Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold108G30985 Striga asiatica HOM05D004334 ORTHO05D004763 1.3e-165 586.3 295 100.0
Migut.H02192 Erythranthe guttata HOM05D004334 ORTHO05D004763 1.5e-119 433.3 350 65.7
MSTRG.2739 Avicennia marina HOM05D004334 ORTHO05D004763 2.8e-115 419.1 350 64.9
Oeu012549.1 Olea europaea HOM05D004334 ORTHO05D004763 1.8e-109 399.8 354 59.6
SGA_v2.0_scaffold2G00960 Striga asiatica HOM05D004334 ORTHO05D004763 5.8e-108 394.8 295 73.9
Cc07_g11490 Coffea canephora HOM05D004334 ORTHO05D004763 8.6e-104 380.9 354 55.9
Oeu039717.1 Olea europaea HOM05D004334 ORTHO05D004763 5.6e-103 378.3 354 58.2
CSS0027377 Camellia sinensis var. sinensis HOM05D004334 ORTHO05D004763 3.9e-96 355.5 345 56.2
TWI73G1167 Tripterygium wilfordii HOM05D004334 ORTHO05D004763 1.9e-95 353.2 345 56.2
CSS0049695 Camellia sinensis var. sinensis HOM05D004334 ORTHO05D004763 4.3e-95 352.1 344 54.1
vmacro18446 Vaccinium macrocarpon HOM05D004334 ORTHO05D004763 2.1e-94 349.7 340 54.4
Rhsim08G0028900 Rhododendron simsii HOM05D004334 ORTHO05D004763 5.2e-93 345.1 369 50.7
CiPaw.08G179800 Carya illinoinensis HOM05D004334 ORTHO05D004763 1.5e-92 343.6 346 54.9
Potri.005G104700 Populus trichocarpa HOM05D004334 ORTHO05D004763 2.6e-92 342.8 336 56.2
Hma1.2p1_0315F.1_g122750 Hydrangea macrophylla HOM05D004334 ORTHO05D004763 3.4e-92 342.4 346 54.0
TWI53G1416 Tripterygium wilfordii HOM05D004334 ORTHO05D004763 3.4e-92 342.4 321 57.3
Actinidia17393 Actinidia chinensis HOM05D004334 ORTHO05D004763 3.7e-91 339.0 337 56.1
MD15G1235400 Malus domestica HOM05D004334 ORTHO05D004763 4.9e-91 338.6 345 53.0
FvH4_1g10780 Fragaria vesca HOM05D004334 ORTHO05D004763 2.4e-90 336.3 346 54.9
Gorai.007G189900 Gossypium raimondii HOM05D004334 ORTHO05D004763 4.1e-90 335.5 347 54.2
Cfa007045 Carpinus fangiana HOM05D004334 ORTHO05D004763 7.1e-90 334.7 338 55.3
Nn6g31831 Nelumbo nucifera HOM05D004334 ORTHO05D004763 4.6e-89 332.0 347 53.0
Gohir.D11G178000 Gossypium hirsutum HOM05D004334 ORTHO05D004763 6.0e-89 331.6 346 53.8
CAN.G890.9 Capsicum annuum HOM05D004334 ORTHO05D004763 6.6e-88 328.2 355 53.2
Prupe.7G177700 Prunus persica HOM05D004334 ORTHO05D004763 1.1e-87 327.4 339 54.3
Gohir.A11G171000 Gossypium hirsutum HOM05D004334 ORTHO05D004763 1.5e-87 327.0 346 53.5
RcHm_v2.0_Chr2g0097961 Rosa chinensis HOM05D004334 ORTHO05D004763 4.3e-87 325.5 346 54.0
Sopen02g027910 Solanum pennellii HOM05D004334 ORTHO05D004763 4.3e-87 325.5 353 52.7
Thecc.01G009500 Theobroma cacao HOM05D004334 ORTHO05D004763 5.6e-87 325.1 348 53.2
MD02G1121800 Malus domestica HOM05D004334 ORTHO05D004763 1.6e-86 323.6 345 53.0
Atru.chr3.934 Acer truncatum HOM05D004334 ORTHO05D004763 2.1e-86 323.2 346 53.2
CiPaw.07G005200 Carya illinoinensis HOM05D004334 ORTHO05D004763 2.8e-86 322.8 346 53.5
Gorai.003G004400 Gossypium raimondii HOM05D004334 ORTHO05D004763 1.1e-85 320.9 351 51.6
Ciclev10025980m.g Citrus clementina HOM05D004334 ORTHO05D004763 1.4e-85 320.5 345 51.3
TAR376G1081 Trochodendron aralioides HOM05D004334 ORTHO05D004763 1.4e-85 320.5 345 50.7
PGSC0003DMG400001577 Solanum tuberosum HOM05D004334 ORTHO05D004763 1.8e-85 320.1 353 52.1
Gohir.D03G004200 Gossypium hirsutum HOM05D004334 ORTHO05D004763 2.4e-85 319.7 351 51.6
Solyc02g083150.3 Solanum lycopersicum HOM05D004334 ORTHO05D004763 2.0e-84 316.6 354 52.3
Lsat_1_v5_gn_4_143501 Lactuca sativa HOM05D004334 ORTHO05D004763 5.8e-84 315.1 344 52.0
Aqoxy6G01836 Aquilegia oxysepala HOM05D004334 ORTHO05D004763 1.7e-83 313.5 352 48.0
ECA232G0620 Erigeron canadensis HOM05D003302 ORTHO05D003785 4.9e-83 312.0 332 51.2
Eucgr.I02283 Eucalyptus grandis HOM05D004334 ORTHO05D004763 1.1e-82 310.8 341 52.5
MELO3C007955.2 Cucumis melo HOM05D004334 ORTHO05D004763 3.2e-82 309.3 344 50.9
FAN23G2490 Fragaria x ananassa HOM05D004334 ORTHO05D004763 4.2e-82 308.9 329 54.7
CsaV3_6G047640 Cucumis sativus L. HOM05D004334 ORTHO05D004763 9.2e-82 307.8 344 51.5
CAN.G23.17 Capsicum annuum HOM05D004334 ORTHO05D004763 1.2e-81 307.4 352 49.4
Manes.03G080400 Manihot esculenta HOM05D004334 ORTHO05D004763 2.7e-81 306.2 345 49.9
HanXRQChr09g0256961 Helianthus annuus HOM05D004334 ORTHO05D004763 2.3e-80 303.1 338 52.1
Hund03662 Selenicereus undatus HOM05D004334 ORTHO05D004763 2.3e-80 303.1 349 49.3
arahy.Tifrunner.gnm1.ann1.R6TSSQ Arachis hypogaea HOM05D004334 ORTHO05D004763 3.9e-80 302.4 386 45.6
Ca_24954_v3 Cicer arietinum L. HOM05D004334 ORTHO05D004763 6.6e-80 301.6 345 48.4
PGR119G0893 Punica granatum HOM05D004334 ORTHO05D004763 2.8e-78 296.2 337 50.4
Phvul.002G112900 Phaseolus vulgaris HOM05D004334 ORTHO05D004763 4.7e-78 295.4 346 47.4
Gohir.A02G175700 Gossypium hirsutum HOM05D004334 ORTHO05D004763 8.1e-78 294.7 334 50.9
MBI05_g39718_MAGBIO Magnolia biondii HOM05D004334 ORTHO05D004763 1.1e-77 294.3 346 48.0
Lalb_Chr05g0212061 Lupinus albus HOM05D004334 ORTHO05D004763 2.4e-77 293.1 347 48.7
FAN19G0005 Fragaria x ananassa HOM05D004334 ORTHO05D004763 2.0e-76 290.0 342 51.5
CSS0034111 Camellia sinensis var. sinensis HOM05D004334 ORTHO05D004763 2.6e-76 289.7 261 56.7
Actinidia02363 Actinidia chinensis HOM05D004334 ORTHO05D004763 3.4e-76 289.3 261 57.5
Glyma.11G082600 Glycine max HOM05D004334 ORTHO05D004763 9.9e-76 287.7 346 47.4
Haze_03684 Corylus avellana HOM05D004334 ORTHO05D004763 2.2e-75 286.6 352 50.0
ATR0661G230 Amborella trichopoda HOM05D004334 ORTHO05D004763 2.9e-75 286.2 346 45.7
Peaxi162Scf00300g00517 Petunia axillaris HOM05D004334 ORTHO05D004763 3.8e-75 285.8 337 50.7
Lj2g0016931 Lotus japonicus HOM05D004334 ORTHO05D004763 8.4e-75 284.6 342 46.8
Nitab4.5_0000188g0270 Nicotiana tabacum HOM05D004334 ORTHO05D004763 5.4e-74 282.0 330 48.8
Duzib147G0009 Durio zibethinus HOM05D004334 ORTHO05D004763 7.1e-74 281.6 296 54.7
Solyc02g061810.3 Solanum lycopersicum HOM05D004334 ORTHO05D004763 2.1e-73 280.0 338 46.7
Carub.0005s1777 Capsella rubella HOM05D004334 ORTHO05D004763 2.7e-73 279.6 352 48.6
Dinv08539 Davidia involucrata HOM05D004334 ORTHO05D004763 3.5e-73 279.3 293 56.3
Thhalv10010516m.g Eutrema salsugineum HOM05D004334 ORTHO05D004763 6.0e-73 278.5 352 48.6
SalBow3G0047 Salvia bowleyana HOM05D004334 ORTHO05D004763 7.8e-73 278.1 345 49.3
PSO675G0891 Papaver somniferum HOM05D004334 ORTHO05D004763 1.3e-72 277.3 346 44.5
Potri.007G060100 Populus trichocarpa HOM05D004334 ORTHO05D004763 1.3e-72 277.3 343 48.4
PGR102G0214 Punica granatum HOM05D004334 ORTHO05D004763 1.3e-72 277.3 345 48.1
PSO541G2607 Papaver somniferum HOM05D004334 ORTHO05D004763 1.7e-72 276.9 346 44.2
Sopen02g012850 Solanum pennellii HOM05D004334 ORTHO05D004763 6.6e-72 275.0 332 46.1
Ah.02g129060 Amaranthus hybridus HOM05D004334 ORTHO05D004763 8.7e-72 274.6 326 50.0
EL10Ac6g13347 Beta vulgaris HOM05D004334 ORTHO05D004763 1.9e-71 273.5 346 45.4
Lj4A228G17 Lonicera japonica HOM05D004334 ORTHO05D004763 1.9e-71 273.5 236 62.7
TPR.G25124 Trifolium pratense HOM05D004334 ORTHO05D004763 3.3e-71 272.7 341 44.9
Medtr5g023230 Medicago truncatula HOM05D004334 ORTHO05D004763 4.3e-71 272.3 337 45.7
ClCG01G020710 Citrullus lanatus HOM05D004334 ORTHO05D004763 1.6e-70 270.4 355 47.3
FAN09G1010 Fragaria x ananassa HOM05D004334 ORTHO05D004763 8.1e-70 268.1 347 48.1
FAN09G3278 Fragaria x ananassa HOM05D004334 ORTHO05D004763 8.1e-70 268.1 347 48.1
AL5G31840 Arabidopsis lyrata HOM05D004334 ORTHO05D004763 3.1e-69 266.2 352 47.2
FvH4_6g14950 Fragaria vesca HOM05D004334 ORTHO05D004763 3.1e-69 266.2 347 50.4
Nn5g30900 Nelumbo nucifera HOM05D004334 ORTHO05D004763 3.1e-69 266.2 323 48.0
Lalb_Chr09g0321381 Lupinus albus HOM05D002155 ORTHO05D004763 4.0e-69 265.8 332 48.2
THA.LOC104821351 Tarenaya hassleriana HOM05D004334 ORTHO05D004763 4.0e-69 265.8 350 46.0
FAN14G2747 Fragaria x ananassa HOM05D004334 ORTHO05D004763 5.3e-69 265.4 347 50.4
unitig_699.g19572 Utricularia gibba HOM05D004334 ORTHO05D004763 5.3e-69 265.4 302 46.7
AT3G51390 Arabidopsis thaliana HOM05D004334 ORTHO05D004763 1.5e-68 263.8 352 46.9
Nitab4.5_0004994g0030 Nicotiana tabacum HOM05D004334 ORTHO05D004763 2.0e-68 263.5 353 46.2
Eucgr.J02517 Eucalyptus grandis HOM05D004334 ORTHO05D004763 3.8e-67 259.2 333 48.9
HanXRQChr15g0487491 Helianthus annuus HOM05D004334 ORTHO05D004763 3.8e-67 259.2 344 44.8
FAN05G4181 Fragaria x ananassa HOM05D004334 ORTHO05D004763 4.2e-66 255.8 347 47.3
A09p44490 Brassica napus HOM05D004334 ORTHO05D004763 1.2e-65 254.2 356 44.7
BraA09t39907Z Brassica rapa HOM05D004334 ORTHO05D004763 1.2e-65 254.2 356 44.7
Sp5g10830 Schrenkiella parvula HOM05D004334 ORTHO05D004763 4.6e-65 252.3 352 45.5
BolC8t50281H Brassica oleracea HOM05D004334 ORTHO05D004763 1.0e-64 251.1 356 44.4
BcaB01g00520 Brassica carinata HOM05D004334 ORTHO05D004763 1.1e-63 247.7 355 43.9
C08p26670 Brassica napus HOM05D004334 ORTHO05D004763 3.3e-63 246.1 355 43.9
BcaNung00388 Brassica carinata HOM05D004334 ORTHO05D004763 5.6e-63 245.4 330 47.6
Sabra05G0086000 Salix brachista HOM05D004334 ORTHO05D004763 9.6e-63 244.6 425 39.3
CARHR160990 Cardamine hirsuta HOM05D004334 ORTHO05D004763 4.8e-62 242.3 349 44.7
BraA01t02255Z Brassica rapa HOM05D004334 ORTHO05D004763 2.5e-58 229.9 345 44.9
arahy.Tifrunner.gnm1.ann1.106C79 Arachis hypogaea HOM05D004334 ORTHO05D004763 9.3e-58 228.0 316 41.5
MBI08_g35872_MAGBIO Magnolia biondii HOM05D004334 ORTHO05D004763 6.0e-57 225.3 326 45.4
Lsat_1_v5_gn_2_75001 Lactuca sativa HOM05D004334 ORTHO05D004763 1.3e-56 224.2 302 43.0
Os12g0480000 Oryza sativa ssp. japonica HOM05D004334 ORTHO05D004763 3.3e-55 219.5 324 40.4
Dinv40159 Davidia involucrata HOM05D004334 ORTHO05D004763 4.3e-55 219.2 243 48.6
Potri.005G104800 Populus trichocarpa HOM05D004334 ORTHO05D004763 8.2e-54 214.9 244 48.8
DCAR_011587 Daucus carota HOM05D004334 ORTHO05D004763 9.0e-53 211.5 303 44.6
Peaxi162Scf00439g00007 Petunia axillaris HOM05D004334 ORTHO05D004763 9.0e-53 211.5 256 46.1
FAN28G1575 Fragaria x ananassa HOM05D004334 ORTHO05D004763 1.2e-52 211.1 149 71.8
unitig_27.g25346 Utricularia gibba HOM05D004334 ORTHO05D004763 1.2e-52 211.1 311 41.8
QL06p052483 Quercus lobata HOM05D004334 ORTHO05D004763 1.5e-52 210.7 149 67.8
FAN26G3296 Fragaria x ananassa HOM05D004334 ORTHO05D004763 3.8e-51 206.1 149 69.8
Sabra07G0050700 Salix brachista HOM05D004334 ORTHO05D004763 4.2e-50 202.6 351 38.2
Nitab4.5_0005413g0010 Nicotiana tabacum HOM05D004334 ORTHO05D004763 1.6e-49 200.7 329 42.9
Zm00001eb187020 Zea mays HOM05D004334 ORTHO05D004763 1.8e-48 197.2 208 46.6
BcaNung05551 Brassica carinata HOM05D004334 ORTHO05D004763 3.9e-48 196.1 238 48.3
Zm00001eb250140 Zea mays HOM05D004334 ORTHO05D004763 1.5e-47 194.1 208 44.7
BcaC09g50093 Brassica carinata HOM05D004334 ORTHO05D004763 2.5e-47 193.4 303 43.2
Sed0027006 Sechium edule HOM05D004334 ORTHO05D004763 2.0e-44 183.7 233 44.6
Ah.03g134170 Amaranthus hybridus HOM05D004334 ORTHO05D004763 2.6e-44 183.3 207 48.8
arahy.Tifrunner.gnm1.ann1.65IKEQ Arachis hypogaea HOM05D004334 ORTHO05D004763 2.2e-43 180.3 241 42.7
arahy.Tifrunner.gnm1.ann1.5JBS04 Arachis hypogaea HOM05D004334 ORTHO05D004763 1.4e-42 177.6 234 42.7
Os04g0562000 Oryza sativa ssp. japonica HOM05D004334 ORTHO05D004763 1.6e-41 174.1 352 33.8
SEGI_01463 Sequoiadendron giganteum HOM05D004334 ORTHO05D004763 4.6e-41 172.6 150 56.0
C01p29130 Brassica napus HOM05D004334 ORTHO05D004763 3.9e-40 169.5 229 48.0
CDE02G4661 Ceratophyllum demersum HOM05D004334 ORTHO05D004763 5.1e-40 169.1 311 37.3
Sc03g0003810 Simmondsia chinensis HOM05D004334 ORTHO05D004763 6.7e-40 168.7 253 40.3
Psat2g151080 Pisum sativum HOM05D004334 ORTHO05D004763 8.8e-40 168.3 229 39.3
BolC1t02844H Brassica oleracea HOM05D004334 ORTHO05D004763 2.5e-39 166.8 262 43.9
QL06p052479 Quercus lobata HOM05D004334 ORTHO05D004763 2.6e-36 156.8 177 48.0
Nitab4.5_0001310g0110 Nicotiana tabacum HOM05D004334 ORTHO05D004763 1.3e-35 154.5 133 61.7
FAN26G1367 Fragaria x ananassa HOM05D004334 ORTHO05D004763 1.6e-33 147.5 167 50.9
FAN02G4027 Fragaria x ananassa HOM05D004334 ORTHO05D004763 5.1e-32 142.5 243 42.8
Pp3c11_17220 Physcomitrium patens HOM05D004334 ORTHO05D004763 1.3e-30 137.9 140 47.9
Cpa.g.sc6.335 Carica papaya HOM05D004334 ORTHO05D004763 1.7e-30 137.5 140 53.6
A01p23480 Brassica napus HOM05D004334 ORTHO05D004763 3.1e-29 133.3 142 54.2
Pp3c2_20610 Physcomitrium patens HOM05D004334 ORTHO05D004763 3.1e-29 133.3 140 48.6
VMungo1215G1979 Vigna mungo HOM05D004334 ORTHO05D004763 3.1e-29 133.3 173 43.4
Pp3c1_15780 Physcomitrium patens HOM05D004334 ORTHO05D004763 3.0e-24 116.7 140 42.1
AUR62026202 Chenopodium quinoa HOM05D004334 ORTHO05D004763 1.2e-20 104.8 151 41.1
Mapoly0218s0003 Marchantia polymorpha HOM05D004334 ORTHO05D004763 3.5e-20 103.2 189 32.3
SHI49197 Sapria himalayana HOM05D004334 ORTHO05D004763 3.5e-20 103.2 123 39.8
SMO347G0399 Selaginella moellendorffii HOM05D004334 ORTHO05D004763 3.8e-19 99.8 147 40.8
AUR62026391 Chenopodium quinoa HOM05D004334 ORTHO05D004763 1.9e-18 97.4 151 38.4
PGSC0003DMG402008678 Solanum tuberosum HOM05D004334 ORTHO05D004763 6.1e-17 92.4 60 71.7
COL.COLO4_22515 Corchorus olitorius HOM05D004334 ORTHO05D004763 8.0e-17 92.0 81 69.1
Actinidia22928 Actinidia chinensis HOM05D004334 ORTHO05D004763 8.3e-14 82.0 96 44.8
HPP92_022390 Vanilla planifolia HOM05D004334 ORTHO05D004763 8.3e-14 82.0 148 37.8
Sabra07G0050800 Salix brachista HOM05D004334 ORTHO05D004763 3.1e-13 80.1 118 41.5
MBI08_g09580_MAGBIO Magnolia biondii HOM05D004334 ORTHO05D004763 4.1e-13 79.7 64 54.7
QL10p037295 Quercus lobata HOM05D004334 ORTHO05D004763 1.6e-12 77.8 78 50.0
AagrBONN_evm.TU.Sc2ySwM_117.683 Anthoceros agrestis HOM05D000571 ORTHO05D004763 7.7e-12 75.5 93 41.9
PRCOL_00005340 Prasinoderma coloniale HOM05D004334 ORTHO05D004763 4.2e-10 69.7 151 31.1
PGSC0003DMG403008678 Solanum tuberosum HOM05D004334 ORTHO05D004763 3.0e-08 63.5 62 53.2
Pp3c4_16650 Physcomitrium patens HOM05D000571 ORTHO05D004763 5.7e-07 59.3 83 41.0
MCO11G403 Micromonas commoda HOM05D000571 ORTHO05D004763 2.8e-06 57.0 116 31.9


User provided reference genes

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