Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1966.8 975 100.0
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1314.7 744 87.4
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1230.3 746 82.4
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1229.2 746 82.6
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1227.6 745 82.7
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1222.6 742 82.3
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1222.2 745 81.7
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1218.8 777 79.0
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1197.2 751 79.5
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1195.6 748 79.8
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1189.9 751 79.2
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1184.9 750 78.7
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1182.5 746 79.6
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1182.5 746 79.2
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1179.9 745 78.9
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1179.5 751 78.3
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1177.9 745 79.1
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1176.0 745 79.5
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1176.0 746 79.1
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1171.0 748 78.6
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1171.0 746 78.8
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1169.8 747 78.3
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1169.1 744 78.2
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1168.7 747 78.4
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1168.3 744 78.6
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1168.3 747 78.6
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1166.4 746 78.6
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1165.6 748 77.3
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1165.6 746 78.4
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1164.4 750 78.3
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1163.7 749 77.4
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1162.9 747 77.6
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1162.5 747 78.2
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1161.7 749 78.0
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1161.0 745 78.4
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1158.3 747 77.6
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1157.9 800 73.5
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1157.1 747 77.1
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1157.1 750 77.9
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1156.7 751 77.2
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1154.0 746 78.3
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1153.7 747 77.4
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1153.7 747 77.6
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1153.3 751 77.1
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1153.3 749 77.3
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1146.3 745 76.6
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1146.0 747 78.2
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1143.6 716 79.5
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1142.9 762 76.1
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1142.9 749 76.9
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1142.5 749 76.4
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1141.3 747 75.6
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1140.9 746 76.7
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1140.6 748 76.3
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1139.0 748 76.6
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1139.0 749 76.6
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1137.9 760 75.8
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1137.5 746 76.7
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1137.1 748 76.2
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1132.9 749 76.6
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1132.1 750 75.9
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1131.7 757 75.6
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1131.3 742 76.3
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1131.3 747 75.9
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1130.9 747 75.9
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1130.5 753 75.3
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1129.0 747 75.5
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1127.9 750 75.6
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1126.7 748 76.2
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1125.9 748 75.5
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1123.2 747 76.4
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1123.2 749 75.4
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1122.5 749 74.9
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1120.1 748 75.7
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1119.4 749 74.4
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1118.2 749 75.4
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1117.1 749 74.6
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1116.7 749 74.2
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1116.3 756 73.5
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1115.9 749 74.1
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1114.8 749 74.0
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1114.0 747 74.8
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1113.2 747 75.6
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1111.3 749 73.8
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1111.3 749 73.8
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1111.3 748 74.9
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1110.9 748 75.0
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1110.1 748 73.8
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1109.4 746 74.5
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1109.4 749 75.4
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1107.4 749 74.6
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1107.0 659 82.9
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1105.9 747 73.6
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1105.9 746 73.9
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1104.0 748 73.4
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1104.0 698 77.1
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1100.1 708 78.8
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1099.7 741 74.5
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1099.3 753 73.0
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1097.4 748 72.7
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1093.6 742 74.3
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1093.2 842 67.3
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1092.0 720 75.0
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1088.9 781 70.3
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1085.5 739 73.5
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 1.3e-311 1072.8 666 80.2
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 3.3e-311 1071.6 750 72.4
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 6.0e-311 1070.8 756 72.0
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 2.5e-309 1065.4 742 72.4
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 1.4e-307 1059.7 746 72.0
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 4.4e-298 1028.1 721 71.8
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 1.3e-297 1026.5 659 76.9
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 8.4e-297 1023.8 659 76.9
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 5.6e-293 1011.1 756 68.4
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 8.1e-292 1007.3 1055 53.9
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 1.9e-288 996.1 659 75.9
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 5.6e-285 984.6 726 71.3
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 3.6e-284 981.9 622 79.3
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 2.9e-265 919.1 680 65.4
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 4.2e-264 915.2 679 67.2
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 6.7e-262 907.9 677 66.5
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 8.2e-260 901.0 689 65.6
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 5.9e-258 894.8 676 66.0
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 5.9e-258 894.8 676 66.0
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 2.2e-257 892.9 676 65.8
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 1.9e-232 810.1 679 58.8
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 1.8e-227 793.5 593 68.0
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 7.2e-224 781.6 593 67.5
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 1.5e-213 747.3 678 54.4
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 3.3e-208 729.6 705 53.6
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 1.9e-200 703.7 680 55.0
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 1.1e-184 651.4 671 56.0
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 2.1e-178 630.6 676 48.8
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 1.3e-169 601.3 319 92.8
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 9.9e-157 558.5 711 43.6
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 5.8e-149 532.7 288 87.5
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 3.2e-139 500.4 301 84.7
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 3.0e-129 467.2 361 62.9
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 4.1e-126 456.8 284 80.6
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 2.4e-118 431.0 280 74.6
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 6.5e-108 396.4 279 69.2
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 2.3e-89 334.7 237 69.6
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 3.4e-88 330.9 222 76.6
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 4.0e-81 307.4 279 59.9
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 8.3e-79 299.7 279 58.4
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 7.0e-78 296.6 241 63.1
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 1.5e-75 288.9 172 80.2
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 3.2e-70 271.2 400 46.8
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 8.6e-68 263.1 219 61.6
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 4.0e-65 254.2 126 95.2
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 9.9e-64 249.6 162 77.8
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 3.6e-58 231.1 114 94.7
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 2.4e-54 218.4 244 52.5
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 2.7e-53 214.9 138 81.2
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 4.5e-48 197.6 366 34.2
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 2.1e-45 188.7 117 78.6
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 4.0e-41 174.5 155 60.6
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 1.9e-38 165.6 124 71.0
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 2.3e-36 158.7 94 79.8
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 1.9e-35 155.6 107 72.0
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 1.3e-34 152.9 102 68.6
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 7.1e-30 137.1 142 49.3
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 9.3e-30 136.7 83 80.7
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 1.2e-29 136.3 137 57.7
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 4.3e-27 127.9 105 61.0
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 1.1e-25 123.2 61 91.8
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 4.5e-24 117.9 99 63.6
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 3.8e-23 114.8 220 30.9
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.2e-21 109.8 138 50.7
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 2.2e-15 89.0 50 80.0
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 7.2e-14 84.0 56 75.0
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 3.0e-12 78.6 42 88.1
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 3.3e-11 75.1 42 88.1
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 2.2e-10 72.4 38 92.1


User provided reference genes

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