902 5.9e-37 159.1 100 77.0
Cfa022599 Carpinus fangiana HOM05D004144 ORTHO05D004902 1.5e-35 154.5 146 54.8
DCAR_025183 Daucus carota HOM05D002069 ORTHO05D004902 1.2e-32 144.8 77 88.3
BcaB03g13511 Brassica carinata HOM05D004144 ORTHO05D004902 2.0e-32 144.1 179 50.8
BcaB08g36056 Brassica carinata HOM05D004144 ORTHO05D004902 5.8e-32 142.5 101 74.3
Pp3c16_1230 Physcomitrium patens HOM05D004144 ORTHO05D004902 2.4e-30 137.1 128 55.5
Gohir.A10G080150 Gossypium hirsutum HOM05D004144 ORTHO05D004902 4.6e-29 132.9 96 71.9
TAR002G0001 Trochodendron aralioides HOM05D004144 ORTHO05D004902 2.3e-28 130.6 167 49.7
BolC9t57687H Brassica oleracea HOM05D004144 ORTHO05D004902 5.0e-28 129.4 93 77.4
Dinv36681 Davidia involucrata HOM05D004144 ORTHO05D004902 1.1e-25 121.7 107 57.9
BcaNung06862 Brassica carinata HOM05D004144 ORTHO05D004902 2.0e-24 117.5 93 65.6
AUR62038774 Chenopodium quinoa HOM05D004144 ORTHO05D004902 3.4e-24 116.7 70 80.0
BcaC02g12462 Brassica carinata HOM05D004144 ORTHO05D004902 4.9e-23 112.8 69 76.8
Gohir.A08G125401 Gossypium hirsutum HOM05D004144 ORTHO05D004902 1.2e-21 108.2 106 56.6
BcaC04g20051 Brassica carinata HOM05D004144 ORTHO05D004902 1.6e-21 107.8 96 63.5
BcaNung06861 Brassica carinata HOM05D004144 ORTHO05D004902 7.3e-19 99.0 66 69.7
arahy.Tifrunner.gnm1.ann1.GZZ31L Arachis hypogaea HOM05D001327 ORTHO05D004902 9.5e-19 98.6 67 71.6
C09p48370 Brassica napus HOM05D004144 ORTHO05D004902 1.8e-17 94.4 85 58.8
Oeu009435.1 Olea europaea HOM05D004144 ORTHO05D004902 1.8e-17 94.4 48 89.6
HanXRQChr03g0088171 Helianthus annuus HOM05D004144 ORTHO05D004902 1.2e-16 91.7 50 84.0
HanXRQChr13g0395861 Helianthus annuus HOM05D004144 ORTHO05D004902 1.2e-16 91.7 50 84.0
arahy.Tifrunner.gnm1.ann1.9TQH81 Arachis hypogaea HOM05D001327 ORTHO05D001271 1.3e-15 88.2 62 71.0
BcaC05g24626 Brassica carinata HOM05D004144 ORTHO05D004902 1.6e-13 81.3 53 71.7
arahy.Tifrunner.gnm1.ann1.X1YH8V Arachis hypogaea HOM05D004144 ORTHO05D038922 1.0e-12 78.6 63 66.7
CDE06G2511 Ceratophyllum demersum HOM05D004144 ORTHO05D004902 1.7e-12 77.8 138 42.8
Oeu009434.1 Olea europaea HOM05D004144 ORTHO05D004902 8.1e-10 68.9 36 88.9


User provided reference genes

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