Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold108G30887 Striga asiatica HOM05D004767 ORTHO05D005674 2.8e-219 765.0 385 100.0
MSTRG.16702 Avicennia marina HOM05D004767 ORTHO05D005674 1.8e-173 612.8 352 86.4
Oeu010411.1 Olea europaea HOM05D004767 ORTHO05D005674 2.6e-169 599.0 352 84.1
Peaxi162Scf00431g00415 Petunia axillaris HOM05D004767 ORTHO05D005674 8.7e-165 583.9 352 80.7
Nitab4.5_0000235g0120 Nicotiana tabacum HOM05D004767 ORTHO05D005674 1.5e-161 573.2 352 80.1
PGSC0003DMG400003462 Solanum tuberosum HOM05D004767 ORTHO05D005674 1.0e-160 570.5 352 79.0
Solyc02g038750.3 Solanum lycopersicum HOM05D004767 ORTHO05D005674 1.3e-160 570.1 352 79.0
Sopen02g012180 Solanum pennellii HOM05D004767 ORTHO05D005674 1.7e-160 569.7 352 78.7
TAR381G0314 Trochodendron aralioides HOM05D004767 ORTHO05D005674 1.7e-160 569.7 352 81.0
TAR625G0043 Trochodendron aralioides HOM05D004767 ORTHO05D005674 7.2e-159 564.3 353 79.9
SalBow6G2358 Salvia bowleyana HOM05D004767 ORTHO05D005674 2.5e-156 555.8 363 79.9
Eucgr.H00074 Eucalyptus grandis HOM05D004767 ORTHO05D005674 3.3e-156 555.4 351 77.2
Nn6g31627 Nelumbo nucifera HOM05D004767 ORTHO05D005674 1.6e-155 553.1 353 78.2
GSVIVG01017458001 Vitis vinifera HOM05D004767 ORTHO05D005674 3.7e-155 552.0 353 79.3
Nitab4.5_0006401g0010 Nicotiana tabacum HOM05D004767 ORTHO05D005674 8.2e-155 550.8 334 81.4
Glyma.10G129800 Glycine max HOM05D004767 ORTHO05D005674 1.8e-154 549.7 353 76.2
Migut.B00408 Erythranthe guttata HOM05D004767 ORTHO05D005674 6.9e-154 547.7 347 79.3
SalBow6G5765 Salvia bowleyana HOM05D004767 ORTHO05D005674 1.2e-153 547.0 363 79.3
GSVIVG01020926001 Vitis vinifera HOM05D004767 ORTHO05D005674 3.4e-153 545.4 353 78.2
PGR102G1152 Punica granatum HOM05D004767 ORTHO05D005674 1.7e-152 543.1 353 75.4
Prupe.7G070600 Prunus persica HOM05D004767 ORTHO05D005674 3.2e-151 538.9 351 74.6
Lalb_Chr05g0214971 Lupinus albus HOM05D004767 ORTHO05D005674 7.2e-151 537.7 353 74.8
SalBow2G0232 Salvia bowleyana HOM05D004767 ORTHO05D005674 7.2e-151 537.7 352 79.5
Lalb_Chr09g0324851 Lupinus albus HOM05D004767 ORTHO05D005674 9.4e-151 537.3 352 74.7
VMungo1127G0990 Vigna mungo HOM05D004767 ORTHO05D005674 1.2e-150 537.0 352 74.1
QL10p048860 Quercus lobata HOM05D004767 ORTHO05D005674 3.6e-150 535.4 351 74.4
MD12G1063000 Malus domestica HOM05D004767 ORTHO05D005674 4.6e-150 535.0 351 74.6
Medtr4g111810 Medicago truncatula HOM05D004767 ORTHO05D005674 1.0e-149 533.9 375 70.9
RcHm_v2.0_Chr3g0480691 Rosa chinensis HOM05D004767 ORTHO05D005674 3.0e-149 532.3 352 75.3
Potri.004G095000 Populus trichocarpa HOM05D004767 ORTHO05D005674 8.8e-149 530.8 352 73.6
Lj4C240T4 Lonicera japonica HOM05D004767 ORTHO05D005674 2.6e-148 529.3 354 75.1
CANSAT54G2063 Cannabis sativa HOM05D004767 ORTHO05D005674 9.7e-148 527.3 329 78.4
CiPaw.03G094400 Carya illinoinensis HOM05D004767 ORTHO05D005674 9.7e-148 527.3 352 74.1
FAN09G1063 Fragaria x ananassa HOM05D004767 ORTHO05D005674 1.3e-147 526.9 351 75.2
Glyma.12G025800 Glycine max HOM05D004767 ORTHO05D005674 1.3e-147 526.9 352 73.9
TPR.G26773 Trifolium pratense HOM05D004767 ORTHO05D005674 1.3e-147 526.9 361 73.7
Manes.02G116500 Manihot esculenta HOM05D004767 ORTHO05D005674 4.8e-147 525.0 353 72.5
Potri.017G120100 Populus trichocarpa HOM05D004767 ORTHO05D005674 8.2e-147 524.2 352 71.3
TWI73G0530 Tripterygium wilfordii HOM05D004767 ORTHO05D005674 1.8e-146 523.1 351 72.4
Cc07_g12190 Coffea canephora HOM05D004767 ORTHO05D005674 2.4e-146 522.7 289 87.2
FvH4_6g22900 Fragaria vesca HOM05D004767 ORTHO05D005674 2.4e-146 522.7 351 74.9
Lj1g0021179 Lotus japonicus HOM05D004767 ORTHO05D005674 2.4e-146 522.7 355 72.1
HanXRQChr15g0489741 Helianthus annuus HOM05D004767 ORTHO05D005674 3.1e-146 522.3 354 72.0
FAN14G1715 Fragaria x ananassa HOM05D004767 ORTHO05D005674 4.1e-146 521.9 351 74.9
FAN02G2069 Fragaria x ananassa HOM05D004767 ORTHO05D005674 5.3e-146 521.5 351 74.6
Psat1g185000 Pisum sativum HOM05D004767 ORTHO05D005674 9.1e-146 520.8 360 71.4
TPR.G18695 Trifolium pratense HOM05D004767 ORTHO05D005674 1.5e-145 520.0 361 70.9
EL10Ac3g07307 Beta vulgaris HOM05D004767 ORTHO05D005674 5.9e-145 518.1 358 72.3
arahy.Tifrunner.gnm1.ann1.AK1NBZ Arachis hypogaea HOM05D004767 ORTHO05D005674 1.0e-144 517.3 355 74.1
DCAR_019301 Daucus carota HOM05D004767 ORTHO05D005674 1.3e-144 516.9 338 76.6
Phvul.011G028400 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.3e-144 516.9 354 71.8
MD14G1063600 Malus domestica HOM05D004767 ORTHO05D005674 6.5e-144 514.6 353 72.2
Duzib264G0649 Durio zibethinus HOM05D004767 ORTHO05D005674 2.5e-143 512.7 353 72.0
arahy.Tifrunner.gnm1.ann1.BE8FK9 Arachis hypogaea HOM05D004767 ORTHO05D005674 5.5e-143 511.5 405 66.2
ECA233G4977 Erigeron canadensis HOM05D004767 ORTHO05D005674 1.6e-142 510.0 355 72.1
Hma1.2p1_0085F.1_g044390 Hydrangea macrophylla HOM05D004767 ORTHO05D005674 1.6e-142 510.0 375 70.9
unitig_61.g26025 Utricularia gibba HOM05D004767 ORTHO05D005674 1.6e-142 510.0 356 72.8
PSO017G2362 Papaver somniferum HOM05D004767 ORTHO05D005674 6.1e-142 508.1 353 72.8
Cpa.g.sc365.7 Carica papaya HOM05D004767 ORTHO05D005674 1.0e-141 507.3 352 70.7
Hund21306 Selenicereus undatus HOM05D004767 ORTHO05D005674 1.8e-141 506.5 353 73.1
Aqoxy6G02991 Aquilegia oxysepala HOM05D004767 ORTHO05D005674 3.0e-141 505.8 353 72.0
Sc03g0004110 Simmondsia chinensis HOM05D004767 ORTHO05D005674 5.2e-141 505.0 354 71.8
THA.LOC104816808 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 5.2e-141 505.0 358 72.9
Ca_02533_v3 Cicer arietinum L. HOM05D004767 ORTHO05D005674 6.7e-141 504.6 387 66.4
THA.LOC104820618 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 8.8e-141 504.2 355 71.5
EL10Ac8g19950 Beta vulgaris HOM05D004767 ORTHO05D005674 2.6e-140 502.7 339 73.5
Medtr4g077783 Medicago truncatula HOM05D004767 ORTHO05D005674 2.6e-140 502.7 336 72.9
COL.COLO4_35713 Corchorus olitorius HOM05D004767 ORTHO05D005674 1.7e-139 500.0 352 71.0
Gorai.012G034000 Gossypium raimondii HOM05D004767 ORTHO05D005674 6.3e-139 498.0 354 70.3
Thecc.01G130700 Theobroma cacao HOM05D004767 ORTHO05D005674 7.0e-138 494.6 329 74.5
TAR625G0966 Trochodendron aralioides HOM05D004767 ORTHO05D005674 5.9e-137 491.5 329 76.0
Sabra17G0099100 Salix brachista HOM05D004767 ORTHO05D005674 7.7e-137 491.1 359 68.0
Gohir.D04G022900 Gossypium hirsutum HOM05D004767 ORTHO05D005674 2.5e-135 486.1 354 68.9
Sed0020265 Sechium edule HOM05D004767 ORTHO05D005674 3.2e-135 485.7 315 76.2
Actinidia28754 Actinidia chinensis HOM05D004767 ORTHO05D005674 4.2e-135 485.3 295 80.3
Gohir.A05G385700 Gossypium hirsutum HOM05D004767 ORTHO05D005674 1.2e-134 483.8 354 68.6
AUR62012542 Chenopodium quinoa HOM05D004767 ORTHO05D005674 3.6e-134 482.3 289 81.0
Sed0012135 Sechium edule HOM05D004767 ORTHO05D005674 3.6e-134 482.3 318 74.8
Rhsim08G0026000 Rhododendron simsii HOM05D004767 ORTHO05D005674 1.4e-133 480.3 376 65.7
COL.COLO4_38041 Corchorus olitorius HOM05D004767 ORTHO05D005674 3.7e-131 472.2 310 74.5
CDE08G0085 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 7.0e-130 468.0 355 66.2
Lsat_1_v5_gn_8_114040 Lactuca sativa HOM05D004767 ORTHO05D005674 7.0e-130 468.0 344 68.6
Atru.chr5.1742 Acer truncatum HOM05D004767 ORTHO05D005674 1.6e-129 466.8 354 66.7
PSO170G0853 Papaver somniferum HOM05D004767 ORTHO05D005674 2.7e-129 466.1 353 68.0
ClCG10G013460 Citrullus lanatus HOM05D004767 ORTHO05D005674 2.9e-128 462.6 315 71.1
CARHR128360 Cardamine hirsuta HOM05D004767 ORTHO05D005674 1.5e-127 460.3 311 71.4
CDE02G0197 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 1.5e-127 460.3 356 66.3
BcaC02g11487 Brassica carinata HOM05D004767 ORTHO05D005674 2.7e-126 456.1 304 72.4
Carub.0004s1593 Capsella rubella HOM05D004767 ORTHO05D005674 2.7e-126 456.1 311 71.1
Aa31LG9G14020 Aethionema arabicum HOM05D004767 ORTHO05D005674 3.6e-126 455.7 354 64.7
A05p11370 Brassica napus HOM05D004767 ORTHO05D005674 1.4e-125 453.8 311 71.4
C04p14860 Brassica napus HOM05D004767 ORTHO05D005674 1.4e-125 453.8 304 72.0
BraA05t20086Z Brassica rapa HOM05D004767 ORTHO05D005674 1.4e-125 453.8 311 71.4
AT2G34260 Arabidopsis thaliana HOM05D004767 ORTHO05D005674 2.3e-125 453.0 355 64.8
RcHm_v2.0_Chr4g0410631 Rosa chinensis HOM05D004767 ORTHO05D005674 2.3e-125 453.0 353 66.6
Sp4g16550 Schrenkiella parvula HOM05D004767 ORTHO05D005674 3.0e-125 452.6 315 71.1
BolC4t23059H Brassica oleracea HOM05D004767 ORTHO05D005674 5.2e-125 451.8 304 71.7
C04p63650 Brassica napus HOM05D004767 ORTHO05D005674 1.2e-124 450.7 304 72.0
BcaB02g09562 Brassica carinata HOM05D004767 ORTHO05D005674 2.0e-124 449.9 310 70.6
BcaB06g28745 Brassica carinata HOM05D004767 ORTHO05D005674 2.6e-124 449.5 310 70.3
Os07g0660700 Oryza sativa ssp. japonica HOM05D004767 ORTHO05D005674 4.4e-124 448.7 356 64.6
BraA04t18130Z Brassica rapa HOM05D004767 ORTHO05D005674 1.3e-123 447.2 304 71.4
HPP92_003941 Vanilla planifolia HOM05D004767 ORTHO05D005674 8.3e-123 444.5 355 63.9
vmacro18476 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 2.0e-121 439.9 333 67.0
Psat1g210160 Pisum sativum HOM05D004767 ORTHO05D005674 3.5e-121 439.1 272 77.2
Zm00001eb349300 Zea mays HOM05D004767 ORTHO05D005674 3.5e-121 439.1 360 61.9
Lj3A907T66 Lonicera japonica HOM05D004767 ORTHO05D005674 1.7e-120 436.8 360 63.1
MELO3C026614.2 Cucumis melo HOM05D004767 ORTHO05D005674 2.8e-118 429.5 300 69.0
Thhalv10016919m.g Eutrema salsugineum HOM05D004767 ORTHO05D005674 3.8e-112 409.1 304 66.4
Dinv40217 Davidia involucrata HOM05D004767 ORTHO05D005674 6.6e-112 408.3 230 85.7
AL4G30210 Arabidopsis lyrata HOM05D004767 ORTHO05D005674 1.0e-109 401.0 364 58.2
CSS0049016 Camellia sinensis var. sinensis HOM05D004767 ORTHO05D005674 4.4e-108 395.6 314 66.2
Mapoly0040s0029 Marchantia polymorpha HOM05D004767 ORTHO05D005674 3.2e-106 389.4 324 58.6
Haze_03669 Corylus avellana HOM05D004767 ORTHO05D005674 9.2e-106 387.9 307 66.8
Ah.09g236950 Amaranthus hybridus HOM05D004767 ORTHO05D005674 5.6e-103 378.6 318 61.6
AUR62014654 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.4e-101 374.0 312 63.8
CsaV3_3G043180 Cucumis sativus L. HOM05D004767 ORTHO05D005674 3.1e-101 372.9 321 59.2
Glyma.11G099900 Glycine max HOM05D004767 ORTHO05D005674 3.1e-101 372.9 299 63.2
AagrBONN_evm.TU.Sc2ySwM_344.1647 Anthoceros agrestis HOM05D004767 ORTHO05D005674 1.1e-95 354.4 296 56.8
Phvul.005G015700 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.1e-95 354.4 303 59.4
AUR62044118 Chenopodium quinoa HOM05D004767 ORTHO05D005674 3.3e-95 352.8 289 64.7
Phvul.005G015600 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 5.6e-95 352.1 302 60.3
SMO364G0336 Selaginella moellendorffii HOM05D004767 ORTHO05D005674 7.3e-95 351.7 356 53.1
A04p26260 Brassica napus HOM05D004767 ORTHO05D005674 2.9e-91 339.7 209 76.1
Cfa006688 Carpinus fangiana HOM05D004767 ORTHO05D005674 3.5e-89 332.8 266 65.8
CBR_g37537 Chara braunii HOM05D004767 ORTHO05D005674 3.1e-85 319.7 305 51.8
MCO07G146 Micromonas commoda HOM05D004767 ORTHO05D005674 1.4e-69 267.7 326 42.6
Oeu036465.1 Olea europaea HOM05D004767 ORTHO05D005674 1.2e-60 238.0 286 52.8
Glyma.20G080900 Glycine max HOM05D004767 ORTHO05D005674 2.6e-60 236.9 144 77.1
Medtr1g076780 Medicago truncatula HOM05D004767 ORTHO05D005674 1.7e-59 234.2 156 71.2
SHI13610 Sapria himalayana HOM05D004767 ORTHO05D005674 5.1e-56 222.6 267 46.8
ATR0680G041 Amborella trichopoda HOM05D004767 ORTHO05D005674 1.0e-51 208.4 155 63.2
SEGI_28078 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 6.5e-51 205.7 138 70.3
Cre02.g113250 Chlamydomonas reinhardtii HOM05D004767 ORTHO05D005674 3.7e-46 189.9 245 43.3
PRCOL_00000722 Prasinoderma coloniale HOM05D004767 ORTHO05D005674 3.7e-46 189.9 293 38.6
Psat6g227720 Pisum sativum HOM05D004767 ORTHO05D005674 5.0e-43 179.5 145 62.1
Pp3c5_17020 Physcomitrium patens HOM05D004767 ORTHO05D005674 3.6e-41 173.3 293 37.2
Psat6g227760 Pisum sativum HOM05D004767 ORTHO05D005674 5.1e-40 169.5 140 62.1
Phvul.011G028501 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 3.3e-39 166.8 117 69.2
QL07p001807 Quercus lobata HOM05D004767 ORTHO05D005674 1.0e-35 155.2 153 51.6
BolC4t27833H Brassica oleracea HOM05D004767 ORTHO05D005674 1.7e-30 137.9 315 34.6
ATR0231G001 Amborella trichopoda HOM05D004767 ORTHO05D005674 1.4e-29 134.8 114 64.0
Sabra17G0099200 Salix brachista HOM05D004767 ORTHO05D005674 2.0e-23 114.4 79 67.1
SEGI_20710 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 1.8e-21 107.8 94 59.6
SEGI_27353 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 3.0e-16 90.5 63 63.5
Cc11_g01140 Coffea canephora HOM05D004767 ORTHO05D005674 1.3e-14 85.1 44 86.4
Lsat_1_v5_gn_6_103760 Lactuca sativa HOM05D004767 ORTHO05D005674 6.3e-14 82.8 58 65.5
Phvul.011G028300 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 5.3e-13 79.7 46 73.9
GSVIVG01020113001 Vitis vinifera HOM05D004767 ORTHO05D005674 1.2e-12 78.6 53 77.4
Cc11_g01130 Coffea canephora HOM05D004767 ORTHO05D005674 3.5e-12 77.0 45 77.8
vmacro07517 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 2.9e-11 73.9 54 61.1
Actinidia09820 Actinidia chinensis HOM05D004767 ORTHO05D005674 3.8e-11 73.6 51 66.7
Actinidia28377 Actinidia chinensis HOM05D005323 ORTHO05D006820 2.1e-09 67.8 228 25.0
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 3.0e-08 63.9 165 24.8
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 6.8e-08 62.8 153 29.4
RcHm_v2.0_Chr5g0032061 Rosa chinensis HOM05D004767 ORTHO05D005674 1.5e-07 61.6 34 70.6
SMO356G0696 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 2.6e-07 60.8 292 24.0
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 4.4e-07 60.1 153 28.1
Actinidia27124 Actinidia chinensis HOM05D005323 ORTHO05D006820 5.7e-07 59.7 223 25.6
Lj6C229G10 Lonicera japonica HOM05D005323 ORTHO05D006820 5.7e-07 59.7 149 27.5


User provided reference genes

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