Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 4.3e-275 950.7 465 100.0
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 1.8e-212 742.7 469 80.0
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 1.7e-210 736.1 472 78.0
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 5.0e-183 644.8 460 70.2
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 1.5e-179 633.3 456 70.0
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 1.5e-179 633.3 456 70.0
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 6.4e-178 627.9 458 68.6
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 1.2e-176 623.6 459 68.2
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 8.6e-175 617.5 459 68.4
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 1.1e-174 617.1 439 71.8
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 9.5e-174 614.0 440 70.7
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 1.1e-172 610.5 452 66.8
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 8.9e-172 607.4 458 67.9
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 1.5e-171 606.7 452 66.8
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.0e-171 606.3 444 68.2
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 3.4e-171 605.5 438 68.0
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 2.2e-170 602.8 456 66.0
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 2.9e-170 602.4 460 66.1
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 8.3e-170 600.9 434 68.4
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 1.9e-169 599.7 460 66.3
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 3.2e-169 599.0 460 65.2
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 2.7e-168 595.9 459 65.4
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 6.0e-168 594.7 459 64.5
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 1.3e-167 593.6 423 70.9
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 3.0e-167 592.4 429 67.1
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 3.9e-167 592.0 456 65.1
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 5.1e-167 591.7 456 66.2
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 8.6e-167 590.9 459 64.3
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.1e-166 590.5 458 65.1
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 1.5e-166 590.1 460 63.7
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 3.3e-166 589.0 454 65.4
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 7.3e-166 587.8 460 64.3
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 9.5e-166 587.4 454 65.2
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 1.2e-165 587.0 449 64.6
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.6e-165 586.6 450 65.1
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 1.6e-165 586.6 447 66.2
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 3.6e-165 585.5 471 63.3
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 4.7e-165 585.1 461 62.3
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 6.2e-165 584.7 452 64.2
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 3.1e-164 582.4 420 67.6
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 3.1e-164 582.4 450 64.7
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 3.1e-164 582.4 471 63.5
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 6.8e-164 581.3 429 66.2
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 8.9e-164 580.9 445 65.8
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 1.2e-163 580.5 439 65.8
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 1.2e-163 580.5 444 66.0
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 1.2e-163 580.5 465 63.0
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 3.4e-163 578.9 455 64.8
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 4.4e-163 578.6 433 65.4
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 4.4e-163 578.6 453 63.6
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 5.8e-163 578.2 462 63.9
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 5.8e-163 578.2 450 63.1
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 1.7e-162 576.6 428 66.8
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 2.2e-162 576.2 440 66.6
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 2.9e-162 575.9 440 64.8
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.9e-162 575.9 450 64.2
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 6.4e-162 574.7 428 66.4
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 8.4e-162 574.3 496 60.7
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 1.9e-161 573.2 445 65.2
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 3.5e-160 568.9 437 64.1
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 3.5e-160 568.9 464 62.5
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 4.6e-160 568.5 423 66.4
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 6.0e-160 568.2 426 65.7
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 1.7e-159 566.6 422 67.1
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 2.3e-159 566.2 471 62.4
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 3.0e-159 565.8 439 63.6
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 6.6e-159 564.7 450 63.6
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 6.6e-159 564.7 450 63.6
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 8.6e-159 564.3 450 63.3
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 1.5e-158 563.5 428 65.0
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 1.5e-158 563.5 450 63.3
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 1.5e-158 563.5 461 62.3
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 1.5e-158 563.5 418 67.7
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 3.3e-158 562.4 461 62.7
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 9.6e-158 560.8 426 65.5
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 2.1e-157 559.7 438 64.4
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 2.1e-157 559.7 437 63.8
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 6.2e-157 558.1 416 67.1
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 1.4e-156 557.0 464 62.5
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 3.1e-156 555.8 438 64.2
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 1.5e-155 553.5 454 62.3
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 7.6e-155 551.2 449 63.3
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 7.6e-155 551.2 431 64.7
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 1.7e-154 550.1 499 56.7
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 4.9e-154 548.5 468 60.9
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 1.9e-153 546.6 459 61.0
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 2.4e-153 546.2 430 63.3
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 7.1e-153 544.7 459 61.0
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 6.6e-151 538.1 437 62.5
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.5e-150 537.0 440 63.6
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 1.9e-150 536.6 437 62.9
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 3.3e-150 535.8 411 65.0
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 1.4e-148 530.4 419 64.9
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 4.0e-140 502.3 369 65.9
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 1.5e-139 500.4 332 72.0
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 2.2e-138 496.5 392 61.5
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 8.4e-138 494.6 312 76.0
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 2.4e-137 493.0 401 60.1
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 9.3e-137 491.1 418 59.1
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 2.1e-136 490.0 418 59.3
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 2.8e-133 479.6 451 55.2
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 6.2e-133 478.4 420 56.2
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 1.2e-131 474.2 461 55.5
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 2.0e-131 473.4 431 56.1
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 4.5e-131 472.2 463 54.0
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 1.4e-129 467.2 337 68.0
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 4.8e-125 452.2 398 57.0
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 5.9e-123 445.3 369 59.6
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 3.8e-122 442.6 369 59.1
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 1.1e-121 441.0 453 51.9
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 5.5e-121 438.7 336 64.0
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 7.9e-120 434.9 369 58.0
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 1.5e-118 430.6 471 49.5
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 5.0e-114 415.6 293 68.9
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 4.8e-109 399.1 465 49.7
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 1.2e-104 384.4 308 64.6
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 5.0e-98 362.5 283 62.5
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 8.0e-96 355.1 333 53.5
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 5.7e-94 349.0 359 49.3
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 5.9e-91 339.0 216 73.1
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 8.0e-88 328.6 308 53.9
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 2.6e-86 323.6 450 42.4
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 1.7e-69 267.7 348 41.4
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 1.4e-68 264.6 265 55.1
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 2.1e-64 250.8 230 55.2
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 1.0e-63 248.4 169 68.6
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 2.3e-63 247.3 243 49.8
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 8.3e-61 238.8 226 52.7
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 1.1e-57 228.4 166 71.1
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 2.1e-56 224.2 283 50.2
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.8e-47 194.5 120 74.2
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 7.1e-44 182.6 135 58.5
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 2.5e-41 174.1 189 54.0
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 7.6e-38 162.5 127 55.9
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 9.6e-33 145.6 92 77.2
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 3.1e-31 140.6 181 42.5
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 6.9e-31 139.4 145 53.8
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 2.1e-27 127.9 121 54.5
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 6.7e-26 122.9 356 29.5
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 9.6e-25 119.0 330 28.5
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 9.3e-20 102.4 74 63.5
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 9.6e-17 92.4 63 66.7
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 4.0e-15 87.0 52 73.1
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 3.3e-09 67.4 76 48.7
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 5.9e-06 56.6 78 42.3
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 5.9e-06 56.6 78 42.3


User provided reference genes

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