Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold108G30882 Striga asiatica HOM05D004783 ORTHO05D005581 3.7e-79 298.1 149 100.0
SGA_v2.0_scaffold21G09513 Striga asiatica HOM05D004783 ORTHO05D005581 8.8e-73 276.9 158 90.5
SGA_v2.0_scaffold80G25712 Striga asiatica HOM05D000897 ORTHO05D000716 4.0e-65 251.5 156 84.0
SGA_v2.0_scaffold296G47545 Striga asiatica HOM05D004783 ORTHO05D005581 6.6e-60 234.2 157 73.2
Migut.L01576 Erythranthe guttata HOM05D004783 ORTHO05D005581 3.4e-56 221.9 157 69.4
Oeu062248.1 Olea europaea HOM05D004783 ORTHO05D005581 3.5e-53 211.8 157 67.5
Migut.J00915 Erythranthe guttata HOM05D004783 ORTHO05D005581 7.8e-53 210.7 157 65.6
MSTRG.26477 Avicennia marina HOM05D004783 ORTHO05D005581 1.0e-52 210.3 157 65.6
PGSC0003DMG400027882 Solanum tuberosum HOM05D004783 ORTHO05D005581 3.1e-49 198.7 158 62.0
Sopen07g021630 Solanum pennellii HOM05D004783 ORTHO05D005581 6.8e-49 197.6 158 61.4
Nitab4.5_0003308g0060 Nicotiana tabacum HOM05D004783 ORTHO05D005581 1.5e-48 196.4 159 61.0
Solyc07g042030.2 Solanum lycopersicum HOM05D004783 ORTHO05D005581 1.5e-48 196.4 158 60.8
Peaxi162Scf00315g00041 Petunia axillaris HOM05D004783 ORTHO05D005581 2.0e-48 196.1 159 59.1
CAN.G147.12 Capsicum annuum HOM05D004783 ORTHO05D005581 2.4e-46 189.1 157 59.9
SGA_v2.0_scaffold9G04849 Striga asiatica HOM05D004783 ORTHO05D005581 1.6e-45 186.4 90 100.0
Hma1.2p1_0057F.1_g032040 Hydrangea macrophylla HOM05D004783 ORTHO05D005581 1.0e-44 183.7 161 56.5
Dinv06816 Davidia involucrata HOM05D004783 ORTHO05D005581 1.5e-43 179.9 161 57.8
Cc06_g12410 Coffea canephora HOM05D004783 ORTHO05D005581 2.5e-43 179.1 159 57.2
Actinidia24491 Actinidia chinensis HOM05D004783 ORTHO05D005581 4.3e-43 178.3 168 56.5
QL02p039304 Quercus lobata HOM05D004783 ORTHO05D005581 8.1e-42 174.1 169 53.3
CSS0049259 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 3.1e-41 172.2 174 51.7
HanXRQChr15g0495131 Helianthus annuus HOM05D004783 ORTHO05D005581 4.0e-41 171.8 166 54.2
CSS0029611 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 5.2e-41 171.4 174 51.7
CSS0039136 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 5.2e-41 171.4 174 51.7
Lj1P662T20 Lonicera japonica HOM05D004783 ORTHO05D005581 9.9e-40 167.2 158 57.0
Rhsim01G0260800 Rhododendron simsii HOM05D004783 ORTHO05D005581 1.7e-39 166.4 162 54.3
SalBow6G2874 Salvia bowleyana HOM05D004783 ORTHO05D005581 2.2e-39 166.0 157 56.1
Thecc.04G015500 Theobroma cacao HOM05D004783 ORTHO05D005581 2.2e-39 166.0 169 50.3
Cfa010144 Carpinus fangiana HOM05D004783 ORTHO05D005581 3.7e-39 165.2 160 53.1
TAR622G0302 Trochodendron aralioides HOM05D004783 ORTHO05D005581 6.4e-39 164.5 160 51.2
TAR622G0815 Trochodendron aralioides HOM05D004783 ORTHO05D005581 6.4e-39 164.5 160 51.2
Haze_23534 Corylus avellana HOM05D004783 ORTHO05D005581 1.1e-38 163.7 161 52.8
Lsat_1_v5_gn_4_139140 Lactuca sativa HOM05D004783 ORTHO05D005581 1.9e-38 162.9 162 51.9
Atru.chr9.109 Acer truncatum HOM05D004783 ORTHO05D005581 1.2e-37 160.2 162 51.2
CiPaw.13G145000 Carya illinoinensis HOM05D004783 ORTHO05D005581 1.2e-37 160.2 157 53.5
MD05G1041400 Malus domestica HOM05D004783 ORTHO05D005581 2.7e-37 159.1 159 51.6
Prupe.8G057300 Prunus persica HOM05D004783 ORTHO05D005581 6.0e-37 157.9 179 47.5
Eucgr.J00651 Eucalyptus grandis HOM05D004783 ORTHO05D005581 7.8e-37 157.5 163 52.1
MD10G1047800 Malus domestica HOM05D004783 ORTHO05D005581 1.3e-36 156.8 140 55.7
Gohir.A02G106600 Gossypium hirsutum HOM05D004783 ORTHO05D005581 3.9e-36 155.2 164 50.0
Gorai.003G087500 Gossypium raimondii HOM05D004783 ORTHO05D005581 1.9e-35 152.9 164 49.4
Nn2g14491 Nelumbo nucifera HOM05D004783 ORTHO05D005581 1.9e-35 152.9 151 47.0
TWI75G1155 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 1.9e-35 152.9 160 49.4
Gorai.012G085500 Gossypium raimondii HOM05D004783 ORTHO05D005581 2.5e-35 152.5 160 48.8
Ciclev10024609m.g Citrus clementina HOM05D004783 ORTHO05D005581 3.3e-35 152.1 164 47.6
Lsat_1_v5_gn_4_139241 Lactuca sativa HOM05D004783 ORTHO05D005581 3.3e-35 152.1 166 48.2
Cpa.g.c26548.5 Carica papaya HOM05D004783 ORTHO05D005581 4.3e-35 151.8 158 53.2
Gohir.A05G337100 Gossypium hirsutum HOM05D004783 ORTHO05D005581 7.3e-35 151.0 160 49.4
CANSAT56G4335 Cannabis sativa HOM05D004783 ORTHO05D005581 1.2e-34 150.2 160 48.8
ECA234G4279 Erigeron canadensis HOM05D004783 ORTHO05D005581 1.2e-34 150.2 167 46.7
ECA232G0714 Erigeron canadensis HOM05D004783 ORTHO05D005581 2.8e-34 149.1 168 45.8
COL.COLO4_29903 Corchorus olitorius HOM05D004783 ORTHO05D005581 3.6e-34 148.7 169 49.7
Gohir.D04G075700 Gossypium hirsutum HOM05D004783 ORTHO05D005581 3.6e-34 148.7 160 47.5
EL10Ac2g04386 Beta vulgaris HOM05D004783 ORTHO05D005581 4.7e-34 148.3 161 45.3
Sed0014805 Sechium edule HOM05D004783 ORTHO05D005581 6.2e-34 147.9 165 50.9
CsaV3_2G007350 Cucumis sativus L. HOM05D004783 ORTHO05D005581 1.2e-32 143.7 165 47.9
RcHm_v2.0_Chr5g0055041 Rosa chinensis HOM05D004783 ORTHO05D005581 3.4e-32 142.1 165 44.8
TWI79G0945 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 5.8e-32 141.4 160 46.9
DCAR_019962 Daucus carota HOM05D004783 ORTHO05D005581 1.3e-31 140.2 150 49.3
FAN25G1477 Fragaria x ananassa HOM05D004783 ORTHO05D005581 1.3e-31 140.2 165 44.8
Atru.BG.182.p Acer truncatum HOM05D004783 ORTHO05D005581 1.7e-31 139.8 137 51.1
MBI04_g31965_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 1.7e-31 139.8 151 47.0
FAN26G1702 Fragaria x ananassa HOM05D004783 ORTHO05D005581 1.9e-30 136.3 139 49.6
FvH4_3g29690 Fragaria vesca HOM05D004783 ORTHO05D005581 3.2e-30 135.6 139 48.9
FAN11G1373 Fragaria x ananassa HOM05D004783 ORTHO05D005581 3.2e-30 135.6 139 48.9
FAN15G2228 Fragaria x ananassa HOM05D004783 ORTHO05D005581 3.2e-30 135.6 139 48.9
FAN18G1946 Fragaria x ananassa HOM05D004783 ORTHO05D005581 3.2e-30 135.6 139 48.9
FAN16G2696 Fragaria x ananassa HOM05D004783 ORTHO05D005581 4.1e-30 135.2 139 48.2
PSO063G6404 Papaver somniferum HOM05D004783 ORTHO05D005581 5.4e-30 134.8 174 42.5
AUR62023108 Chenopodium quinoa HOM05D004783 ORTHO05D005581 2.1e-29 132.9 160 41.2
PSO198G0081 Papaver somniferum HOM05D004783 ORTHO05D005581 2.1e-29 132.9 174 42.0
CDE02G3572 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 4.6e-29 131.7 156 44.9
FAN09G0480 Fragaria x ananassa HOM05D004783 ORTHO05D005581 1.0e-28 130.6 139 48.2
CDE09G0275 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 1.3e-28 130.2 156 44.2
FAN09G4036 Fragaria x ananassa HOM05D004783 ORTHO05D005581 1.3e-28 130.2 139 48.2
LjContig00564g0007311 Lotus japonicus HOM05D004783 ORTHO05D005581 1.3e-28 130.2 155 45.8
Ah.16g100720 Amaranthus hybridus HOM05D004783 ORTHO05D005581 1.7e-28 129.8 163 42.3
Lalb_Chr04g0249471 Lupinus albus HOM05D004783 ORTHO05D005581 2.3e-28 129.4 162 43.2
Manes.02G133800 Manihot esculenta HOM05D004783 ORTHO05D005581 3.0e-28 129.0 156 46.8
Phvul.008G205300 Phaseolus vulgaris HOM05D004783 ORTHO05D005581 6.6e-28 127.9 156 41.7
AUR62009429 Chenopodium quinoa HOM05D004783 ORTHO05D005581 8.7e-28 127.5 159 39.6
PGR119G2361 Punica granatum HOM05D004783 ORTHO05D005581 8.7e-28 127.5 158 43.0
Aa31LG4G9300 Aethionema arabicum HOM05D004783 ORTHO05D005581 1.5e-27 126.7 162 44.4
Ca_06171_v3 Cicer arietinum L. HOM05D004783 ORTHO05D005581 2.5e-27 125.9 159 42.1
Glyma.02G276200 Glycine max HOM05D004783 ORTHO05D005581 5.6e-27 124.8 156 41.7
Psat2g021520 Pisum sativum HOM05D004783 ORTHO05D005581 5.6e-27 124.8 157 42.7
TPR.G14625 Trifolium pratense HOM05D004783 ORTHO05D005581 2.1e-26 122.9 155 41.3
Glyma.14G039600 Glycine max HOM05D004783 ORTHO05D005581 2.8e-26 122.5 155 40.6
Medtr5g088490 Medicago truncatula HOM05D004783 ORTHO05D005581 3.6e-26 122.1 155 40.0
AL2G30824 Arabidopsis lyrata HOM05D004783 ORTHO05D005581 6.2e-26 121.3 156 43.6
AT1G71210 Arabidopsis thaliana HOM05D004783 ORTHO05D005581 6.2e-26 121.3 157 43.3
MBI04_g31976_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 8.1e-26 120.9 132 47.0
ATR0605G071 Amborella trichopoda HOM05D004783 ORTHO05D005581 3.1e-25 119.0 137 43.8
Thhalv10018115m.g Eutrema salsugineum HOM05D004783 ORTHO05D005581 4.0e-25 118.6 156 44.2
Lj4g0006774 Lotus japonicus HOM05D004783 ORTHO05D005581 4.0e-25 118.6 155 41.3
CARHR064510 Cardamine hirsuta HOM05D004783 ORTHO05D005581 9.0e-25 117.5 156 42.3
SHI25070 Sapria himalayana HOM05D004783 ORTHO05D005581 3.4e-24 115.5 162 40.7
Potri.004G229100 Populus trichocarpa HOM05D004783 ORTHO05D005581 5.8e-24 114.8 145 45.5
VMungo0647G1136 Vigna mungo HOM05D004783 ORTHO05D005581 2.9e-23 112.5 156 39.7
TPR.G11801 Trifolium pratense HOM05D004783 ORTHO05D005581 3.2e-22 109.0 155 38.1
BcaB03g14878 Brassica carinata HOM05D004783 ORTHO05D005581 4.2e-22 108.6 156 40.4
Sabra01G0174200 Salix brachista HOM05D004783 ORTHO05D005581 4.2e-22 108.6 157 41.4
Sp5g26370 Schrenkiella parvula HOM05D004783 ORTHO05D005581 4.2e-22 108.6 156 40.4
A07p37560 Brassica napus HOM05D004783 ORTHO05D005581 9.3e-22 107.5 156 40.4
C06p45300 Brassica napus HOM05D004783 ORTHO05D005581 9.3e-22 107.5 156 40.4
BolC6t39586H Brassica oleracea HOM05D004783 ORTHO05D005581 9.3e-22 107.5 156 40.4
BraA07t31317Z Brassica rapa HOM05D004783 ORTHO05D005581 9.3e-22 107.5 156 40.4
Medtr5g088510 Medicago truncatula HOM05D004783 ORTHO05D005581 9.3e-22 107.5 157 38.9
QL03p008874 Quercus lobata HOM05D004783 ORTHO05D005581 1.6e-21 106.7 73 65.8
Ah.10g038540 Amaranthus hybridus HOM05D001978 ORTHO05D003036 2.1e-21 106.3 149 38.9
arahy.Tifrunner.gnm1.ann1.U93Q4L Arachis hypogaea HOM05D004783 ORTHO05D005581 4.6e-21 105.1 150 41.3
ATR0697G207 Amborella trichopoda HOM05D004783 ORTHO05D005581 8.7e-20 100.9 95 47.4
SEGI_13595 Sequoiadendron giganteum HOM05D004783 ORTHO05D005581 4.3e-19 98.6 133 36.8
Carub.0002s1809 Capsella rubella HOM05D004783 ORTHO05D005581 5.6e-19 98.2 138 40.6
THA.LOC104800219 Tarenaya hassleriana HOM05D004783 ORTHO05D005581 7.3e-19 97.8 153 39.9
Psat0ss7919g0040 Pisum sativum HOM05D004783 ORTHO05D005581 9.6e-19 97.4 157 36.9
arahy.Tifrunner.gnm1.ann1.7R7ZTH Arachis hypogaea HOM05D004783 ORTHO05D005581 4.8e-18 95.1 151 38.4
SEGI_02727 Sequoiadendron giganteum HOM05D004783 ORTHO05D005581 1.2e-16 90.5 150 32.0
COL.COLO4_04586 Corchorus olitorius HOM05D004783 ORTHO05D005581 8.4e-15 84.3 167 34.7
arahy.Tifrunner.gnm1.ann1.I0AKGU Arachis hypogaea HOM05D004783 ORTHO05D005581 1.4e-14 83.6 136 37.5
arahy.Tifrunner.gnm1.ann1.Z9P42K Arachis hypogaea HOM05D004783 ORTHO05D005581 2.4e-14 82.8 136 36.8
arahy.Tifrunner.gnm1.ann1.EB1NGP Arachis hypogaea HOM05D004783 ORTHO05D005581 1.2e-13 80.5 138 36.2
Os02g0127600 Oryza sativa ssp. japonica HOM05D004783 ORTHO05D005581 3.0e-12 75.9 161 29.2
Zm00001eb231010 Zea mays HOM05D004783 ORTHO05D005581 3.9e-12 75.5 158 29.1
CDE01G0049 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 6.2e-10 68.2 71 46.5
Ah.05g173850 Amaranthus hybridus HOM05D004783 ORTHO05D005581 1.4e-09 67.0 59 50.8
CDE12G0310 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 3.1e-09 65.9 69 43.5
Potri.003G000601 Populus trichocarpa HOM05D004783 ORTHO05D005581 2.6e-08 62.8 76 44.7
HPP92_028041 Vanilla planifolia HOM05D004783 ORTHO05D005581 4.5e-08 62.0 52 51.9
Lalb_Chr19g0125351 Lupinus albus HOM05D002986 ORTHO05D003966 3.8e-07 58.9 107 29.9
Manes.03G175400 Manihot esculenta HOM05D000424 ORTHO05D000355 4.2e-06 55.5 142 26.8


User provided reference genes

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