Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 0.0e+00 1146.7 617 100.0
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 4.3e-230 801.6 622 71.4
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 1.1e-204 717.2 633 66.2
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 4.0e-196 688.7 641 61.2
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 3.8e-194 682.2 633 61.6
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 8.7e-191 671.0 647 58.9
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 3.1e-188 662.5 571 68.3
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 5.3e-188 661.8 641 58.7
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 4.6e-184 648.7 631 58.5
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 6.7e-183 644.8 636 60.2
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 3.1e-180 636.0 728 52.2
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 1.5e-179 633.6 631 58.5
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 3.4e-179 632.5 632 56.2
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 1.7e-178 630.2 728 52.1
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 2.2e-178 629.8 644 56.5
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 2.5e-177 626.3 664 54.1
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 2.5e-177 626.3 635 56.9
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 2.1e-176 623.2 636 54.9
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 3.9e-175 619.0 649 57.3
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 1.1e-174 617.5 631 55.5
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 2.5e-174 616.3 646 54.5
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 3.3e-174 615.9 631 55.3
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 9.7e-174 614.4 631 55.2
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 5.9e-171 605.1 630 56.2
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 5.1e-167 592.0 660 53.5
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 1.4e-164 583.9 634 52.2
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 1.2e-163 580.9 651 53.1
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.0e-163 580.1 639 52.3
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 1.6e-160 570.5 649 51.9
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 3.6e-160 569.3 640 52.7
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 6.1e-160 568.5 639 51.3
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 6.1e-160 568.5 641 53.0
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 1.0e-159 567.8 640 53.3
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 6.7e-159 565.1 639 50.9
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 8.8e-159 564.7 656 50.8
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 1.3e-157 560.8 641 51.8
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 3.7e-157 559.3 625 52.6
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.8e-156 557.0 641 51.5
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 2.4e-156 556.6 649 52.1
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 1.5e-155 553.9 632 53.5
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.0e-154 551.2 591 54.3
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 1.1e-153 547.7 537 58.5
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.1e-153 547.7 642 51.1
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 1.6e-152 543.9 623 50.7
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 2.7e-152 543.1 637 52.6
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 6.1e-152 542.0 648 50.0
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 5.3e-148 528.9 593 52.3
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 1.6e-147 527.3 631 51.0
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 1.5e-145 520.8 643 48.8
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 6.1e-144 515.4 684 49.1
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 3.0e-143 513.1 640 48.3
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 4.0e-143 512.7 641 49.0
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 1.2e-142 511.1 642 49.5
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 9.8e-142 508.1 643 49.0
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 1.7e-141 507.3 642 48.8
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 1.8e-140 503.8 643 47.0
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 1.8e-140 503.8 637 47.7
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 1.7e-138 497.3 614 49.2
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 8.5e-138 495.0 581 52.2
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 1.9e-137 493.8 635 50.9
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 7.2e-137 491.9 662 48.2
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.1e-136 490.3 597 49.1
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 2.7e-136 490.0 643 46.5
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 3.6e-136 489.6 633 49.3
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 1.5e-134 484.2 674 46.7
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 1.5e-134 484.2 674 46.7
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 2.0e-134 483.8 654 48.3
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 2.6e-134 483.4 654 48.3
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 1.3e-133 481.1 646 46.1
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 3.7e-133 479.6 641 45.9
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 2.4e-132 476.9 642 45.2
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 2.4e-132 476.9 631 49.3
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 7.0e-132 475.3 639 45.4
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 7.0e-132 475.3 636 45.3
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 1.6e-131 474.2 642 49.5
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 3.5e-131 473.0 659 48.3
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 5.9e-131 472.2 642 44.9
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 2.9e-130 469.9 636 46.1
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 1.5e-129 467.6 606 47.2
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 5.6e-129 465.7 499 55.1
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 5.6e-129 465.7 402 63.4
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 3.6e-128 463.0 661 45.4
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 8.9e-127 458.4 622 47.6
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 2.0e-126 457.2 638 45.6
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 1.6e-123 447.6 640 43.4
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 1.6e-123 447.6 640 43.4
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 2.0e-123 447.2 627 45.1
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 7.8e-123 445.3 625 46.2
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 1.9e-121 440.7 647 43.0
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 7.3e-121 438.7 645 42.9
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 2.8e-120 436.8 636 46.4
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 4.0e-119 433.0 628 44.7
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 1.7e-117 427.6 632 46.0
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 1.4e-116 424.5 651 45.8
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 6.0e-115 419.1 453 54.1
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 8.6e-114 415.2 632 42.9
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 3.1e-111 406.8 629 43.7
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 5.2e-103 379.4 627 40.8
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 9.9e-102 375.2 450 53.1
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 2.7e-99 367.1 637 40.0
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 6.2e-96 355.9 361 55.1
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 1.7e-93 347.8 672 37.4
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 8.1e-80 302.4 568 37.0
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 1.4e-76 291.6 288 54.9
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 8.7e-74 282.3 724 34.7
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 1.3e-58 231.9 263 54.4
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 9.7e-57 225.7 510 34.1
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 1.2e-51 208.8 266 45.5
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 2.3e-50 204.5 180 58.9
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 4.1e-47 193.7 503 30.6
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 7.7e-46 189.5 275 40.7
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 4.4e-41 173.7 140 62.9
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 6.5e-37 159.8 178 52.8
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.5e-33 148.7 127 59.1
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.8e-31 141.7 166 49.4
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 4.1e-31 140.6 113 60.2
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 1.7e-29 135.2 484 28.1
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 2.9e-29 134.4 523 28.9
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 5.0e-29 133.7 309 38.2
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 2.5e-28 131.3 148 54.1
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.1e-27 128.3 98 64.3
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 8.0e-27 126.3 507 27.8
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.3e-26 124.8 195 40.5
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 5.2e-26 123.6 581 25.6
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.7e-21 108.6 75 65.3
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 3.4e-17 94.4 78 65.4
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 5.7e-17 93.6 204 33.3
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 5.7e-17 93.6 108 47.2
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 6.3e-16 90.1 135 38.5
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 8.3e-16 89.7 214 34.6
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 5.0e-13 80.5 67 64.2
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.1e-11 75.1 63 52.4
Solyc02g062815.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.0e-10 72.8 50 68.0
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 4.0e-10 70.9 67 47.8
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 3.4e-09 67.8 123 41.5
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 2.0e-06 58.5 115 38.3


User provided reference genes

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