Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 1.1e-89 333.2 164 100.0
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 1.4e-71 273.1 164 83.5
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 4.2e-60 235.0 165 72.7
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 5.2e-58 228.0 164 70.7
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 3.4e-57 225.3 168 67.3
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 8.0e-51 204.1 202 55.9
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 6.3e-48 194.5 164 62.2
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 1.1e-44 183.7 164 57.9
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 1.2e-43 180.3 164 57.3
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 2.8e-43 179.1 164 57.3
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 8.9e-42 174.1 164 54.3
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 8.9e-42 174.1 165 55.8
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 2.6e-41 172.6 164 54.3
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 4.4e-41 171.8 169 54.4
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 5.8e-41 171.4 164 54.3
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 5.8e-41 171.4 164 53.7
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.3e-40 170.2 164 52.4
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 3.7e-40 168.7 164 53.0
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 3.7e-40 168.7 165 53.9
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.1e-39 167.2 164 54.3
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 1.1e-39 167.2 164 52.4
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 5.4e-39 164.9 164 53.0
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 5.4e-39 164.9 164 51.8
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.2e-38 163.7 166 53.0
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.2e-38 163.7 166 53.0
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 2.7e-38 162.5 164 51.8
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 3.5e-38 162.2 164 52.4
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 6.0e-38 161.4 164 51.8
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 6.0e-38 161.4 165 52.1
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 7.8e-38 161.0 166 53.6
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 1.3e-37 160.2 165 53.3
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 1.7e-37 159.8 164 52.4
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 3.9e-37 158.7 165 52.1
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 3.9e-37 158.7 164 51.2
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 5.0e-37 158.3 165 52.1
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 1.1e-36 157.1 149 54.4
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 1.5e-36 156.8 164 55.5
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 3.3e-36 155.6 164 53.0
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 5.6e-36 154.8 165 51.5
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 7.3e-36 154.5 166 50.0
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 9.5e-36 154.1 165 49.1
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 9.5e-36 154.1 161 48.4
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 4.7e-35 151.8 165 50.3
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 8.0e-35 151.0 164 51.8
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 8.0e-35 151.0 164 50.6
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 1.1e-34 150.6 164 50.0
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 1.4e-34 150.2 177 48.6
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 1.4e-34 150.2 171 47.4
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.8e-34 149.8 159 51.6
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 6.8e-34 147.9 164 50.6
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 8.9e-34 147.5 165 47.9
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 1.2e-33 147.1 164 50.6
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.2e-33 147.1 164 50.0
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 1.2e-33 147.1 167 48.5
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.5e-33 146.7 167 48.5
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 1.5e-33 146.7 160 46.9
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.5e-33 146.7 164 50.6
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.5e-33 146.7 164 50.0
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 2.0e-33 146.4 164 47.6
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 2.6e-33 146.0 160 48.8
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 3.4e-33 145.6 163 44.8
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 5.8e-33 144.8 166 47.6
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 7.5e-33 144.4 166 47.6
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 1.3e-32 143.7 160 46.2
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 1.7e-32 143.3 162 50.0
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 1.7e-32 143.3 165 46.1
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 3.7e-32 142.1 163 48.5
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 6.4e-32 141.4 167 47.3
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 6.4e-32 141.4 166 46.4
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 8.3e-32 141.0 160 46.2
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 8.3e-32 141.0 160 46.2
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 8.3e-32 141.0 169 49.7
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 1.9e-31 139.8 167 47.9
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 1.9e-31 139.8 159 45.9
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 5.4e-31 138.3 160 46.2
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 9.2e-31 137.5 201 41.3
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 9.2e-31 137.5 161 47.2
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 9.2e-31 137.5 164 46.3
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 1.6e-30 136.7 160 45.6
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 2.7e-30 136.0 160 45.6
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 2.7e-30 136.0 166 47.6
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 3.5e-30 135.6 167 45.5
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 7.8e-30 134.4 164 44.5
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.3e-29 133.7 164 45.7
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 1.7e-29 133.3 164 44.5
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 2.3e-29 132.9 162 45.7
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 3.0e-29 132.5 163 46.6
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 3.0e-29 132.5 161 46.6
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 3.9e-29 132.1 244 36.5
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 6.6e-29 131.3 160 44.4
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 6.6e-29 131.3 164 45.1
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 1.1e-28 130.6 192 40.1
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 1.5e-28 130.2 167 43.1
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 3.3e-28 129.0 160 43.8
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 3.3e-28 129.0 193 39.9
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 4.3e-28 128.6 164 43.3
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 1.2e-27 127.1 230 37.4
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 2.1e-27 126.3 173 41.6
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 2.8e-27 125.9 169 42.6
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 3.6e-27 125.6 166 44.0
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 6.2e-27 124.8 111 52.3
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 1.4e-26 123.6 165 41.8
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 1.8e-26 123.2 144 50.7
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.8e-26 123.2 164 42.7
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.8e-26 123.2 164 42.7
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 2.3e-26 122.9 162 45.1
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 8.9e-26 120.9 165 41.8
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 3.4e-25 119.0 159 42.1
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 3.4e-25 119.0 267 32.6
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 5.8e-25 118.2 81 69.1
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 5.8e-25 118.2 164 42.7
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 1.7e-24 116.7 164 39.6
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 2.2e-24 116.3 161 42.9
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 8.3e-24 114.4 170 38.8
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 5.4e-23 111.7 157 43.3
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 5.4e-23 111.7 226 34.5
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 5.4e-23 111.7 79 64.6
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 2.1e-22 109.8 157 42.7
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 2.1e-22 109.8 157 42.7
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 4.6e-22 108.6 106 50.9
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 4.6e-22 108.6 176 39.8
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 6.0e-22 108.2 161 42.9
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 7.8e-22 107.8 160 40.0
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 1.0e-21 107.5 161 42.9
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 1.3e-21 107.1 81 60.5
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 1.3e-21 107.1 162 42.0
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 1.3e-21 107.1 156 41.7
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 1.7e-21 106.7 159 41.5
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 2.3e-21 106.3 156 42.9
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 3.9e-21 105.5 154 43.5
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 5.1e-21 105.1 154 40.3
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 5.1e-21 105.1 160 42.5
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 5.1e-21 105.1 160 42.5
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 6.6e-21 104.8 160 41.2
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 6.6e-21 104.8 182 37.4
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 8.6e-21 104.4 158 41.1
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 1.9e-20 103.2 155 42.6
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 1.9e-20 103.2 158 41.8
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 5.6e-20 101.7 161 41.6
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 5.6e-20 101.7 164 36.0
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 8.1e-19 97.8 105 53.3
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 2.0e-17 93.2 162 38.9
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 1.3e-16 90.5 163 34.4
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 8.4e-16 87.8 79 54.4
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 3.2e-15 85.9 73 57.5
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 2.3e-13 79.7 162 35.8
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 4.3e-12 75.5 79 45.6
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 9.6e-12 74.3 81 40.7
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 3.6e-11 72.4 152 31.6
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 4.7e-11 72.0 152 35.5
Sabra19G0094000 Salix brachista HOM05D004587 ORTHO05D005512 1.4e-10 70.5 44 75.0
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 9.0e-10 67.8 96 41.7
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 1.5e-09 67.0 100 36.0
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.4e-07 59.7 82 42.7
Actinidia03382 Actinidia chinensis HOM05D004587 ORTHO05D005512 7.8e-06 54.7 45 55.6


User provided reference genes

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