Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 9.0e-83 310.1 142 100.0
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 7.4e-69 263.8 142 81.0
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 2.8e-68 261.9 142 80.3
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 6.5e-65 250.8 139 77.7
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 6.5e-65 250.8 138 78.3
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 2.3e-62 242.3 142 74.6
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 8.7e-62 240.4 134 76.1
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 1.5e-61 239.6 138 74.6
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 1.9e-61 239.2 142 72.5
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 4.3e-61 238.0 142 73.2
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 4.3e-61 238.0 138 74.6
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 1.3e-60 236.5 138 73.9
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 1.3e-60 236.5 138 73.9
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 6.3e-60 234.2 133 75.2
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 6.3e-60 234.2 134 75.4
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 1.8e-59 232.6 139 71.9
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 1.8e-59 232.6 134 73.1
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 2.4e-59 232.3 139 71.9
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 2.4e-59 232.3 142 69.7
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 3.1e-59 231.9 142 71.1
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 4.1e-59 231.5 139 71.2
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 9.0e-59 230.3 129 76.0
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 9.0e-59 230.3 134 72.4
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 1.2e-58 229.9 137 69.3
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.5e-58 229.6 141 70.9
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 2.6e-58 228.8 134 72.4
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 5.9e-58 227.6 141 70.9
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 5.9e-58 227.6 135 71.1
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 5.9e-58 227.6 134 71.6
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 7.6e-58 227.3 134 70.9
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.0e-57 226.9 135 71.9
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 1.0e-57 226.9 134 73.9
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 1.0e-57 226.9 142 69.7
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 1.3e-57 226.5 134 70.1
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.3e-57 226.5 135 71.1
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 1.7e-57 226.1 135 73.3
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.2e-57 225.7 135 71.9
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 2.2e-57 225.7 135 73.3
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 5.0e-57 224.6 134 70.1
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 5.0e-57 224.6 135 70.4
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 5.0e-57 224.6 135 71.9
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 5.0e-57 224.6 135 69.6
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 6.5e-57 224.2 135 71.1
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 6.5e-57 224.2 134 70.9
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 6.5e-57 224.2 135 71.1
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 1.1e-56 223.4 138 69.6
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 1.1e-56 223.4 135 70.4
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 1.4e-56 223.0 135 71.1
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 1.4e-56 223.0 134 70.1
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 1.4e-56 223.0 134 70.1
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.4e-56 223.0 135 70.4
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 1.4e-56 223.0 131 71.0
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 1.9e-56 222.6 134 69.4
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 1.9e-56 222.6 135 71.1
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 1.9e-56 222.6 134 70.1
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 1.9e-56 222.6 134 72.4
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 2.5e-56 222.2 137 66.4
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 2.5e-56 222.2 135 70.4
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 2.5e-56 222.2 135 69.6
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.2e-56 221.9 135 69.6
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 3.2e-56 221.9 134 70.1
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 4.2e-56 221.5 139 66.9
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 5.5e-56 221.1 133 69.9
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 5.5e-56 221.1 135 70.4
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 7.2e-56 220.7 128 75.0
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 7.2e-56 220.7 135 70.4
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 7.2e-56 220.7 134 67.9
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.2e-56 220.7 135 71.1
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 7.2e-56 220.7 135 70.4
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 9.3e-56 220.3 136 69.1
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 1.2e-55 219.9 134 68.7
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 1.2e-55 219.9 134 71.6
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.2e-55 219.9 135 68.9
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 1.2e-55 219.9 135 70.4
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 1.6e-55 219.5 134 67.9
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 1.6e-55 219.5 135 69.6
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.6e-55 219.5 127 73.2
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 1.6e-55 219.5 133 67.7
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 2.1e-55 219.2 133 69.9
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 2.1e-55 219.2 134 69.4
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 2.1e-55 219.2 133 72.2
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 2.7e-55 218.8 132 72.0
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 3.6e-55 218.4 132 71.2
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 3.6e-55 218.4 135 68.9
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 3.6e-55 218.4 133 68.4
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 4.6e-55 218.0 135 68.9
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 6.1e-55 217.6 133 69.2
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 7.9e-55 217.2 135 68.9
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 1.0e-54 216.9 135 68.9
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 1.0e-54 216.9 134 69.4
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 1.3e-54 216.5 131 69.5
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.8e-54 216.1 135 68.9
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 3.0e-54 215.3 135 68.9
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.9e-54 214.9 135 67.4
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 1.1e-53 213.4 134 67.9
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 1.1e-53 213.4 135 68.1
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 1.1e-53 213.4 134 68.7
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 1.5e-53 213.0 131 70.2
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 1.5e-53 213.0 130 67.7
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 1.5e-53 213.0 135 68.9
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 2.2e-52 209.1 135 66.7
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.8e-52 208.8 121 72.7
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 2.8e-52 208.8 129 69.8
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 3.7e-52 208.4 134 66.4
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 3.7e-52 208.4 135 65.2
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 4.8e-52 208.0 126 70.6
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 6.3e-52 207.6 140 65.0
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 6.3e-52 207.6 131 67.9
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.1e-51 205.3 131 68.7
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 4.1e-51 204.9 125 72.8
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 5.3e-51 204.5 131 67.9
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 1.5e-50 203.0 133 66.9
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 3.4e-50 201.8 121 71.9
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 4.5e-50 201.4 135 67.4
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 5.9e-50 201.1 177 55.4
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.0e-49 200.3 121 71.1
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 4.2e-48 194.9 133 60.2
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 4.2e-48 194.9 131 64.1
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 5.5e-48 194.5 123 67.5
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 1.6e-47 193.0 129 65.1
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 2.1e-47 192.6 123 64.2
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 4.6e-47 191.4 134 61.2
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.0e-46 190.3 119 66.4
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 1.4e-46 189.9 123 65.0
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 2.3e-46 189.1 126 63.5
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 3.9e-46 188.3 130 62.3
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 2.6e-45 185.7 121 66.9
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.3e-44 183.3 116 65.5
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.7e-44 183.0 135 60.0
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.4e-43 179.1 139 59.0
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 6.9e-43 177.6 101 73.3
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 9.1e-43 177.2 130 60.0
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 2.0e-42 176.0 107 67.3
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 6.5e-41 171.0 130 57.7
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 7.9e-39 164.1 121 61.2
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 7.9e-39 164.1 132 61.4
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 8.8e-38 160.6 131 58.0
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 1.5e-37 159.8 136 57.4
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 2.8e-36 155.6 96 70.8
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 8.5e-33 144.1 96 65.6
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 8.5e-33 144.1 145 43.4
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 9.4e-32 140.6 85 70.6
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 8.0e-31 137.5 98 60.2
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 9.7e-29 130.6 79 70.9
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 6.1e-23 111.3 74 66.2
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 8.0e-23 110.9 70 67.1
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.8e-22 109.8 112 48.2
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 8.3e-20 100.9 63 68.3
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.0e-17 94.0 78 53.8
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 2.9e-17 92.4 80 53.8


User provided reference genes

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